Wall clock time and date at job start Tue Mar 31 2020 06:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46976 * 2 1 4 4 C 1.50696 * 109.47089 * 180.02562 * 3 2 1 5 5 S 1.70624 * 124.52474 * 270.02453 * 4 3 2 6 6 C 1.75828 * 91.56226 * 179.97438 * 5 4 3 7 7 C 1.46586 * 125.45530 * 179.97438 * 6 5 4 8 8 O 1.21703 * 120.00024 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99782 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72446 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31522 * 119.99480 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00435 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99679 * 16 14 12 18 18 H 1.48498 * 109.47278 * 210.00109 * 16 14 12 19 19 H 1.48502 * 109.46821 * 330.00292 * 16 14 12 20 20 C 1.36643 * 109.08762 * 0.24358 * 6 5 4 21 21 C 1.33815 * 124.52172 * 90.00297 * 4 3 2 22 22 C 1.50697 * 122.45246 * 359.97438 * 21 4 3 23 23 C 1.53001 * 109.47012 * 84.99512 * 22 21 4 24 24 H 1.09007 * 109.46752 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47039 * 299.99569 * 1 2 3 26 26 H 1.08990 * 109.47349 * 59.99873 * 1 2 3 27 27 H 1.09003 * 109.47039 * 240.00431 * 2 1 3 28 28 H 1.08998 * 109.47532 * 119.99904 * 2 1 3 29 29 H 1.09003 * 109.46885 * 60.00337 * 3 2 1 30 30 H 1.08998 * 109.46911 * 300.00284 * 3 2 1 31 31 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 32 32 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 33 33 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 34 34 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 35 35 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 36 36 H 0.97004 * 119.99239 * 179.97438 * 15 14 12 37 37 H 1.07995 * 123.35716 * 179.75353 * 20 6 5 38 38 H 1.08995 * 109.47437 * 205.00216 * 22 21 4 39 39 H 1.09005 * 109.46636 * 324.99895 * 22 21 4 40 40 H 1.08995 * 109.47594 * 300.00608 * 23 22 21 41 41 H 1.09000 * 109.46683 * 60.00804 * 23 22 21 42 42 H 1.09008 * 109.46912 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 16 4.5145 1.4418 1.4047 6 6 5.9894 1.4416 0.4474 7 6 7.3527 1.4415 0.9860 8 8 8.3059 1.4418 0.2294 9 7 7.5505 1.4410 2.3192 10 6 8.9130 1.4348 2.8575 11 6 8.8573 1.4286 4.3865 12 6 10.2589 1.4228 4.9402 13 1 11.1048 1.4231 4.2687 14 6 10.4613 1.4172 6.3040 15 7 11.6845 1.4116 6.7872 16 14 8.9982 1.4159 7.4655 17 1 8.6074 0.0156 7.7678 18 1 9.3659 2.1104 8.7255 19 1 7.8582 2.1209 6.8262 20 6 5.6612 1.4476 -0.8790 21 6 4.3048 1.4428 -1.1035 22 6 3.7148 1.4425 -2.4901 23 6 3.3988 2.8794 -2.9102 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 6.7908 1.4404 2.9223 32 1 9.4372 0.5447 2.5094 33 1 9.4424 2.3246 2.5169 34 1 8.3332 2.3186 4.7345 35 1 8.3280 0.5386 4.7272 36 1 11.8268 1.4080 7.7468 37 1 6.3942 1.4526 -1.6721 38 1 4.4296 1.0085 -3.1891 39 1 2.7981 0.8527 -2.4948 40 1 2.6839 3.3135 -2.2112 41 1 4.3154 3.4692 -2.9056 42 1 2.9715 2.8791 -3.9131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342650445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:06 Heat of formation + Delta-G solvation = -62.684634 kcal Electronic energy + Delta-G solvation = -20668.507809 eV Core-core repulsion = 17544.930458 eV Total energy + Delta-G solvation = -3123.577351 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.91569 -39.72852 -36.74905 -35.79715 -34.85345 -33.62794 -32.23431 -30.86908 -28.23146 -26.59048 -25.03013 -24.08771 -22.66300 -22.32230 -21.56252 -19.69888 -19.18928 -18.80706 -17.49015 -16.81183 -16.66163 -16.22279 -15.80756 -15.71276 -15.27955 -14.98173 -14.82939 -14.67657 -14.59702 -14.31833 -13.84021 -13.49427 -13.39453 -13.09760 -12.87375 -12.75738 -12.48735 -12.38741 -12.22664 -12.20107 -12.02818 -11.81426 -11.78475 -11.73508 -11.56464 -11.38779 -11.18798 -10.80538 -10.26519 -9.65039 -9.36921 -8.31619 -6.39279 -0.54448 0.42980 0.88559 1.30380 1.38050 1.40654 1.51966 2.08990 2.10161 2.35629 3.03156 3.65678 3.73340 4.04276 4.05387 4.16179 4.24909 4.28744 4.35974 4.36790 4.54367 4.60977 4.68735 4.70295 4.74136 4.84007 4.94464 4.98664 4.99206 5.04222 5.13819 5.23558 5.28049 5.31375 5.34610 5.35837 5.44708 5.48322 5.55570 5.58673 6.19163 6.40507 6.67974 7.04444 7.25281 8.85091 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.021384 B = 0.003157 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.060078 B = 8866.509133 C = 9931.077761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.051 4.051 4 C -0.179 4.179 5 S 0.224 5.776 6 C -0.299 4.299 7 C 0.582 3.418 8 O -0.580 6.580 9 N -0.714 5.714 10 C 0.145 3.855 11 C -0.013 4.013 12 C -0.540 4.540 13 H 0.030 0.970 14 C 0.005 3.995 15 N -0.949 5.949 16 Si 0.957 3.043 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.238 1.238 20 C -0.047 4.047 21 C -0.126 4.126 22 C -0.061 4.061 23 C -0.146 4.146 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.407 0.593 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.269 0.731 37 H 0.143 0.857 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.043 0.957 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.748 -0.235 -16.030 33.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.090 4.090 4 C -0.299 4.299 5 S 0.495 5.505 6 C -0.418 4.418 7 C 0.370 3.630 8 O -0.463 6.463 9 N -0.364 5.364 10 C 0.021 3.979 11 C -0.051 4.051 12 C -0.578 4.578 13 H 0.049 0.951 14 C -0.192 4.192 15 N -0.589 5.589 16 Si 0.779 3.221 17 H -0.189 1.189 18 H -0.210 1.210 19 H -0.161 1.161 20 C -0.081 4.081 21 C -0.138 4.138 22 C -0.100 4.100 23 C -0.203 4.203 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.243 0.757 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.161 0.839 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -29.249 -0.227 -14.773 32.769 hybrid contribution 0.802 -0.031 -0.538 0.966 sum -28.448 -0.257 -15.311 32.307 Atomic orbital electron populations 1.21761 0.94197 1.02289 1.02520 1.21543 0.96805 0.94924 1.02449 1.20408 0.85002 0.98803 1.04812 1.24439 1.02243 1.06701 0.96475 1.82860 0.92386 1.67824 1.07420 1.24332 0.96537 1.21753 0.99227 1.17440 0.87692 0.75695 0.82186 1.90779 1.43773 1.52747 1.58967 1.45967 1.09988 1.74275 1.06189 1.21134 0.81424 1.00462 0.94857 1.19666 0.96261 0.98132 0.91030 1.21208 0.92274 1.51768 0.92545 0.95138 1.26070 0.99278 0.93594 1.00255 1.70077 1.23110 1.51808 1.13905 0.85565 0.79542 0.79451 0.77533 1.18863 1.21031 1.16055 1.20766 0.96737 0.95986 0.94611 1.18780 0.91247 1.05965 0.97772 1.20309 1.01227 0.98603 0.89911 1.21749 1.01434 0.95196 1.01939 0.92303 0.92302 0.91732 0.91596 0.92407 0.89659 0.88089 0.75690 0.93262 0.93253 0.94450 0.94595 0.92254 0.83925 0.90793 0.89254 0.92192 0.93779 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 71.98 0.71 -0.39 16 2 C -0.12 -1.18 5.92 30.60 0.18 -1.00 16 3 C -0.05 -0.54 5.04 29.85 0.15 -0.39 16 4 C -0.18 -2.98 5.53 24.68 0.14 -2.84 16 5 S 0.22 4.51 22.10 -56.49 -1.25 3.26 16 6 C -0.30 -8.42 6.45 24.08 0.16 -8.27 16 7 C 0.58 21.23 7.78 86.42 0.67 21.90 16 8 O -0.58 -25.79 16.84 -4.36 -0.07 -25.87 16 9 N -0.71 -25.20 5.55 -467.15 -2.59 -27.79 16 10 C 0.14 6.20 5.61 86.38 0.48 6.69 16 11 C -0.01 -0.60 4.16 29.85 0.12 -0.48 16 12 C -0.54 -31.23 9.66 25.60 0.25 -30.98 16 13 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 14 C 0.01 0.31 5.47 84.65 0.46 0.77 16 15 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 16 Si 0.96 42.56 27.47 68.60 1.88 44.44 16 17 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.24 -9.42 6.54 99.48 0.65 -8.77 16 20 C -0.05 -1.17 9.78 21.72 0.21 -0.95 16 21 C -0.13 -2.34 5.04 -21.05 -0.11 -2.44 16 22 C -0.06 -0.79 5.54 29.85 0.17 -0.62 16 23 C -0.15 -1.67 9.83 71.98 0.71 -0.97 16 24 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 25 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.07 0.68 7.74 -2.39 -0.02 0.66 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.81 6.39 -2.39 -0.02 0.80 16 31 H 0.41 11.90 7.59 -92.71 -0.70 11.20 16 32 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.04 1.61 7.20 -2.39 -0.02 1.59 16 35 H 0.04 1.53 7.57 -2.38 -0.02 1.51 16 36 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 39 H 0.09 0.86 7.06 -2.38 -0.02 0.85 16 40 H 0.06 0.63 7.24 -2.39 -0.02 0.61 16 41 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -72.18 358.91 2.82 -69.36 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.25 Total: 15.80 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 4.31 Total: -19.97 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -2.29 Total: -87.02 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.07 Total: -25.87 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.88 Total: 44.44 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -1.25 Total: 3.26 kcal Total: -72.18 2.82 -69.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342650445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.671 kcal (2) G-P(sol) polarization free energy of solvation -72.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds