Wall clock time and date at job start Tue Mar 31 2020 08:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47096 * 2 1 4 4 H 1.09007 * 109.46924 * 305.86938 * 3 2 1 5 5 C 1.50706 * 109.47067 * 185.87560 * 3 2 1 6 6 H 1.07999 * 119.99438 * 244.81429 * 5 3 2 7 7 C 1.37872 * 120.00533 * 64.80611 * 5 3 2 8 8 N 1.31523 * 119.99537 * 5.97173 * 7 5 3 9 9 Si 1.86799 * 120.00413 * 185.97204 * 7 5 3 10 10 H 1.48502 * 109.46780 * 94.99411 * 9 7 5 11 11 H 1.48500 * 109.47050 * 214.99668 * 9 7 5 12 12 H 1.48496 * 109.46785 * 334.99692 * 9 7 5 13 13 N 1.46496 * 109.47606 * 65.86945 * 3 2 1 14 14 C 1.34771 * 120.00354 * 275.00304 * 13 3 2 15 15 O 1.21284 * 119.99908 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00407 * 179.97438 * 14 13 3 17 17 H 1.09005 * 109.47273 * 304.99910 * 16 14 13 18 18 C 1.52998 * 109.47161 * 64.99798 * 16 14 13 19 19 O 1.42899 * 109.47330 * 184.99811 * 16 14 13 20 20 C 1.35956 * 117.00188 * 156.19064 * 19 16 14 21 21 C 1.38668 * 120.06151 * 357.21286 * 20 19 16 22 22 C 1.38175 * 119.96899 * 179.72078 * 21 20 19 23 23 C 1.38261 * 120.09645 * 0.55524 * 22 21 20 24 24 C 1.38255 * 120.12603 * 359.72314 * 23 22 21 25 25 C 1.38339 * 120.02913 * 359.97438 * 24 23 22 26 26 F 1.35094 * 120.04834 * 180.02562 * 25 24 23 27 27 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46779 * 60.00646 * 1 2 3 29 29 H 1.08996 * 109.46976 * 299.99924 * 1 2 3 30 30 H 1.09006 * 109.47099 * 119.99893 * 2 1 3 31 31 H 1.08994 * 109.47112 * 239.99307 * 2 1 3 32 32 H 0.96996 * 119.99524 * 180.02562 * 8 7 5 33 33 H 0.97004 * 119.99753 * 94.99515 * 13 3 2 34 34 H 1.09004 * 109.47345 * 300.00394 * 18 16 14 35 35 H 1.09005 * 109.46935 * 59.99906 * 18 16 14 36 36 H 1.08994 * 109.47464 * 180.02562 * 18 16 14 37 37 H 1.07999 * 120.01292 * 359.97438 * 21 20 19 38 38 H 1.08002 * 119.95327 * 180.28154 * 22 21 20 39 39 H 1.08005 * 119.94191 * 179.74577 * 23 22 21 40 40 H 1.08001 * 119.99134 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5934 1.9857 -0.8328 5 6 3.5401 1.4450 -0.1455 6 1 4.1598 1.8148 0.6580 7 6 4.1212 0.9750 -1.3040 8 7 3.3673 0.6346 -2.3266 9 14 5.9792 0.8217 -1.4215 10 1 6.3842 -0.5646 -1.0761 11 1 6.4151 1.1344 -2.8062 12 1 6.6151 1.7734 -0.4755 13 7 1.6705 2.0912 1.2604 14 6 0.4550 2.6574 1.3959 15 8 -0.3327 2.6304 0.4742 16 6 0.0747 3.3242 2.6927 17 1 0.2027 2.6199 3.5147 18 6 0.9707 4.5432 2.9214 19 8 -1.2906 3.7415 2.6313 20 6 -1.9429 3.8954 3.8142 21 6 -1.3007 3.5945 5.0058 22 6 -1.9635 3.7571 6.2073 23 6 -3.2702 4.2086 6.2227 24 6 -3.9162 4.5043 5.0367 25 6 -3.2555 4.3494 3.8311 26 9 -3.8862 4.6387 2.6720 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.7761 0.3037 -3.1415 33 1 2.3006 2.1130 1.9976 34 1 2.0122 4.2249 2.9683 35 1 0.8427 5.2475 2.0994 36 1 0.6959 5.0252 3.8596 37 1 -0.2816 3.2371 4.9950 38 1 -1.4615 3.5269 7.1354 39 1 -3.7872 4.3308 7.1630 40 1 -4.9371 4.8564 5.0512 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358054742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:43 Heat of formation + Delta-G solvation = -98.183280 kcal Electronic energy + Delta-G solvation = -23847.459734 eV Core-core repulsion = 20156.129871 eV Total energy + Delta-G solvation = -3691.329864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.76770 -40.48583 -38.96647 -37.40097 -35.02886 -32.84163 -31.94271 -30.90931 -30.61204 -29.62570 -27.03579 -24.77987 -23.36811 -22.81641 -22.33480 -20.30160 -19.41318 -18.65898 -17.63136 -17.04068 -16.45906 -16.05004 -15.61850 -15.49862 -15.30400 -14.92124 -14.56363 -14.40505 -14.12770 -13.68622 -13.19233 -13.01801 -12.72886 -12.54657 -12.44254 -12.11830 -11.96020 -11.73916 -11.54956 -11.37533 -11.26830 -11.05181 -10.93620 -10.80425 -10.36942 -10.24521 -9.70917 -9.16771 -9.12733 -8.99094 -8.53981 -8.30660 -7.92437 -6.17535 -4.25087 0.91831 1.07742 2.77072 3.20921 3.22395 3.29568 3.31029 3.38369 3.98990 4.16053 4.33023 4.52784 4.63309 4.68627 4.94884 5.00530 5.03833 5.14802 5.15827 5.32011 5.55574 5.60611 5.78779 5.85132 5.96653 6.05687 6.15733 6.33454 6.38095 6.46506 6.58298 6.96495 7.11812 7.20877 7.28781 7.35228 7.56473 7.66617 7.80427 8.04073 8.55795 8.73603 9.02295 9.41346 10.90176 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028988 B = 0.003431 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.688099 B = 8159.797814 C = 8545.378969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.271 3.729 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.879 5.879 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.702 5.702 14 C 0.506 3.494 15 O -0.521 6.521 16 C 0.061 3.939 17 H 0.094 0.906 18 C -0.173 4.173 19 O -0.274 6.274 20 C 0.106 3.894 21 C -0.189 4.189 22 C -0.089 4.089 23 C -0.137 4.137 24 C -0.117 4.117 25 C 0.067 3.933 26 F -0.130 7.130 27 H 0.024 0.976 28 H 0.052 0.948 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.085 0.915 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.144 5.989 18.046 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.169 3.831 4 H 0.074 0.926 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.516 5.516 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.352 5.352 14 C 0.288 3.712 15 O -0.397 6.397 16 C 0.001 3.999 17 H 0.111 0.889 18 C -0.231 4.231 19 O -0.185 6.185 20 C 0.059 3.941 21 C -0.208 4.208 22 C -0.107 4.107 23 C -0.155 4.155 24 C -0.136 4.136 25 C 0.047 3.953 26 F -0.108 7.108 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.158 0.842 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.786 5.926 16.877 19.928 hybrid contribution 1.355 -0.169 0.211 1.382 sum -7.431 5.757 17.088 19.503 Atomic orbital electron populations 1.21853 0.98049 0.98271 1.01510 1.21873 0.92912 0.99770 1.01473 1.18849 0.94645 0.89060 0.80506 0.92596 1.21178 0.90469 1.43820 1.02075 0.92015 1.24895 0.98517 0.95019 0.95141 1.69970 1.35248 1.42729 1.03664 0.86466 0.84893 0.78411 0.77527 1.20552 1.21092 1.19822 1.46397 1.13674 1.56212 1.18895 1.19734 0.83560 0.79887 0.88022 1.90734 1.50133 1.58272 1.40603 1.22478 0.80545 0.97682 0.99223 0.88868 1.22290 0.99800 0.97599 1.03370 1.86335 1.24716 1.81746 1.25752 1.19174 0.91385 0.97108 0.86465 1.21254 1.01906 1.06210 0.91444 1.21003 0.94539 0.97657 0.97481 1.20896 0.95117 1.01920 0.97557 1.21022 1.00799 1.01326 0.90440 1.17034 0.89316 1.06221 0.82680 1.91527 1.81471 1.91247 1.46597 0.95664 0.92932 0.94185 0.94748 0.89660 0.92505 0.77958 0.89811 0.90571 0.91309 0.84193 0.85092 0.84998 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.53 37.16 0.32 -2.80 16 2 C -0.12 -2.88 5.49 -26.73 -0.15 -3.02 16 3 C 0.27 6.64 2.11 -69.08 -0.15 6.49 16 4 H 0.06 1.62 7.56 -51.92 -0.39 1.23 16 5 C -0.54 -13.76 8.67 -34.44 -0.30 -14.06 16 6 H 0.06 1.50 7.73 -52.49 -0.41 1.09 16 7 C 0.07 1.80 5.21 -17.82 -0.09 1.71 16 8 N -0.88 -24.52 11.95 55.43 0.66 -23.86 16 9 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.70 -13.88 4.99 -54.93 -0.27 -14.15 16 14 C 0.51 9.99 5.79 -10.99 -0.06 9.92 16 15 O -0.52 -12.68 13.65 -14.31 -0.20 -12.88 16 16 C 0.06 0.90 2.65 -27.89 -0.07 0.83 16 17 H 0.09 1.11 5.98 -51.93 -0.31 0.80 16 18 C -0.17 -2.09 9.22 37.16 0.34 -1.75 16 19 O -0.27 -4.66 9.21 -39.47 -0.36 -5.02 16 20 C 0.11 1.48 6.56 -39.18 -0.26 1.22 16 21 C -0.19 -2.00 8.37 -39.45 -0.33 -2.33 16 22 C -0.09 -0.75 10.04 -39.60 -0.40 -1.14 16 23 C -0.14 -1.12 10.04 -39.57 -0.40 -1.52 16 24 C -0.12 -1.17 10.02 -39.54 -0.40 -1.57 16 25 C 0.07 0.92 7.31 -39.30 -0.29 0.63 16 26 F -0.13 -2.07 17.11 2.25 0.04 -2.03 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 1.27 7.90 -51.93 -0.41 0.86 16 29 H 0.04 0.88 5.63 -51.93 -0.29 0.59 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 2.23 6.59 -51.93 -0.34 1.89 16 32 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.39 6.39 8.31 -40.82 -0.34 6.05 16 34 H 0.08 0.89 7.92 -51.93 -0.41 0.47 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.68 7.37 -51.93 -0.38 0.30 16 37 H 0.14 1.24 5.69 -52.49 -0.30 0.94 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 335.37 15.07 5.05 5.05 Total: -1.00 -31.81 335.37 -7.58 -39.40 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.26 Total: 5.70 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -2.23 Total: -7.39 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.39 Total: -38.01 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.56 Total: -17.90 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.81 -7.58 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.787 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds