Wall clock time and date at job start Tue Mar 31 2020 08:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 H 1.08999 * 109.47367 * 305.69786 * 3 2 1 5 5 C 1.50700 * 109.47481 * 185.69361 * 3 2 1 6 6 H 1.08005 * 120.00207 * 275.01103 * 5 3 2 7 7 C 1.37883 * 119.99724 * 95.00208 * 5 3 2 8 8 N 1.31513 * 119.99750 * 184.83107 * 7 5 3 9 9 Si 1.86794 * 120.00199 * 4.83666 * 7 5 3 10 10 H 1.48506 * 109.47231 * 84.85641 * 9 7 5 11 11 H 1.48496 * 109.47318 * 204.85861 * 9 7 5 12 12 H 1.48501 * 109.47379 * 324.86059 * 9 7 5 13 13 N 1.46500 * 109.46903 * 65.69654 * 3 2 1 14 14 C 1.34783 * 120.00196 * 275.00012 * 13 3 2 15 15 O 1.21277 * 119.99455 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99989 * 180.02562 * 14 13 3 17 17 C 1.50700 * 109.46585 * 180.02562 * 16 14 13 18 18 C 1.38253 * 119.95575 * 264.71593 * 17 16 14 19 19 C 1.38130 * 120.08345 * 179.76899 * 18 17 16 20 20 C 1.38769 * 119.98953 * 0.53294 * 19 18 17 21 21 O 1.35902 * 120.04222 * 179.70077 * 20 19 18 22 22 C 1.42903 * 116.99913 * 0.02562 * 21 20 19 23 23 C 1.38668 * 119.91602 * 359.72614 * 20 19 18 24 24 C 1.38376 * 119.92353 * 359.97438 * 23 20 19 25 25 F 1.35098 * 120.00306 * 180.02562 * 24 23 20 26 26 H 1.08998 * 109.46690 * 299.99440 * 1 2 3 27 27 H 1.09007 * 109.47018 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47534 * 60.00073 * 1 2 3 29 29 H 1.09001 * 109.47409 * 120.00702 * 2 1 3 30 30 H 1.09008 * 109.46643 * 240.00581 * 2 1 3 31 31 H 0.97001 * 120.00197 * 180.02562 * 8 7 5 32 32 H 0.97003 * 120.00313 * 95.00035 * 13 3 2 33 33 H 1.08997 * 109.46535 * 299.99582 * 16 14 13 34 34 H 1.08993 * 109.47494 * 59.99816 * 16 14 13 35 35 H 1.07999 * 119.95814 * 0.02562 * 18 17 16 36 36 H 1.07996 * 120.00879 * 180.25415 * 19 18 17 37 37 H 1.09004 * 109.46864 * 300.00036 * 22 21 20 38 38 H 1.08997 * 109.47053 * 60.00014 * 22 21 20 39 39 H 1.09000 * 109.47050 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.03920 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5958 1.9849 -0.8345 5 6 3.5404 1.4449 -0.1410 6 1 4.1651 1.3333 0.7330 7 6 4.1156 1.5894 -1.3857 8 7 5.4204 1.4966 -1.5219 9 14 3.0417 1.9172 -2.8785 10 1 2.7752 3.3742 -2.9863 11 1 3.7400 1.4498 -4.1029 12 1 1.7561 1.1884 -2.7332 13 7 1.6668 2.0923 1.2588 14 6 0.4508 2.6587 1.3903 15 8 -0.3341 2.6307 0.4662 16 6 0.0672 3.3277 2.6850 17 6 -1.3322 3.8754 2.5719 18 6 -1.5297 5.1974 2.2191 19 6 -2.8113 5.7010 2.1100 20 6 -3.9023 4.8823 2.3655 21 8 -5.1635 5.3782 2.2644 22 6 -5.2927 6.7512 1.8900 23 6 -3.7038 3.5577 2.7245 24 6 -2.4186 3.0553 2.8267 25 9 -2.2234 1.7649 3.1759 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 5.8251 1.5986 -2.3975 32 1 2.2947 2.1150 1.9978 33 1 0.1078 2.6002 3.4957 34 1 0.7609 4.1423 2.8926 35 1 -0.6809 5.8363 2.0245 36 1 -2.9643 6.7328 1.8304 37 1 -4.7899 7.3776 2.6270 38 1 -4.8381 6.9053 0.9114 39 1 -6.3486 7.0180 1.8458 40 1 -4.5515 2.9186 2.9234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353498340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:59 Heat of formation + Delta-G solvation = -104.448282 kcal Electronic energy + Delta-G solvation = -23865.450797 eV Core-core repulsion = 20173.849263 eV Total energy + Delta-G solvation = -3691.601535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.87179 -40.28449 -39.17929 -37.42653 -35.13422 -32.54622 -32.24935 -31.28055 -30.72254 -28.26979 -27.54361 -26.27573 -23.03443 -22.77946 -21.84790 -20.25096 -19.49375 -18.60877 -17.35681 -17.09439 -16.18268 -16.14976 -15.89257 -15.84965 -15.26645 -15.18546 -14.94873 -14.42315 -14.05687 -13.72221 -13.31881 -13.02326 -12.80485 -12.74904 -12.50241 -12.34954 -11.95501 -11.87157 -11.69148 -11.51028 -11.08360 -11.05561 -10.93744 -10.63916 -10.62376 -9.95662 -9.83134 -9.21360 -9.10792 -8.92653 -8.69956 -8.23223 -7.96053 -6.23494 -4.26713 1.08979 1.18982 2.92833 3.25753 3.33483 3.34586 3.42639 3.44249 4.15280 4.33008 4.35306 4.56855 4.70147 4.76838 4.85884 4.88266 5.12932 5.15487 5.19314 5.24663 5.51009 5.56613 5.63245 5.90975 5.94095 6.10099 6.12504 6.14027 6.30482 6.31065 6.60310 6.69485 6.83156 7.01727 7.05869 7.13405 7.32661 7.38651 7.60573 8.15626 8.60302 8.77842 9.03946 9.39266 10.88255 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022704 B = 0.003893 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.975154 B = 7189.856813 C = 7578.257439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.050 0.950 5 C -0.530 4.530 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.890 5.890 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.704 5.704 14 C 0.502 3.498 15 O -0.546 6.546 16 C -0.104 4.104 17 C -0.123 4.123 18 C -0.040 4.040 19 C -0.217 4.217 20 C 0.149 3.851 21 O -0.316 6.316 22 C 0.027 3.973 23 C -0.190 4.190 24 C 0.155 3.845 25 F -0.130 7.130 26 H 0.051 0.949 27 H 0.029 0.971 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.267 0.733 32 H 0.393 0.607 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.783 9.219 10.110 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.135 3.865 4 H 0.068 0.932 5 C -0.568 4.568 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.353 5.353 14 C 0.287 3.713 15 O -0.425 6.425 16 C -0.144 4.144 17 C -0.124 4.124 18 C -0.058 4.058 19 C -0.236 4.236 20 C 0.104 3.896 21 O -0.229 6.229 22 C -0.068 4.068 23 C -0.209 4.209 24 C 0.135 3.865 25 F -0.108 7.108 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.226 0.774 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.337 9.042 9.330 21.665 hybrid contribution 0.070 0.179 -0.555 0.587 sum -17.266 9.221 8.776 21.452 Atomic orbital electron populations 1.21899 0.97359 0.98818 1.02090 1.22068 0.93693 0.99480 1.01132 1.19149 0.95376 0.89093 0.82883 0.93202 1.21029 0.88750 1.51590 0.95427 0.90357 1.24936 0.94854 0.93723 0.98793 1.69883 1.09763 1.48457 1.24483 0.86908 0.81323 0.79582 0.82232 1.19933 1.21233 1.18334 1.46584 1.14413 1.56058 1.18204 1.20298 0.82792 0.79377 0.88881 1.90673 1.50742 1.59747 1.41308 1.20626 0.93628 1.01875 0.98271 1.19304 0.93859 0.94210 1.05078 1.20668 0.96805 0.93845 0.94477 1.21195 0.92399 1.00706 1.09269 1.18546 0.83641 0.92233 0.95200 1.86052 1.24601 1.28134 1.84130 1.23087 1.03604 0.80010 1.00094 1.20126 0.96376 0.94643 1.09768 1.17028 0.92734 0.78572 0.98161 1.91508 1.95823 1.34450 1.89049 0.93007 0.95183 0.93232 0.93041 0.92213 0.92263 0.77407 0.88266 0.87867 0.84709 0.84948 0.92480 0.92375 0.88188 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.53 37.16 0.32 -2.68 16 2 C -0.12 -2.76 5.59 -26.73 -0.15 -2.90 16 3 C 0.24 5.61 1.89 -69.09 -0.13 5.47 16 4 H 0.05 1.29 4.73 -51.93 -0.25 1.05 16 5 C -0.53 -14.14 9.05 -34.44 -0.31 -14.46 16 6 H 0.08 2.20 8.06 -52.48 -0.42 1.77 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 9 Si 0.87 21.65 26.99 -169.99 -4.59 17.06 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.26 -6.37 6.82 56.52 0.39 -5.99 16 13 N -0.70 -13.89 5.03 -54.93 -0.28 -14.16 16 14 C 0.50 9.40 6.42 -10.98 -0.07 9.33 16 15 O -0.55 -12.14 13.18 5.56 0.07 -12.06 16 16 C -0.10 -1.43 5.60 -29.03 -0.16 -1.59 16 17 C -0.12 -1.74 4.38 -104.53 -0.46 -2.19 16 18 C -0.04 -0.49 9.67 -39.62 -0.38 -0.87 16 19 C -0.22 -2.44 9.04 -39.42 -0.36 -2.79 16 20 C 0.15 1.83 6.68 -39.23 -0.26 1.57 16 21 O -0.32 -3.47 10.50 -19.43 -0.20 -3.67 16 22 C 0.03 0.18 9.81 101.05 0.99 1.17 16 23 C -0.19 -2.52 9.97 -39.37 -0.39 -2.91 16 24 C 0.15 2.27 7.24 -39.44 -0.29 1.98 16 25 F -0.13 -2.02 16.56 2.25 0.04 -1.98 16 26 H 0.05 1.08 5.63 -51.93 -0.29 0.79 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.10 7.89 -51.93 -0.41 0.69 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.39 6.76 8.59 -40.82 -0.35 6.41 16 33 H 0.10 1.21 7.79 -51.93 -0.40 0.81 16 34 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16 35 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 37 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 38 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -32.60 335.93 -6.23 -38.83 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.36 Total: 4.99 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.75 Total: -8.71 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.50 Total: -39.52 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.13 Total: -15.73 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.59 Total: 17.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.60 -6.23 -38.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353498340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.617 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds