Wall clock time and date at job start Tue Mar 31 2020 08:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47096 * 2 1 4 4 H 1.09007 * 109.46924 * 305.86938 * 3 2 1 5 5 C 1.50706 * 109.47067 * 185.87560 * 3 2 1 6 6 H 1.07999 * 119.99438 * 244.81429 * 5 3 2 7 7 C 1.37872 * 120.00533 * 64.80611 * 5 3 2 8 8 N 1.31523 * 119.99537 * 5.97173 * 7 5 3 9 9 Si 1.86799 * 120.00413 * 185.97204 * 7 5 3 10 10 H 1.48502 * 109.46780 * 94.99411 * 9 7 5 11 11 H 1.48500 * 109.47050 * 214.99668 * 9 7 5 12 12 H 1.48496 * 109.46785 * 334.99692 * 9 7 5 13 13 N 1.46496 * 109.47606 * 65.86945 * 3 2 1 14 14 C 1.34771 * 120.00354 * 275.00304 * 13 3 2 15 15 O 1.21284 * 119.99908 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00407 * 179.97438 * 14 13 3 17 17 H 1.09005 * 109.47273 * 304.99910 * 16 14 13 18 18 C 1.52998 * 109.47161 * 64.99798 * 16 14 13 19 19 O 1.42899 * 109.47330 * 184.99811 * 16 14 13 20 20 C 1.35956 * 117.00188 * 156.19064 * 19 16 14 21 21 C 1.38668 * 120.06151 * 357.21286 * 20 19 16 22 22 C 1.38175 * 119.96899 * 179.72078 * 21 20 19 23 23 C 1.38261 * 120.09645 * 0.55524 * 22 21 20 24 24 C 1.38255 * 120.12603 * 359.72314 * 23 22 21 25 25 C 1.38339 * 120.02913 * 359.97438 * 24 23 22 26 26 F 1.35094 * 120.04834 * 180.02562 * 25 24 23 27 27 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46779 * 60.00646 * 1 2 3 29 29 H 1.08996 * 109.46976 * 299.99924 * 1 2 3 30 30 H 1.09006 * 109.47099 * 119.99893 * 2 1 3 31 31 H 1.08994 * 109.47112 * 239.99307 * 2 1 3 32 32 H 0.96996 * 119.99524 * 180.02562 * 8 7 5 33 33 H 0.97004 * 119.99753 * 94.99515 * 13 3 2 34 34 H 1.09004 * 109.47345 * 300.00394 * 18 16 14 35 35 H 1.09005 * 109.46935 * 59.99906 * 18 16 14 36 36 H 1.08994 * 109.47464 * 180.02562 * 18 16 14 37 37 H 1.07999 * 120.01292 * 359.97438 * 21 20 19 38 38 H 1.08002 * 119.95327 * 180.28154 * 22 21 20 39 39 H 1.08005 * 119.94191 * 179.74577 * 23 22 21 40 40 H 1.08001 * 119.99134 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5934 1.9857 -0.8328 5 6 3.5401 1.4450 -0.1455 6 1 4.1598 1.8148 0.6580 7 6 4.1212 0.9750 -1.3040 8 7 3.3673 0.6346 -2.3266 9 14 5.9792 0.8217 -1.4215 10 1 6.3842 -0.5646 -1.0761 11 1 6.4151 1.1344 -2.8062 12 1 6.6151 1.7734 -0.4755 13 7 1.6705 2.0912 1.2604 14 6 0.4550 2.6574 1.3959 15 8 -0.3327 2.6304 0.4742 16 6 0.0747 3.3242 2.6927 17 1 0.2027 2.6199 3.5147 18 6 0.9707 4.5432 2.9214 19 8 -1.2906 3.7415 2.6313 20 6 -1.9429 3.8954 3.8142 21 6 -1.3007 3.5945 5.0058 22 6 -1.9635 3.7571 6.2073 23 6 -3.2702 4.2086 6.2227 24 6 -3.9162 4.5043 5.0367 25 6 -3.2555 4.3494 3.8311 26 9 -3.8862 4.6387 2.6720 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.7761 0.3037 -3.1415 33 1 2.3006 2.1130 1.9976 34 1 2.0122 4.2249 2.9683 35 1 0.8427 5.2475 2.0994 36 1 0.6959 5.0252 3.8596 37 1 -0.2816 3.2371 4.9950 38 1 -1.4615 3.5269 7.1354 39 1 -3.7872 4.3308 7.1630 40 1 -4.9371 4.8564 5.0512 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358054742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:43 Heat of formation + Delta-G solvation = -118.242097 kcal Electronic energy + Delta-G solvation = -23848.329550 eV Core-core repulsion = 20156.129871 eV Total energy + Delta-G solvation = -3692.199679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.82699 -41.63305 -40.34595 -38.42680 -36.87647 -34.50839 -33.58467 -32.21596 -31.61226 -30.52364 -28.94263 -25.98762 -24.97534 -23.91514 -23.34958 -21.92796 -21.13506 -19.65046 -19.14892 -18.06515 -17.76263 -17.28088 -17.11070 -17.00928 -16.47881 -16.25689 -15.74928 -15.62262 -15.37649 -15.22408 -14.61307 -14.25566 -13.96650 -13.92274 -13.62941 -13.34421 -13.27318 -13.23365 -12.93146 -12.88721 -12.64978 -12.60754 -12.24868 -12.18132 -12.11037 -11.86966 -11.63320 -11.09259 -10.65647 -10.53404 -9.91795 -9.72066 -9.21756 -8.18362 -6.33520 0.14606 0.27676 1.45808 1.46120 1.56657 1.65027 1.68109 2.40313 2.62047 2.73218 3.13651 3.27534 3.58932 3.74225 3.84453 3.89303 3.99239 4.27836 4.35505 4.42939 4.47161 4.49916 4.62683 4.69018 4.69996 5.00522 5.01854 5.09488 5.12449 5.20395 5.28436 5.38166 5.44484 5.48463 5.59231 5.69647 5.73680 5.88611 6.06345 6.26725 6.75028 6.90068 7.32292 7.50432 8.90008 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028988 B = 0.003431 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.688099 B = 8159.797814 C = 8545.378969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C 0.277 3.723 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.078 0.922 7 C 0.014 3.986 8 N -0.919 5.919 9 Si 0.970 3.030 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.259 1.259 13 N -0.693 5.693 14 C 0.499 3.501 15 O -0.577 6.577 16 C 0.071 3.929 17 H 0.130 0.870 18 C -0.166 4.166 19 O -0.315 6.315 20 C 0.073 3.927 21 C -0.189 4.189 22 C -0.078 4.078 23 C -0.124 4.124 24 C -0.115 4.115 25 C 0.024 3.976 26 F -0.157 7.157 27 H 0.049 0.951 28 H 0.021 0.979 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.264 0.736 33 H 0.408 0.592 34 H 0.103 0.897 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.160 0.840 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 5.971 22.550 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.174 3.826 4 H 0.017 0.983 5 C -0.584 4.584 6 H 0.097 0.903 7 C -0.186 4.186 8 N -0.557 5.557 9 Si 0.795 3.205 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.183 1.183 13 N -0.344 5.344 14 C 0.284 3.716 15 O -0.456 6.456 16 C 0.012 3.988 17 H 0.147 0.853 18 C -0.224 4.224 19 O -0.229 6.229 20 C 0.027 3.973 21 C -0.207 4.207 22 C -0.096 4.096 23 C -0.142 4.142 24 C -0.134 4.134 25 C 0.004 3.996 26 F -0.136 7.136 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.244 0.756 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.177 0.823 38 H 0.188 0.812 39 H 0.188 0.812 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.554 5.922 21.448 23.498 hybrid contribution 0.868 -0.128 -1.088 1.398 sum -6.686 5.794 20.360 22.199 Atomic orbital electron populations 1.21695 0.97229 0.99298 1.00117 1.21722 0.93520 0.99107 1.00899 1.18419 0.94160 0.89073 0.80923 0.98325 1.21558 0.91034 1.43280 1.02504 0.90347 1.25814 1.03287 0.94692 0.94791 1.70136 1.37346 1.43905 1.04295 0.85356 0.79055 0.78792 0.77278 1.19822 1.21713 1.18281 1.46076 1.14473 1.55847 1.17957 1.20675 0.82561 0.78905 0.89424 1.90710 1.51674 1.60132 1.43124 1.22405 0.80728 0.99147 0.96512 0.85267 1.22297 1.00225 0.96001 1.03832 1.86261 1.25587 1.82734 1.28290 1.19511 0.91737 0.99400 0.86639 1.21538 1.02737 1.05608 0.90847 1.21516 0.94510 0.95518 0.98022 1.21415 0.95152 0.99545 0.98100 1.21357 1.01662 1.00600 0.89762 1.17669 0.90090 1.08720 0.83075 1.91444 1.82003 1.91831 1.48353 0.93217 0.96007 0.93921 0.92805 0.92463 0.92686 0.75614 0.87879 0.93008 0.88387 0.82302 0.81193 0.81187 0.82353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.53 71.98 0.61 -5.20 16 2 C -0.11 -5.50 5.49 30.59 0.17 -5.33 16 3 C 0.28 14.03 2.11 44.25 0.09 14.12 16 4 H 0.00 -0.07 7.56 -2.38 -0.02 -0.09 16 5 C -0.55 -28.01 8.67 25.60 0.22 -27.78 16 6 H 0.08 3.67 7.73 -2.91 -0.02 3.65 16 7 C 0.01 0.76 5.21 84.65 0.44 1.21 16 8 N -0.92 -53.02 11.95 21.45 0.26 -52.77 16 9 Si 0.97 41.28 29.54 68.60 2.03 43.30 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 13 N -0.69 -27.40 4.99 -446.10 -2.23 -29.63 16 14 C 0.50 20.16 5.79 87.66 0.51 20.67 16 15 O -0.58 -29.81 13.65 15.95 0.22 -29.60 16 16 C 0.07 2.06 2.65 29.85 0.08 2.14 16 17 H 0.13 2.72 5.98 -2.38 -0.01 2.71 16 18 C -0.17 -3.74 9.22 71.98 0.66 -3.08 16 19 O -0.32 -11.00 9.21 -74.07 -0.68 -11.69 16 20 C 0.07 2.01 6.56 22.53 0.15 2.15 16 21 C -0.19 -3.39 8.37 22.36 0.19 -3.20 16 22 C -0.08 -0.93 10.04 22.26 0.22 -0.71 16 23 C -0.12 -1.49 10.04 22.28 0.22 -1.26 16 24 C -0.12 -2.08 10.02 22.30 0.22 -1.86 16 25 C 0.02 0.66 7.31 22.45 0.16 0.83 16 26 F -0.16 -5.38 17.11 44.97 0.77 -4.61 16 27 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.02 1.09 7.90 -2.39 -0.02 1.07 16 29 H 0.04 1.92 5.63 -2.39 -0.01 1.90 16 30 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.06 3.10 6.59 -2.39 -0.02 3.08 16 32 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.41 12.72 8.31 -92.71 -0.77 11.94 16 34 H 0.10 1.89 7.92 -2.39 -0.02 1.87 16 35 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.10 1.64 7.37 -2.39 -0.02 1.63 16 37 H 0.16 2.10 5.69 -2.91 -0.02 2.09 16 38 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16 40 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -76.03 335.37 4.62 -71.41 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.30 Total: 20.87 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 3.96 Total: -7.30 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -1.97 Total: -82.40 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.46 Total: -41.28 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.77 Total: -4.61 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -76.03 4.62 -71.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.828 kcal (2) G-P(sol) polarization free energy of solvation -76.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds