Wall clock time and date at job start Tue Mar 31 2020 06:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46976 * 2 1 4 4 C 1.50696 * 109.47089 * 180.02562 * 3 2 1 5 5 S 1.70624 * 124.52474 * 270.02453 * 4 3 2 6 6 C 1.75828 * 91.56226 * 179.97438 * 5 4 3 7 7 C 1.46586 * 125.45530 * 179.97438 * 6 5 4 8 8 O 1.21703 * 120.00024 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99782 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72446 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31522 * 119.99480 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00435 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99679 * 16 14 12 18 18 H 1.48498 * 109.47278 * 210.00109 * 16 14 12 19 19 H 1.48502 * 109.46821 * 330.00292 * 16 14 12 20 20 C 1.36643 * 109.08762 * 0.24358 * 6 5 4 21 21 C 1.33815 * 124.52172 * 90.00297 * 4 3 2 22 22 C 1.50697 * 122.45246 * 359.97438 * 21 4 3 23 23 C 1.53001 * 109.47012 * 84.99512 * 22 21 4 24 24 H 1.09007 * 109.46752 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47039 * 299.99569 * 1 2 3 26 26 H 1.08990 * 109.47349 * 59.99873 * 1 2 3 27 27 H 1.09003 * 109.47039 * 240.00431 * 2 1 3 28 28 H 1.08998 * 109.47532 * 119.99904 * 2 1 3 29 29 H 1.09003 * 109.46885 * 60.00337 * 3 2 1 30 30 H 1.08998 * 109.46911 * 300.00284 * 3 2 1 31 31 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 32 32 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 33 33 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 34 34 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 35 35 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 36 36 H 0.97004 * 119.99239 * 179.97438 * 15 14 12 37 37 H 1.07995 * 123.35716 * 179.75353 * 20 6 5 38 38 H 1.08995 * 109.47437 * 205.00216 * 22 21 4 39 39 H 1.09005 * 109.46636 * 324.99895 * 22 21 4 40 40 H 1.08995 * 109.47594 * 300.00608 * 23 22 21 41 41 H 1.09000 * 109.46683 * 60.00804 * 23 22 21 42 42 H 1.09008 * 109.46912 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 16 4.5145 1.4418 1.4047 6 6 5.9894 1.4416 0.4474 7 6 7.3527 1.4415 0.9860 8 8 8.3059 1.4418 0.2294 9 7 7.5505 1.4410 2.3192 10 6 8.9130 1.4348 2.8575 11 6 8.8573 1.4286 4.3865 12 6 10.2589 1.4228 4.9402 13 1 11.1048 1.4231 4.2687 14 6 10.4613 1.4172 6.3040 15 7 11.6845 1.4116 6.7872 16 14 8.9982 1.4159 7.4655 17 1 8.6074 0.0156 7.7678 18 1 9.3659 2.1104 8.7255 19 1 7.8582 2.1209 6.8262 20 6 5.6612 1.4476 -0.8790 21 6 4.3048 1.4428 -1.1035 22 6 3.7148 1.4425 -2.4901 23 6 3.3988 2.8794 -2.9102 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 6.7908 1.4404 2.9223 32 1 9.4372 0.5447 2.5094 33 1 9.4424 2.3246 2.5169 34 1 8.3332 2.3186 4.7345 35 1 8.3280 0.5386 4.7272 36 1 11.8268 1.4080 7.7468 37 1 6.3942 1.4526 -1.6721 38 1 4.4296 1.0085 -3.1891 39 1 2.7981 0.8527 -2.4948 40 1 2.6839 3.3135 -2.2112 41 1 4.3154 3.4692 -2.9056 42 1 2.9715 2.8791 -3.9131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342650445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:07 Heat of formation + Delta-G solvation = -43.546606 kcal Electronic energy + Delta-G solvation = -20667.677922 eV Core-core repulsion = 17544.930458 eV Total energy + Delta-G solvation = -3122.747464 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.65549 -38.71265 -35.27598 -34.95117 -32.95967 -32.75942 -30.62323 -29.92187 -27.16736 -25.03270 -24.37593 -22.91933 -21.78992 -20.84610 -20.32454 -18.76579 -17.92856 -16.88830 -16.50542 -15.42981 -15.17125 -15.15596 -14.72807 -14.31017 -14.18814 -14.15852 -13.87108 -13.44849 -13.35958 -13.09597 -12.77220 -12.61424 -12.30818 -12.11876 -11.82274 -11.65871 -11.51887 -11.48509 -11.26120 -11.20825 -11.09344 -10.75288 -10.41910 -10.31733 -9.98310 -9.68924 -9.33337 -8.83013 -8.65616 -8.60052 -8.45548 -6.11617 -4.11870 0.44479 1.35814 1.78320 2.26132 3.25080 3.32752 3.34016 3.39758 3.50038 4.34208 4.37360 4.57405 4.65638 4.67992 4.82612 4.97386 5.05389 5.10958 5.17466 5.21224 5.30930 5.38500 5.41171 5.41690 5.60398 5.60707 5.69925 5.76733 5.83683 5.88509 5.97831 6.08531 6.17940 6.20936 6.32159 6.53372 6.66052 7.10360 7.20993 7.64899 7.79810 8.40367 8.46643 8.92556 9.48370 11.01369 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.021384 B = 0.003157 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.060078 B = 8866.509133 C = 9931.077761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.050 4.050 4 C -0.197 4.197 5 S 0.195 5.805 6 C -0.255 4.255 7 C 0.581 3.419 8 O -0.535 6.535 9 N -0.721 5.721 10 C 0.130 3.870 11 C -0.023 4.023 12 C -0.523 4.523 13 H 0.076 0.924 14 C 0.069 3.931 15 N -0.898 5.898 16 Si 0.881 3.119 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.266 1.266 20 C -0.054 4.054 21 C -0.115 4.115 22 C -0.063 4.063 23 C -0.147 4.147 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.393 0.607 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.023 0.977 35 H 0.018 0.982 36 H 0.265 0.735 37 H 0.151 0.849 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.098 -0.273 -16.033 29.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.090 4.090 4 C -0.317 4.317 5 S 0.465 5.535 6 C -0.375 4.375 7 C 0.367 3.633 8 O -0.414 6.414 9 N -0.370 5.370 10 C 0.009 3.991 11 C -0.061 4.061 12 C -0.561 4.561 13 H 0.095 0.905 14 C -0.133 4.133 15 N -0.536 5.536 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.190 1.190 20 C -0.087 4.087 21 C -0.128 4.128 22 C -0.103 4.103 23 C -0.205 4.205 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.226 0.774 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.169 0.831 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.562 -0.266 -14.768 28.661 hybrid contribution -0.642 -0.012 -0.433 0.775 sum -25.204 -0.277 -15.202 29.435 Atomic orbital electron populations 1.21779 0.95351 1.01937 1.01914 1.21559 0.95845 0.95643 1.02828 1.20239 0.87258 0.98019 1.03438 1.23987 1.00855 1.09520 0.97318 1.83043 0.94382 1.68468 1.07594 1.24687 0.97120 1.17756 0.97985 1.16985 0.86480 0.77126 0.82757 1.90815 1.41800 1.50696 1.58091 1.46237 1.11014 1.74083 1.05715 1.21580 0.79722 1.01942 0.95896 1.19811 0.99161 0.96921 0.90161 1.20900 0.90918 1.51726 0.92557 0.90546 1.24998 0.95719 0.94346 0.98197 1.69910 1.20134 1.50366 1.13204 0.86762 0.83357 0.78560 0.80493 1.20172 1.21214 1.19047 1.20586 0.95469 0.97343 0.95262 1.18615 0.92395 1.05704 0.96118 1.20241 1.00633 0.97786 0.91593 1.21756 1.01905 0.96013 1.00819 0.92463 0.92600 0.92617 0.91502 0.91624 0.90721 0.89754 0.77368 0.91613 0.91579 0.95924 0.96369 0.92533 0.83138 0.90877 0.90998 0.92659 0.92366 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 3 C -0.05 -0.36 5.04 -27.88 -0.14 -0.50 16 4 C -0.20 -1.92 5.53 -35.86 -0.20 -2.12 16 5 S 0.20 2.17 22.10 -107.50 -2.38 -0.21 16 6 C -0.26 -3.65 6.45 -36.79 -0.24 -3.89 16 7 C 0.58 10.41 7.78 -12.89 -0.10 10.31 16 8 O -0.53 -11.37 16.84 5.19 0.09 -11.28 16 9 N -0.72 -12.77 5.55 -61.64 -0.34 -13.11 16 10 C 0.13 2.73 5.61 -4.04 -0.02 2.71 16 11 C -0.02 -0.53 4.16 -27.88 -0.12 -0.64 16 12 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 13 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 16 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 20 C -0.05 -0.68 9.78 -40.43 -0.40 -1.08 16 21 C -0.12 -1.19 5.04 -106.45 -0.54 -1.72 16 22 C -0.06 -0.49 5.54 -27.88 -0.15 -0.64 16 23 C -0.15 -1.04 9.83 37.16 0.37 -0.67 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.46 7.74 -51.93 -0.40 0.05 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.53 6.39 -51.93 -0.33 0.20 16 31 H 0.39 6.03 7.59 -40.82 -0.31 5.72 16 32 H 0.07 1.43 8.14 -51.92 -0.42 1.01 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 35 H 0.02 0.41 7.57 -51.93 -0.39 0.01 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 39 H 0.07 0.48 7.06 -51.93 -0.37 0.11 16 40 H 0.05 0.38 7.24 -51.93 -0.38 0.00 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -32.06 358.91 -9.66 -41.72 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.79 Total: 0.47 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.76 Total: -12.81 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.43 Total: -39.74 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.38 Total: -0.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.06 -9.66 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342650445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.822 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds