Wall clock time and date at job start Tue Mar 31 2020 07:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46805 * 2 1 4 4 C 1.52994 * 109.47023 * 240.00146 * 2 1 3 5 5 C 1.50693 * 109.47447 * 59.99613 * 4 2 1 6 6 H 1.07997 * 120.00359 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00161 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00446 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99897 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46783 * 90.00093 * 9 7 5 11 11 H 1.48499 * 109.47259 * 209.99833 * 9 7 5 12 12 H 1.48489 * 109.47170 * 330.00255 * 9 7 5 13 13 C 1.52999 * 109.47189 * 119.99575 * 2 1 3 14 14 N 1.46501 * 109.47082 * 300.00340 * 13 2 1 15 15 C 1.34783 * 119.99536 * 179.97438 * 14 13 2 16 16 O 1.21276 * 119.99950 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99432 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.46526 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46909 * 180.02562 * 18 17 15 20 20 C 1.38423 * 122.53613 * 270.00211 * 19 18 17 21 21 C 1.33390 * 114.91977 * 180.02562 * 20 19 18 22 22 S 1.75887 * 109.59565 * 359.75483 * 21 20 19 23 23 C 1.33391 * 122.54338 * 90.02238 * 19 18 17 24 24 H 1.08996 * 109.46972 * 299.99789 * 1 2 3 25 25 H 1.08998 * 109.47164 * 60.00188 * 1 2 3 26 26 H 1.09007 * 109.46630 * 180.02562 * 1 2 3 27 27 H 1.08988 * 109.47072 * 180.02562 * 3 2 1 28 28 H 1.09009 * 109.46676 * 300.00096 * 3 2 1 29 29 H 1.09001 * 109.46856 * 59.99494 * 3 2 1 30 30 H 1.09005 * 109.46925 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.47045 * 299.99057 * 4 2 1 32 32 H 0.96998 * 120.00492 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46674 * 180.02562 * 13 2 1 34 34 H 1.08994 * 109.46989 * 60.00449 * 13 2 1 35 35 H 0.96995 * 120.00320 * 0.02562 * 14 13 2 36 36 H 1.08994 * 109.46984 * 60.00404 * 17 15 14 37 37 H 1.08994 * 109.47395 * 299.99944 * 17 15 14 38 38 H 1.08994 * 109.47301 * 60.00425 * 18 17 15 39 39 H 1.09003 * 109.46866 * 299.99861 * 18 17 15 40 40 H 1.08001 * 122.53963 * 0.04211 * 20 19 18 41 41 H 1.07998 * 125.20164 * 180.02562 * 21 20 19 42 42 H 1.08002 * 125.19887 * 359.95301 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9171 0.8674 -2.3807 7 6 1.8712 -0.4816 -3.7319 8 7 1.4332 0.1385 -4.8058 9 14 2.9464 -1.9996 -3.9033 10 1 2.0887 -3.2111 -3.9487 11 1 3.7383 -1.9065 -5.1560 12 1 3.8667 -2.0880 -2.7413 13 6 2.0401 -0.7211 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8769 -0.4913 3.6696 16 8 2.5742 -1.4773 3.7808 17 6 1.3750 0.2196 4.9000 18 6 1.8850 -0.5018 6.1492 19 6 1.3825 0.2086 7.3797 20 6 2.0872 1.2333 7.9876 21 6 1.5023 1.7541 9.0674 22 16 -0.0273 0.9372 9.3616 23 6 0.2254 -0.1027 7.9658 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8901 29 1 1.6765 1.9564 0.8900 30 1 3.1301 -0.7208 -1.2494 31 1 1.6768 -1.7489 -1.2491 32 1 1.6681 -0.1925 -5.6867 33 1 3.1301 -0.7207 1.2494 34 1 1.6768 -1.7488 1.2493 35 1 0.9937 0.7579 2.3564 36 1 0.2850 0.2203 4.8999 37 1 1.7390 1.2469 4.9000 38 1 2.9749 -0.5021 6.1491 39 1 1.5212 -1.5293 6.1494 40 1 3.0382 1.5848 7.6156 41 1 1.9042 2.5577 9.6666 42 1 -0.4545 -0.8724 7.6315 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345887390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:44 Heat of formation + Delta-G solvation = -31.077526 kcal Electronic energy + Delta-G solvation = -20853.489239 eV Core-core repulsion = 17731.282476 eV Total energy + Delta-G solvation = -3122.206764 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.83807 -38.54524 -37.21503 -33.64269 -33.01074 -32.07000 -29.50713 -27.86805 -26.71783 -26.57424 -24.99583 -22.92950 -22.09857 -20.18691 -18.98302 -18.26862 -17.89861 -17.00033 -16.66664 -15.79033 -15.56708 -15.28521 -14.25029 -14.22892 -13.78564 -13.62085 -13.40647 -13.33796 -13.15697 -12.73904 -12.68814 -12.29201 -12.22015 -12.17501 -12.02468 -11.27054 -11.21441 -11.12709 -11.01972 -10.98700 -10.63022 -10.50116 -9.98402 -9.92319 -9.74919 -9.44885 -9.09832 -9.00439 -8.80365 -8.65901 -8.54501 -6.05200 -4.02524 0.70901 1.37167 1.69185 2.38474 2.76492 3.30849 3.38812 3.41943 3.43041 4.44829 4.57360 4.66090 4.86616 4.90595 5.01410 5.25140 5.26413 5.27430 5.38136 5.46457 5.51203 5.56713 5.62583 5.77198 5.90739 6.09546 6.10782 6.15826 6.17862 6.24549 6.30285 6.47825 6.57989 6.69021 6.89326 7.00070 7.03763 7.19065 7.35553 7.66621 7.78863 8.36809 8.51939 8.98768 9.57505 11.07489 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.040602 B = 0.002371 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.460233 B =11806.498741 C =12052.088805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.722 5.722 15 C 0.506 3.494 16 O -0.548 6.548 17 C -0.134 4.134 18 C -0.045 4.045 19 C -0.099 4.099 20 C -0.129 4.129 21 C -0.212 4.212 22 S 0.084 5.916 23 C -0.210 4.210 24 H 0.031 0.969 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.018 0.982 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.400 0.600 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.141 0.859 41 H 0.163 0.837 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 3.475 26.695 27.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.374 5.374 15 C 0.292 3.708 16 O -0.426 6.426 17 C -0.175 4.175 18 C -0.085 4.085 19 C -0.111 4.111 20 C -0.160 4.160 21 C -0.347 4.347 22 S 0.348 5.652 23 C -0.345 4.345 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.235 0.765 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.159 0.841 41 H 0.181 0.819 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.894 2.916 27.676 27.979 hybrid contribution 1.359 -0.520 -1.385 2.009 sum -1.534 2.396 26.291 26.444 Atomic orbital electron populations 1.21779 0.94820 1.01236 1.00774 1.20688 0.95800 0.95903 0.93951 1.21774 1.00440 0.95604 1.00773 1.19593 0.96287 0.95498 0.92647 1.21074 1.31836 1.13338 0.88615 0.90402 1.25005 0.95716 0.96764 0.95995 1.69897 1.45939 1.40574 0.97883 0.86856 0.81345 0.83903 0.77655 1.20378 1.21500 1.18990 1.21627 0.98849 0.96013 0.83295 1.46207 1.53265 1.32032 1.05878 1.20638 0.80509 0.84761 0.84847 1.90694 1.38296 1.26637 1.86995 1.21642 1.02639 1.00841 0.92369 1.20045 1.01609 0.98473 0.88353 1.19016 0.94862 0.98204 0.99024 1.20166 1.01875 0.97602 0.96308 1.25604 0.99296 1.06513 1.03332 1.84296 1.20762 1.30905 1.29272 1.25522 1.02089 1.06175 1.00710 0.95003 0.90876 0.93432 0.93417 0.90884 0.94989 0.96375 0.96823 0.92789 0.91893 0.91908 0.76511 0.88948 0.88879 0.90007 0.90151 0.84100 0.81917 0.81819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.06 -1.13 0.54 -154.51 -0.08 -1.22 16 3 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 4 C 0.00 -0.06 3.11 -27.89 -0.09 -0.14 16 5 C -0.51 -13.58 8.20 -34.44 -0.28 -13.86 16 6 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 9 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.13 2.06 4.56 -4.04 -0.02 2.04 16 14 N -0.72 -9.61 4.96 -60.29 -0.30 -9.91 16 15 C 0.51 6.79 7.83 -10.98 -0.09 6.70 16 16 O -0.55 -9.52 15.98 5.56 0.09 -9.43 16 17 C -0.13 -1.25 5.68 -27.88 -0.16 -1.41 16 18 C -0.04 -0.42 4.76 -27.88 -0.13 -0.56 16 19 C -0.10 -0.86 5.06 -106.25 -0.54 -1.40 16 20 C -0.13 -1.04 9.98 -41.21 -0.41 -1.45 16 21 C -0.21 -1.55 11.23 29.04 0.33 -1.23 16 22 S 0.08 0.63 23.34 -107.50 -2.51 -1.88 16 23 C -0.21 -1.72 10.98 29.04 0.32 -1.40 16 24 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 25 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 26 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.05 0.81 8.14 -51.94 -0.42 0.39 16 28 H 0.07 1.40 6.62 -51.92 -0.34 1.06 16 29 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 30 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 31 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 4.46 6.16 -40.82 -0.25 4.20 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 39 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -31.23 351.26 -8.51 -39.74 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.54 Total: 1.68 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -0.65 Total: -15.92 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.47 Total: -36.27 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.51 Total: -1.88 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.23 -8.51 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345887390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.663 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds