Wall clock time and date at job start Tue Mar 31 2020 08:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 3 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21288 * 120.00081 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00464 * 180.02562 * 14 13 3 17 17 H 1.08993 * 109.47219 * 59.99069 * 16 14 13 18 18 C 1.53004 * 109.46963 * 299.99585 * 16 14 13 19 19 O 1.42904 * 109.47160 * 64.99528 * 18 16 14 20 20 C 1.50702 * 109.47565 * 179.97438 * 16 14 13 21 21 C 1.38247 * 119.97299 * 59.71589 * 20 16 14 22 22 C 1.38201 * 120.02211 * 179.76983 * 21 20 16 23 23 C 1.38448 * 119.97568 * 0.51177 * 22 21 20 24 24 F 1.35103 * 120.03056 * 179.76765 * 23 22 21 25 25 C 1.38460 * 119.95200 * 359.74477 * 23 22 21 26 26 C 1.38204 * 119.97345 * 0.02562 * 25 23 22 27 27 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 28 28 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 29 29 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 31 31 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 32 32 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 33 33 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 34 34 H 1.08989 * 109.47350 * 185.00091 * 18 16 14 35 35 H 1.09001 * 109.46649 * 305.00080 * 18 16 14 36 36 H 0.96696 * 113.99717 * 179.97438 * 19 18 16 37 37 H 1.07999 * 119.98778 * 0.02742 * 21 20 16 38 38 H 1.08000 * 120.01142 * 180.26006 * 22 21 20 39 39 H 1.07997 * 120.01994 * 179.97438 * 25 23 22 40 40 H 1.07997 * 119.99247 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4535 0.8896 1.3415 9 14 3.0960 0.1144 2.5731 10 1 2.8802 -1.3232 2.2702 11 1 3.7905 0.2462 3.8792 12 1 1.7851 0.8090 2.6374 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3395 2.6321 -0.4344 16 6 0.0365 3.3377 -2.6549 17 1 0.0675 2.6131 -3.4684 18 6 1.0070 4.4821 -2.9540 19 8 2.3115 3.9500 -3.1936 20 6 -1.3614 3.8853 -2.5236 21 6 -1.6472 4.8226 -1.5483 22 6 -2.9276 5.3290 -1.4301 23 6 -3.9267 4.8896 -2.2818 24 9 -5.1799 5.3804 -2.1642 25 6 -3.6405 3.9469 -3.2548 26 6 -2.3583 3.4454 -3.3743 27 1 -0.3634 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0275 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 5.8763 0.4948 2.1200 33 1 2.2721 2.1230 -1.9977 34 1 0.6681 5.0246 -3.8364 35 1 1.0424 5.1605 -2.1016 36 1 2.9796 4.6206 -3.3907 37 1 -0.8686 5.1622 -0.8813 38 1 -3.1497 6.0643 -0.6708 39 1 -4.4191 3.6031 -3.9196 40 1 -2.1346 2.7104 -4.1334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339352607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:38 Heat of formation + Delta-G solvation = -132.391803 kcal Electronic energy + Delta-G solvation = -24205.367372 eV Core-core repulsion = 20512.554116 eV Total energy + Delta-G solvation = -3692.813257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.89096 -41.37626 -39.67238 -37.74020 -37.01801 -34.32704 -34.04304 -32.91389 -32.09155 -29.74326 -28.88240 -25.27903 -24.50507 -23.98915 -23.24886 -21.76274 -20.93098 -19.09669 -18.75756 -18.37049 -17.87962 -17.37340 -17.02767 -16.57412 -16.52269 -16.26777 -15.91470 -15.39434 -15.06452 -14.96185 -14.84361 -14.45551 -14.35169 -14.06536 -13.74408 -13.68442 -13.45360 -13.13258 -12.96131 -12.74484 -12.62801 -12.41597 -12.22421 -11.87969 -11.80664 -11.36921 -11.20186 -11.07325 -10.83835 -10.45042 -10.01035 -9.62925 -9.56508 -8.36004 -6.40255 0.11511 0.31782 1.26704 1.34600 1.44487 1.84415 2.26886 2.42028 2.73647 2.99793 3.21792 3.32130 3.68325 3.85247 3.98328 4.03629 4.19922 4.23316 4.29869 4.34212 4.37249 4.44311 4.48708 4.68622 4.80253 4.86735 4.99186 5.01225 5.02093 5.15036 5.16642 5.25192 5.27356 5.46229 5.53207 5.55781 5.78114 5.92457 6.20506 6.62818 6.90503 7.04950 7.23039 7.60708 8.79365 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.004284 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.630708 B = 6534.198200 C = 7165.315879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.138 4.138 3 C 0.249 3.751 4 H 0.019 0.981 5 C -0.528 4.528 6 H 0.055 0.945 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.935 3.065 10 H -0.261 1.261 11 H -0.294 1.294 12 H -0.262 1.262 13 N -0.689 5.689 14 C 0.506 3.494 15 O -0.578 6.578 16 C -0.062 4.062 17 H 0.129 0.871 18 C 0.094 3.906 19 O -0.585 6.585 20 C -0.080 4.080 21 C -0.066 4.066 22 C -0.162 4.162 23 C 0.082 3.918 24 F -0.148 7.148 25 C -0.153 4.153 26 C -0.076 4.076 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.269 0.731 33 H 0.410 0.590 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.403 0.597 37 H 0.121 0.879 38 H 0.143 0.857 39 H 0.159 0.841 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.936 7.507 -12.875 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.176 4.176 3 C 0.144 3.856 4 H 0.037 0.963 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.170 4.170 8 N -0.574 5.574 9 Si 0.763 3.237 10 H -0.187 1.187 11 H -0.221 1.221 12 H -0.187 1.187 13 N -0.339 5.339 14 C 0.292 3.708 15 O -0.459 6.459 16 C -0.084 4.084 17 H 0.147 0.853 18 C 0.016 3.984 19 O -0.395 6.395 20 C -0.081 4.081 21 C -0.084 4.084 22 C -0.181 4.181 23 C 0.063 3.937 24 F -0.127 7.127 25 C -0.172 4.172 26 C -0.094 4.094 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.247 0.753 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.254 0.746 37 H 0.139 0.861 38 H 0.160 0.840 39 H 0.176 0.824 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.646 6.899 -12.001 20.890 hybrid contribution 0.490 0.275 0.811 0.986 sum -15.156 7.174 -11.190 20.159 Atomic orbital electron populations 1.21739 0.95133 1.00407 1.01582 1.22209 0.95883 0.98683 1.00822 1.18747 0.93094 0.89533 0.84235 0.96317 1.21310 0.90489 1.38266 1.06571 0.92639 1.25525 0.95680 0.95973 0.99777 1.69977 1.10221 1.46460 1.30718 0.86057 0.79300 0.79926 0.78439 1.18687 1.22116 1.18673 1.46074 1.15813 1.55168 1.16873 1.20819 0.81565 0.78541 0.89870 1.90672 1.52226 1.61013 1.41986 1.20296 0.92506 0.99028 0.96527 0.85319 1.22024 0.82547 0.93005 1.00872 1.86328 1.19619 1.39832 1.93688 1.19297 0.93986 0.97589 0.97184 1.20850 0.96102 0.95265 0.96203 1.21224 0.92721 1.03207 1.00932 1.17936 0.79396 0.97612 0.98798 1.91471 1.38816 1.86773 1.95625 1.21334 0.98778 0.97825 0.99254 1.21170 0.90909 0.98678 0.98652 0.94606 0.92577 0.92450 0.91495 0.94021 0.92182 0.75295 0.89397 0.93813 0.74574 0.86146 0.83959 0.82355 0.82148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 8.52 71.98 0.61 -4.51 16 2 C -0.14 -6.02 5.11 30.59 0.16 -5.86 16 3 C 0.25 11.86 1.83 44.25 0.08 11.94 16 4 H 0.02 1.01 6.63 -2.39 -0.02 0.99 16 5 C -0.53 -29.10 9.31 25.60 0.24 -28.86 16 6 H 0.06 3.27 7.98 -2.91 -0.02 3.25 16 7 C 0.03 1.70 5.45 84.66 0.46 2.16 16 8 N -0.93 -56.39 13.96 21.45 0.30 -56.09 16 9 Si 0.94 45.37 24.41 68.60 1.67 47.05 16 10 H -0.26 -11.95 6.84 99.48 0.68 -11.27 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 12 H -0.26 -12.67 6.52 99.48 0.65 -12.02 16 13 N -0.69 -27.08 4.76 -446.12 -2.12 -29.21 16 14 C 0.51 17.78 5.59 87.66 0.49 18.27 16 15 O -0.58 -23.94 12.22 -3.05 -0.04 -23.98 16 16 C -0.06 -1.51 2.67 -12.28 -0.03 -1.54 16 17 H 0.13 2.59 7.87 -2.39 -0.02 2.57 16 18 C 0.09 1.88 6.16 71.98 0.44 2.32 16 19 O -0.59 -12.79 11.43 -148.98 -1.70 -14.49 16 20 C -0.08 -1.84 4.40 -19.86 -0.09 -1.93 16 21 C -0.07 -1.65 7.97 22.26 0.18 -1.47 16 22 C -0.16 -3.76 10.03 22.31 0.22 -3.54 16 23 C 0.08 1.83 7.30 22.37 0.16 1.99 16 24 F -0.15 -3.44 17.27 44.97 0.78 -2.67 16 25 C -0.15 -2.86 10.03 22.31 0.22 -2.64 16 26 C -0.08 -1.42 9.67 22.26 0.22 -1.20 16 27 H 0.03 1.49 7.85 -2.39 -0.02 1.48 16 28 H 0.06 2.12 5.64 -2.39 -0.01 2.11 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.04 1.91 3.24 -2.39 -0.01 1.90 16 32 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.41 15.19 6.60 -92.71 -0.61 14.58 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.04 0.95 7.59 -2.39 -0.02 0.93 16 36 H 0.40 5.49 9.12 -74.06 -0.68 4.82 16 37 H 0.12 3.21 7.58 -2.91 -0.02 3.19 16 38 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 39 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 40 H 0.16 2.02 7.94 -2.91 -0.02 2.00 16 Total: -1.00 -69.77 325.42 1.97 -67.80 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.29 Total: 26.44 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 3.37 Total: -14.86 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -1.82 Total: -85.29 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -1.74 Total: -38.47 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.67 Total: 47.05 kcal Total: -69.77 1.97 -67.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339352607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.590 kcal (2) G-P(sol) polarization free energy of solvation -69.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds