Wall clock time and date at job start Tue Mar 31 2020 08:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47047 * 2 1 4 4 H 1.08999 * 109.47367 * 305.69786 * 3 2 1 5 5 C 1.50700 * 109.47481 * 185.69361 * 3 2 1 6 6 H 1.08005 * 120.00207 * 275.01103 * 5 3 2 7 7 C 1.37883 * 119.99724 * 95.00208 * 5 3 2 8 8 N 1.31513 * 119.99750 * 184.83107 * 7 5 3 9 9 Si 1.86794 * 120.00199 * 4.83666 * 7 5 3 10 10 H 1.48506 * 109.47231 * 84.85641 * 9 7 5 11 11 H 1.48496 * 109.47318 * 204.85861 * 9 7 5 12 12 H 1.48501 * 109.47379 * 324.86059 * 9 7 5 13 13 N 1.46500 * 109.46903 * 65.69654 * 3 2 1 14 14 C 1.34783 * 120.00196 * 275.00012 * 13 3 2 15 15 O 1.21277 * 119.99455 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99989 * 180.02562 * 14 13 3 17 17 C 1.50700 * 109.46585 * 180.02562 * 16 14 13 18 18 C 1.38253 * 119.95575 * 264.71593 * 17 16 14 19 19 C 1.38130 * 120.08345 * 179.76899 * 18 17 16 20 20 C 1.38769 * 119.98953 * 0.53294 * 19 18 17 21 21 O 1.35902 * 120.04222 * 179.70077 * 20 19 18 22 22 C 1.42903 * 116.99913 * 0.02562 * 21 20 19 23 23 C 1.38668 * 119.91602 * 359.72614 * 20 19 18 24 24 C 1.38376 * 119.92353 * 359.97438 * 23 20 19 25 25 F 1.35098 * 120.00306 * 180.02562 * 24 23 20 26 26 H 1.08998 * 109.46690 * 299.99440 * 1 2 3 27 27 H 1.09007 * 109.47018 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47534 * 60.00073 * 1 2 3 29 29 H 1.09001 * 109.47409 * 120.00702 * 2 1 3 30 30 H 1.09008 * 109.46643 * 240.00581 * 2 1 3 31 31 H 0.97001 * 120.00197 * 180.02562 * 8 7 5 32 32 H 0.97003 * 120.00313 * 95.00035 * 13 3 2 33 33 H 1.08997 * 109.46535 * 299.99582 * 16 14 13 34 34 H 1.08993 * 109.47494 * 59.99816 * 16 14 13 35 35 H 1.07999 * 119.95814 * 0.02562 * 18 17 16 36 36 H 1.07996 * 120.00879 * 180.25415 * 19 18 17 37 37 H 1.09004 * 109.46864 * 300.00036 * 22 21 20 38 38 H 1.08997 * 109.47053 * 60.00014 * 22 21 20 39 39 H 1.09000 * 109.47050 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.03920 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5958 1.9849 -0.8345 5 6 3.5404 1.4449 -0.1410 6 1 4.1651 1.3333 0.7330 7 6 4.1156 1.5894 -1.3857 8 7 5.4204 1.4966 -1.5219 9 14 3.0417 1.9172 -2.8785 10 1 2.7752 3.3742 -2.9863 11 1 3.7400 1.4498 -4.1029 12 1 1.7561 1.1884 -2.7332 13 7 1.6668 2.0923 1.2588 14 6 0.4508 2.6587 1.3903 15 8 -0.3341 2.6307 0.4662 16 6 0.0672 3.3277 2.6850 17 6 -1.3322 3.8754 2.5719 18 6 -1.5297 5.1974 2.2191 19 6 -2.8113 5.7010 2.1100 20 6 -3.9023 4.8823 2.3655 21 8 -5.1635 5.3782 2.2644 22 6 -5.2927 6.7512 1.8900 23 6 -3.7038 3.5577 2.7245 24 6 -2.4186 3.0553 2.8267 25 9 -2.2234 1.7649 3.1759 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 5.8251 1.5986 -2.3975 32 1 2.2947 2.1150 1.9978 33 1 0.1078 2.6002 3.4957 34 1 0.7609 4.1423 2.8926 35 1 -0.6809 5.8363 2.0245 36 1 -2.9643 6.7328 1.8304 37 1 -4.7899 7.3776 2.6270 38 1 -4.8381 6.9053 0.9114 39 1 -6.3486 7.0180 1.8458 40 1 -4.5515 2.9186 2.9234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353498340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:58 Heat of formation + Delta-G solvation = -125.798189 kcal Electronic energy + Delta-G solvation = -23866.376599 eV Core-core repulsion = 20173.849263 eV Total energy + Delta-G solvation = -3692.527336 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.97232 -41.23072 -40.58754 -38.40065 -36.87256 -34.37645 -33.70965 -32.71907 -31.69154 -29.66640 -28.71523 -27.33634 -24.70263 -23.93757 -22.98617 -21.75886 -21.16727 -19.50422 -19.19439 -18.05006 -17.66818 -17.47521 -17.01703 -16.82192 -16.51965 -16.33051 -16.17197 -15.88032 -15.51049 -14.84379 -14.77599 -14.61700 -14.31166 -13.82312 -13.77039 -13.71223 -13.30402 -13.26758 -12.96083 -12.75360 -12.67012 -12.49592 -12.33283 -11.91967 -11.87608 -11.87504 -11.68283 -11.19804 -10.83490 -10.65346 -9.89441 -9.65098 -9.18807 -8.38638 -6.43731 0.12609 0.23140 1.28325 1.32905 1.44285 1.88009 2.17620 2.27066 2.38939 2.74191 3.06793 3.38545 3.65855 3.70842 3.94107 4.16511 4.21472 4.28815 4.31916 4.41039 4.42102 4.42954 4.55394 4.56637 4.64690 4.76518 4.83934 4.98888 5.00719 5.09549 5.20975 5.25655 5.27811 5.35143 5.43494 5.55306 5.67696 5.82567 6.15663 6.33095 6.61876 6.98501 7.22652 7.56439 8.76462 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022704 B = 0.003893 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.975154 B = 7189.856813 C = 7578.257439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.243 3.757 4 H 0.029 0.971 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.034 3.966 8 N -0.930 5.930 9 Si 0.924 3.076 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.259 1.259 13 N -0.705 5.705 14 C 0.500 3.500 15 O -0.581 6.581 16 C -0.093 4.093 17 C -0.142 4.142 18 C -0.043 4.043 19 C -0.212 4.212 20 C 0.147 3.853 21 O -0.330 6.330 22 C 0.016 3.984 23 C -0.205 4.205 24 C 0.132 3.868 25 F -0.142 7.142 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.270 0.730 32 H 0.405 0.595 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.121 0.879 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.261 10.727 10.633 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.139 3.861 4 H 0.047 0.953 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.166 4.166 8 N -0.569 5.569 9 Si 0.750 3.250 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.183 1.183 13 N -0.355 5.355 14 C 0.288 3.712 15 O -0.462 6.462 16 C -0.132 4.132 17 C -0.144 4.144 18 C -0.061 4.061 19 C -0.230 4.230 20 C 0.102 3.898 21 O -0.244 6.244 22 C -0.078 4.078 23 C -0.224 4.224 24 C 0.113 3.887 25 F -0.121 7.121 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.241 0.759 33 H 0.133 0.867 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.181 0.819 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.826 10.563 9.884 23.742 hybrid contribution 0.434 -0.219 -0.652 0.813 sum -18.392 10.344 9.232 23.032 Atomic orbital electron populations 1.21753 0.96068 1.00051 1.01049 1.21991 0.94717 0.98379 1.01106 1.18849 0.93127 0.90051 0.84076 0.95308 1.21227 0.90310 1.50175 0.94550 0.92452 1.25572 0.95688 0.94053 1.01297 1.69977 1.11191 1.50501 1.25236 0.86086 0.79843 0.79311 0.79796 1.19847 1.20428 1.18337 1.46340 1.15530 1.56324 1.17283 1.21080 0.81553 0.78410 0.90195 1.90656 1.51560 1.60867 1.43114 1.20597 0.94336 1.02846 0.95430 1.19450 0.93595 0.95069 1.06288 1.21003 0.98061 0.93444 0.93629 1.21538 0.91632 1.01975 1.07888 1.18684 0.84622 0.92026 0.94518 1.86047 1.23901 1.30437 1.83986 1.23433 1.05470 0.78114 1.00805 1.20288 0.96198 0.95623 1.10294 1.17300 0.93635 0.78353 0.99434 1.91466 1.95943 1.35309 1.89377 0.93253 0.92770 0.95004 0.92011 0.93299 0.92070 0.75940 0.86655 0.84673 0.82590 0.81940 0.90859 0.91787 0.86068 0.83723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.53 71.98 0.61 -4.73 16 2 C -0.12 -5.34 5.59 30.59 0.17 -5.17 16 3 C 0.24 11.38 1.89 44.24 0.08 11.46 16 4 H 0.03 1.49 4.73 -2.39 -0.01 1.48 16 5 C -0.52 -28.13 9.05 25.60 0.23 -27.90 16 6 H 0.06 3.26 8.06 -2.91 -0.02 3.24 16 7 C 0.03 1.92 5.47 84.66 0.46 2.39 16 8 N -0.93 -55.32 13.96 21.45 0.30 -55.02 16 9 Si 0.92 44.84 26.99 68.60 1.85 46.69 16 10 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.26 -12.45 6.82 99.48 0.68 -11.78 16 13 N -0.71 -27.09 5.03 -446.10 -2.24 -29.33 16 14 C 0.50 18.06 6.42 87.66 0.56 18.63 16 15 O -0.58 -25.40 13.18 -3.02 -0.04 -25.44 16 16 C -0.09 -2.35 5.60 29.10 0.16 -2.18 16 17 C -0.14 -3.78 4.38 -19.80 -0.09 -3.87 16 18 C -0.04 -0.95 9.67 22.25 0.22 -0.74 16 19 C -0.21 -4.18 9.04 22.37 0.20 -3.98 16 20 C 0.15 3.37 6.68 22.50 0.15 3.52 16 21 O -0.33 -6.59 10.50 -92.45 -0.97 -7.56 16 22 C 0.02 0.17 9.81 113.37 1.11 1.28 16 23 C -0.20 -5.32 9.97 22.41 0.22 -5.09 16 24 C 0.13 3.79 7.24 22.36 0.16 3.95 16 25 F -0.14 -4.40 16.56 44.97 0.74 -3.65 16 26 H 0.05 2.01 5.63 -2.39 -0.01 1.99 16 27 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.03 1.37 7.89 -2.39 -0.02 1.36 16 29 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.41 13.46 8.59 -92.71 -0.80 12.67 16 33 H 0.12 2.56 7.79 -2.39 -0.02 2.54 16 34 H 0.14 2.54 8.05 -2.39 -0.02 2.52 16 35 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.16 2.11 6.30 -2.91 -0.02 2.09 16 37 H 0.07 0.55 7.66 -2.38 -0.02 0.53 16 38 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 39 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -70.69 335.93 4.15 -66.54 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.24 Total: 20.20 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 4.27 Total: -12.44 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -1.94 Total: -84.35 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -1.01 Total: -33.00 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.74 Total: -3.65 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.85 Total: 46.69 kcal Total: -70.69 4.15 -66.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353498340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.255 kcal (2) G-P(sol) polarization free energy of solvation -70.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds