Wall clock time and date at job start Tue Mar 31 2020 08:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 3 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21288 * 120.00081 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00464 * 180.02562 * 14 13 3 17 17 H 1.08993 * 109.47219 * 59.99069 * 16 14 13 18 18 C 1.53004 * 109.46963 * 299.99585 * 16 14 13 19 19 O 1.42904 * 109.47160 * 64.99528 * 18 16 14 20 20 C 1.50702 * 109.47565 * 179.97438 * 16 14 13 21 21 C 1.38247 * 119.97299 * 59.71589 * 20 16 14 22 22 C 1.38201 * 120.02211 * 179.76983 * 21 20 16 23 23 C 1.38448 * 119.97568 * 0.51177 * 22 21 20 24 24 F 1.35103 * 120.03056 * 179.76765 * 23 22 21 25 25 C 1.38460 * 119.95200 * 359.74477 * 23 22 21 26 26 C 1.38204 * 119.97345 * 0.02562 * 25 23 22 27 27 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 28 28 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 29 29 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 31 31 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 32 32 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 33 33 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 34 34 H 1.08989 * 109.47350 * 185.00091 * 18 16 14 35 35 H 1.09001 * 109.46649 * 305.00080 * 18 16 14 36 36 H 0.96696 * 113.99717 * 179.97438 * 19 18 16 37 37 H 1.07999 * 119.98778 * 0.02742 * 21 20 16 38 38 H 1.08000 * 120.01142 * 180.26006 * 22 21 20 39 39 H 1.07997 * 120.01994 * 179.97438 * 25 23 22 40 40 H 1.07997 * 119.99247 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4535 0.8896 1.3415 9 14 3.0960 0.1144 2.5731 10 1 2.8802 -1.3232 2.2702 11 1 3.7905 0.2462 3.8792 12 1 1.7851 0.8090 2.6374 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3395 2.6321 -0.4344 16 6 0.0365 3.3377 -2.6549 17 1 0.0675 2.6131 -3.4684 18 6 1.0070 4.4821 -2.9540 19 8 2.3115 3.9500 -3.1936 20 6 -1.3614 3.8853 -2.5236 21 6 -1.6472 4.8226 -1.5483 22 6 -2.9276 5.3290 -1.4301 23 6 -3.9267 4.8896 -2.2818 24 9 -5.1799 5.3804 -2.1642 25 6 -3.6405 3.9469 -3.2548 26 6 -2.3583 3.4454 -3.3743 27 1 -0.3634 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0275 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 5.8763 0.4948 2.1200 33 1 2.2721 2.1230 -1.9977 34 1 0.6681 5.0246 -3.8364 35 1 1.0424 5.1605 -2.1016 36 1 2.9796 4.6206 -3.3907 37 1 -0.8686 5.1622 -0.8813 38 1 -3.1497 6.0643 -0.6708 39 1 -4.4191 3.6031 -3.9196 40 1 -2.1346 2.7104 -4.1334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339352607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:38 Heat of formation + Delta-G solvation = -109.187317 kcal Electronic energy + Delta-G solvation = -24204.361150 eV Core-core repulsion = 20512.554116 eV Total energy + Delta-G solvation = -3691.807035 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.96460 -40.15833 -38.48365 -36.77612 -35.29848 -32.97301 -32.26754 -31.31076 -31.21715 -28.45827 -27.28394 -24.15005 -23.11863 -22.73448 -21.98071 -20.25479 -19.39285 -17.87867 -17.46943 -17.39212 -16.45910 -15.84291 -15.72159 -15.58251 -15.34004 -14.92129 -14.60400 -14.08240 -13.83978 -13.63704 -13.59716 -13.31644 -13.06215 -12.60006 -12.31230 -12.12259 -11.96201 -11.80038 -11.62199 -11.32283 -11.05574 -10.93716 -10.82371 -10.58876 -10.13521 -9.88586 -9.52098 -9.19691 -9.17366 -8.97999 -8.71328 -8.61235 -7.94224 -6.17497 -4.18850 1.03806 1.19118 3.22543 3.26118 3.37086 3.42445 3.45802 3.90562 4.17924 4.26690 4.34558 4.62832 4.73031 4.84604 5.06870 5.10046 5.16232 5.23687 5.25818 5.30384 5.67741 5.69816 5.83985 5.93095 6.01238 6.03488 6.06453 6.17097 6.22528 6.46394 6.69456 6.74039 6.80552 6.89870 6.99995 7.33722 7.39621 7.58596 7.59413 8.23822 8.65877 8.82137 9.06858 9.44550 10.94708 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.004284 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.630708 B = 6534.198200 C = 7165.315879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.046 0.954 5 C -0.530 4.530 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.894 5.894 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.261 1.261 13 N -0.686 5.686 14 C 0.508 3.492 15 O -0.549 6.549 16 C -0.073 4.073 17 H 0.108 0.892 18 C 0.091 3.909 19 O -0.566 6.566 20 C -0.069 4.069 21 C -0.051 4.051 22 C -0.155 4.155 23 C 0.094 3.906 24 F -0.144 7.144 25 C -0.158 4.158 26 C -0.081 4.081 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.266 0.734 33 H 0.404 0.596 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.386 0.614 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.120 8.020 -11.305 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.064 0.936 5 C -0.568 4.568 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.531 5.531 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.185 1.185 13 N -0.335 5.335 14 C 0.292 3.708 15 O -0.428 6.428 16 C -0.095 4.095 17 H 0.126 0.874 18 C 0.013 3.987 19 O -0.372 6.372 20 C -0.070 4.070 21 C -0.070 4.070 22 C -0.174 4.174 23 C 0.075 3.925 24 F -0.123 7.123 25 C -0.177 4.177 26 C -0.099 4.099 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.241 0.759 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.235 0.765 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.825 7.392 -10.398 18.812 hybrid contribution -0.078 0.028 0.376 0.385 sum -13.903 7.420 -10.023 18.676 Atomic orbital electron populations 1.21863 0.96966 0.98903 1.02241 1.22288 0.94312 1.00110 1.01001 1.19129 0.95567 0.88403 0.83118 0.93578 1.21083 0.88710 1.39516 1.07523 0.90070 1.24833 0.94827 0.95239 0.97649 1.69869 1.08677 1.44857 1.29707 0.86925 0.80991 0.79985 0.80938 1.20303 1.22260 1.18527 1.46197 1.14657 1.54571 1.18100 1.19992 0.82879 0.79587 0.88387 1.90687 1.51606 1.60241 1.40292 1.20327 0.91634 0.98276 0.99225 0.87427 1.22004 0.83037 0.93973 0.99734 1.86387 1.18834 1.38378 1.93591 1.19241 0.93896 0.97306 0.96525 1.20857 0.95970 0.94404 0.95724 1.21105 0.92870 1.02894 1.00485 1.17727 0.79574 0.96989 0.98199 1.91481 1.38632 1.86624 1.95544 1.21024 0.98109 0.98852 0.99685 1.20869 0.91542 0.98772 0.98685 0.92928 0.92948 0.95111 0.92356 0.92893 0.92387 0.75939 0.92733 0.92917 0.76541 0.84979 0.84826 0.84864 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.52 37.16 0.32 -2.60 16 2 C -0.14 -3.12 5.11 -26.73 -0.14 -3.25 16 3 C 0.24 5.74 1.83 -69.09 -0.13 5.62 16 4 H 0.05 1.21 6.63 -51.93 -0.34 0.87 16 5 C -0.53 -14.36 9.31 -34.44 -0.32 -14.68 16 6 H 0.08 2.33 7.98 -52.49 -0.42 1.91 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 9 Si 0.88 21.90 24.41 -169.99 -4.15 17.75 16 10 H -0.28 -6.67 6.84 56.52 0.39 -6.29 16 11 H -0.30 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.26 -6.43 6.52 56.52 0.37 -6.06 16 13 N -0.69 -13.63 4.76 -54.94 -0.26 -13.89 16 14 C 0.51 9.17 5.59 -10.99 -0.06 9.11 16 15 O -0.55 -11.48 12.22 5.55 0.07 -11.41 16 16 C -0.07 -0.96 2.67 -92.92 -0.25 -1.21 16 17 H 0.11 1.27 7.87 -51.93 -0.41 0.86 16 18 C 0.09 1.00 6.16 37.16 0.23 1.23 16 19 O -0.57 -6.61 11.43 -35.23 -0.40 -7.02 16 20 C -0.07 -0.87 4.40 -104.62 -0.46 -1.33 16 21 C -0.05 -0.66 7.97 -39.59 -0.32 -0.98 16 22 C -0.15 -1.86 10.03 -39.52 -0.40 -2.26 16 23 C 0.09 1.14 7.30 -39.42 -0.29 0.85 16 24 F -0.14 -1.78 17.27 2.25 0.04 -1.75 16 25 C -0.16 -1.71 10.03 -39.51 -0.40 -2.11 16 26 C -0.08 -0.88 9.67 -39.59 -0.38 -1.27 16 27 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 28 H 0.05 1.04 5.64 -51.93 -0.29 0.75 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.05 1.25 3.24 -51.93 -0.17 1.09 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.40 7.60 6.60 -40.82 -0.27 7.33 16 34 H 0.05 0.47 8.14 -51.94 -0.42 0.05 16 35 H 0.05 0.60 7.59 -51.93 -0.39 0.20 16 36 H 0.39 2.90 9.12 45.56 0.42 3.31 16 37 H 0.13 1.73 7.58 -52.49 -0.40 1.33 16 38 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.13 1.14 7.94 -52.49 -0.42 0.72 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -32.20 325.42 -6.11 -38.31 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.40 Total: 9.63 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.68 Total: -10.80 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.51 Total: -39.63 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.33 Total: -18.43 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.15 Total: 17.75 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.20 -6.11 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339352607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.875 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds