Wall clock time and date at job start Tue Mar 31 2020 07:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46805 * 2 1 4 4 C 1.52994 * 109.47023 * 240.00146 * 2 1 3 5 5 C 1.50693 * 109.47447 * 59.99613 * 4 2 1 6 6 H 1.07997 * 120.00359 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00161 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00446 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99897 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46783 * 90.00093 * 9 7 5 11 11 H 1.48499 * 109.47259 * 209.99833 * 9 7 5 12 12 H 1.48489 * 109.47170 * 330.00255 * 9 7 5 13 13 C 1.52999 * 109.47189 * 119.99575 * 2 1 3 14 14 N 1.46501 * 109.47082 * 300.00340 * 13 2 1 15 15 C 1.34783 * 119.99536 * 179.97438 * 14 13 2 16 16 O 1.21276 * 119.99950 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99432 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.46526 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46909 * 180.02562 * 18 17 15 20 20 C 1.38423 * 122.53613 * 270.00211 * 19 18 17 21 21 C 1.33390 * 114.91977 * 180.02562 * 20 19 18 22 22 S 1.75887 * 109.59565 * 359.75483 * 21 20 19 23 23 C 1.33391 * 122.54338 * 90.02238 * 19 18 17 24 24 H 1.08996 * 109.46972 * 299.99789 * 1 2 3 25 25 H 1.08998 * 109.47164 * 60.00188 * 1 2 3 26 26 H 1.09007 * 109.46630 * 180.02562 * 1 2 3 27 27 H 1.08988 * 109.47072 * 180.02562 * 3 2 1 28 28 H 1.09009 * 109.46676 * 300.00096 * 3 2 1 29 29 H 1.09001 * 109.46856 * 59.99494 * 3 2 1 30 30 H 1.09005 * 109.46925 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.47045 * 299.99057 * 4 2 1 32 32 H 0.96998 * 120.00492 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46674 * 180.02562 * 13 2 1 34 34 H 1.08994 * 109.46989 * 60.00449 * 13 2 1 35 35 H 0.96995 * 120.00320 * 0.02562 * 14 13 2 36 36 H 1.08994 * 109.46984 * 60.00404 * 17 15 14 37 37 H 1.08994 * 109.47395 * 299.99944 * 17 15 14 38 38 H 1.08994 * 109.47301 * 60.00425 * 18 17 15 39 39 H 1.09003 * 109.46866 * 299.99861 * 18 17 15 40 40 H 1.08001 * 122.53963 * 0.04211 * 20 19 18 41 41 H 1.07998 * 125.20164 * 180.02562 * 21 20 19 42 42 H 1.08002 * 125.19887 * 359.95301 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9171 0.8674 -2.3807 7 6 1.8712 -0.4816 -3.7319 8 7 1.4332 0.1385 -4.8058 9 14 2.9464 -1.9996 -3.9033 10 1 2.0887 -3.2111 -3.9487 11 1 3.7383 -1.9065 -5.1560 12 1 3.8667 -2.0880 -2.7413 13 6 2.0401 -0.7211 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8769 -0.4913 3.6696 16 8 2.5742 -1.4773 3.7808 17 6 1.3750 0.2196 4.9000 18 6 1.8850 -0.5018 6.1492 19 6 1.3825 0.2086 7.3797 20 6 2.0872 1.2333 7.9876 21 6 1.5023 1.7541 9.0674 22 16 -0.0273 0.9372 9.3616 23 6 0.2254 -0.1027 7.9658 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8901 29 1 1.6765 1.9564 0.8900 30 1 3.1301 -0.7208 -1.2494 31 1 1.6768 -1.7489 -1.2491 32 1 1.6681 -0.1925 -5.6867 33 1 3.1301 -0.7207 1.2494 34 1 1.6768 -1.7488 1.2493 35 1 0.9937 0.7579 2.3564 36 1 0.2850 0.2203 4.8999 37 1 1.7390 1.2469 4.9000 38 1 2.9749 -0.5021 6.1491 39 1 1.5212 -1.5293 6.1494 40 1 3.0382 1.5848 7.6156 41 1 1.9042 2.5577 9.6666 42 1 -0.4545 -0.8724 7.6315 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345887390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:43 Heat of formation + Delta-G solvation = -49.364667 kcal Electronic energy + Delta-G solvation = -20854.282229 eV Core-core repulsion = 17731.282476 eV Total energy + Delta-G solvation = -3122.999754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.93560 -39.28592 -38.57375 -35.17586 -34.06172 -33.63049 -30.24248 -29.64878 -27.97731 -27.87091 -25.97875 -24.29754 -23.19300 -21.28722 -19.73628 -19.57440 -18.90162 -18.53352 -17.81120 -16.82402 -16.73087 -16.12857 -16.05376 -15.46750 -15.26978 -14.82769 -14.48681 -14.25607 -14.15017 -14.02492 -13.82327 -13.77946 -13.20397 -12.91258 -12.88267 -12.84535 -12.71630 -12.59005 -12.29961 -12.15837 -11.91881 -11.77525 -11.59365 -11.50781 -11.28356 -10.92997 -10.78158 -10.70860 -10.00079 -9.67181 -9.24654 -8.22716 -6.22703 0.13732 0.81659 1.12660 1.35272 1.38160 1.48111 1.72299 1.77382 2.36153 2.38623 3.12640 3.78427 3.95140 4.01691 4.07001 4.15620 4.18152 4.27515 4.37682 4.62936 4.65746 4.68102 4.72363 4.75832 4.83033 4.91805 4.96536 5.03573 5.10337 5.16977 5.22167 5.30577 5.38491 5.41175 5.51114 5.55377 5.58376 5.63298 5.70295 5.77023 6.37843 6.64740 6.84313 7.33415 7.40061 8.92805 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.040602 B = 0.002371 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.460233 B =11806.498741 C =12052.088805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.058 4.058 3 C -0.124 4.124 4 C -0.005 4.005 5 C -0.501 4.501 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.934 3.066 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.252 1.252 13 C 0.138 3.862 14 N -0.713 5.713 15 C 0.506 3.494 16 O -0.591 6.591 17 C -0.123 4.123 18 C -0.040 4.040 19 C -0.106 4.106 20 C -0.143 4.143 21 C -0.213 4.213 22 S 0.090 5.910 23 C -0.219 4.219 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.014 0.986 31 H 0.012 0.988 32 H 0.262 0.738 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.413 0.587 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.151 0.849 41 H 0.183 0.817 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.332 3.798 29.210 29.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.058 4.058 3 C -0.181 4.181 4 C -0.043 4.043 5 C -0.539 4.539 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.593 5.593 9 Si 0.759 3.241 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.176 1.176 13 C 0.014 3.986 14 N -0.366 5.366 15 C 0.295 3.705 16 O -0.471 6.471 17 C -0.163 4.163 18 C -0.080 4.080 19 C -0.119 4.119 20 C -0.173 4.173 21 C -0.348 4.348 22 S 0.354 5.646 23 C -0.354 4.354 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.251 0.749 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.169 0.831 41 H 0.200 0.800 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.994 3.261 30.216 30.539 hybrid contribution 1.339 -0.565 -2.096 2.550 sum -1.655 2.696 28.120 28.298 Atomic orbital electron populations 1.21709 0.93895 1.01207 1.01321 1.20550 0.96484 0.96122 0.92683 1.21706 1.00198 0.94885 1.01327 1.19579 0.95909 0.95484 0.93292 1.21367 1.30193 1.12265 0.90062 0.92914 1.25840 0.97484 0.99905 0.95940 1.70036 1.48144 1.42658 0.98423 0.85900 0.79885 0.80415 0.77892 1.19743 1.21465 1.17618 1.21239 0.98123 0.95532 0.83742 1.46049 1.53300 1.32232 1.05010 1.21341 0.79441 0.84142 0.85607 1.90684 1.40233 1.28686 1.87544 1.21637 1.03777 1.01132 0.89712 1.19935 1.00909 0.98082 0.89077 1.18984 0.95252 0.98660 0.98974 1.20323 1.02458 0.97763 0.96752 1.25904 0.99005 1.06691 1.03175 1.84298 1.20907 1.30606 1.28796 1.25725 1.02225 1.06519 1.00966 0.91083 0.93672 0.93759 0.93774 0.93674 0.91060 0.96806 0.96957 0.92868 0.92957 0.92915 0.74903 0.86792 0.86665 0.91108 0.91323 0.83148 0.79973 0.80916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 2 C -0.06 -2.01 0.54 -52.18 -0.03 -2.04 16 3 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 4 C 0.00 -0.21 3.11 29.84 0.09 -0.12 16 5 C -0.50 -27.08 8.20 25.60 0.21 -26.87 16 6 H 0.05 3.07 5.92 -2.91 -0.02 3.05 16 7 C 0.00 0.26 5.47 84.65 0.46 0.72 16 8 N -0.95 -58.57 13.96 21.45 0.30 -58.27 16 9 Si 0.93 44.47 27.47 68.60 1.88 46.35 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 13 C 0.14 4.30 4.56 86.38 0.39 4.70 16 14 N -0.71 -16.94 4.96 -463.06 -2.30 -19.24 16 15 C 0.51 12.40 7.83 87.66 0.69 13.08 16 16 O -0.59 -19.87 15.98 -3.02 -0.05 -19.92 16 17 C -0.12 -1.90 5.68 29.85 0.17 -1.73 16 18 C -0.04 -0.69 4.76 29.85 0.14 -0.54 16 19 C -0.11 -1.64 5.06 -20.92 -0.11 -1.74 16 20 C -0.14 -1.98 9.98 21.22 0.21 -1.77 16 21 C -0.21 -2.60 11.23 66.72 0.75 -1.85 16 22 S 0.09 1.16 23.34 -56.49 -1.32 -0.16 16 23 C -0.22 -3.14 10.98 66.72 0.73 -2.41 16 24 H 0.07 1.72 6.86 -2.39 -0.02 1.71 16 25 H 0.04 1.72 6.62 -2.39 -0.02 1.70 16 26 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.04 1.72 6.62 -2.38 -0.02 1.70 16 29 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 30 H 0.01 0.63 7.20 -2.38 -0.02 0.61 16 31 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 32 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.41 7.52 6.16 -92.71 -0.57 6.95 16 36 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.37 8.09 -2.39 -0.02 1.35 16 39 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 40 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 42 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -68.84 351.26 3.78 -65.06 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.38 Total: 13.65 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 4.88 Total: -27.47 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -2.00 Total: -77.51 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.05 Total: -19.92 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -1.32 Total: -0.16 kcal Total: -68.84 3.78 -65.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345887390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.693 kcal (2) G-P(sol) polarization free energy of solvation -68.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds