Wall clock time and date at job start Tue Mar 31 2020 08:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46984 * 2 1 4 4 H 1.08999 * 109.46899 * 54.99834 * 3 2 1 5 5 C 1.50697 * 109.46644 * 174.99914 * 3 2 1 6 6 H 1.07998 * 120.00029 * 120.00028 * 5 3 2 7 7 C 1.37881 * 120.00073 * 299.99633 * 5 3 2 8 8 N 1.31514 * 119.99920 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99863 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47214 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47252 * 120.00270 * 9 7 5 12 12 H 1.48502 * 109.46976 * 240.00406 * 9 7 5 13 13 N 1.46500 * 109.47239 * 294.99906 * 3 2 1 14 14 C 1.34773 * 119.99911 * 84.99787 * 13 3 2 15 15 O 1.21280 * 120.00065 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99669 * 179.97438 * 14 13 3 17 17 H 1.08998 * 109.47627 * 305.00432 * 16 14 13 18 18 C 1.53004 * 109.46657 * 65.00926 * 16 14 13 19 19 O 1.42899 * 109.47025 * 185.00330 * 16 14 13 20 20 C 1.35950 * 117.00358 * 155.01580 * 19 16 14 21 21 C 1.38666 * 120.05798 * 5.49041 * 20 19 16 22 22 C 1.38186 * 119.96791 * 179.97438 * 21 20 19 23 23 C 1.38264 * 120.09635 * 359.97438 * 22 21 20 24 24 C 1.38256 * 120.12156 * 0.02562 * 23 22 21 25 25 C 1.38326 * 120.03498 * 0.25784 * 24 23 22 26 26 F 1.35105 * 120.04967 * 179.72392 * 25 24 23 27 27 H 1.08996 * 109.47249 * 299.99709 * 1 2 3 28 28 H 1.09000 * 109.47128 * 60.00208 * 1 2 3 29 29 H 1.09000 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46851 * 239.99665 * 2 1 3 31 31 H 1.08997 * 109.47026 * 120.00298 * 2 1 3 32 32 H 0.97001 * 119.99765 * 179.97438 * 8 7 5 33 33 H 0.96999 * 119.99686 * 265.00812 * 13 3 2 34 34 H 1.09001 * 109.46579 * 179.97438 * 18 16 14 35 35 H 1.08995 * 109.46995 * 299.99531 * 18 16 14 36 36 H 1.08998 * 109.47505 * 59.99431 * 18 16 14 37 37 H 1.07995 * 120.01882 * 359.95446 * 21 20 19 38 38 H 1.07995 * 119.95179 * 179.97438 * 22 21 20 39 39 H 1.07993 * 119.93952 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.98301 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2281 8 7 3.4061 0.3366 2.1730 9 14 6.0049 0.8811 1.3819 10 1 6.5987 1.5471 0.1948 11 1 6.3990 1.6166 2.6102 12 1 6.4970 -0.5176 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3393 2.6326 -0.4341 16 6 0.0367 3.3386 -2.6545 17 1 0.7776 4.0952 -2.9129 18 6 -0.0402 2.2973 -3.7729 19 8 -1.2405 3.9585 -2.4922 20 6 -1.5245 5.0096 -3.3063 21 6 -0.6430 5.3636 -4.3165 22 6 -0.9338 6.4320 -5.1433 23 6 -2.1028 7.1485 -4.9651 24 6 -2.9844 6.7988 -3.9591 25 6 -2.6958 5.7340 -3.1248 26 9 -3.5544 5.3955 -2.1381 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.8292 -0.0618 2.9496 33 1 2.2719 2.1231 -1.9978 34 1 -0.3288 2.7849 -4.7040 35 1 0.9340 1.8244 -3.8967 36 1 -0.7811 1.5406 -3.5145 37 1 0.2704 4.8048 -4.4569 38 1 -0.2469 6.7077 -5.9297 39 1 -2.3277 7.9827 -5.6130 40 1 -3.8967 7.3603 -3.8217 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358054743.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:46 Heat of formation + Delta-G solvation = -97.613532 kcal Electronic energy + Delta-G solvation = -23853.540944 eV Core-core repulsion = 20162.235786 eV Total energy + Delta-G solvation = -3691.305158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.75781 -40.48404 -38.96719 -37.39444 -35.03615 -32.85169 -31.90947 -30.89744 -30.60225 -29.64616 -27.00291 -24.73963 -23.37998 -22.81345 -22.35853 -20.26401 -19.38784 -18.63389 -17.62601 -17.05258 -16.44988 -16.00847 -15.70905 -15.46205 -15.18310 -15.03328 -14.57142 -14.41670 -14.17089 -13.59781 -13.11225 -13.00702 -12.72241 -12.64877 -12.44782 -12.09900 -11.99896 -11.72136 -11.54261 -11.28706 -11.22569 -11.00916 -10.96875 -10.86356 -10.33467 -10.22101 -9.65422 -9.17909 -9.09071 -8.98814 -8.54324 -8.30224 -7.90742 -6.16067 -4.26026 0.92430 1.07809 2.77698 3.20750 3.22510 3.29351 3.31413 3.39512 3.99124 4.15855 4.32738 4.54117 4.62768 4.71156 4.94847 5.00815 5.02677 5.14389 5.16874 5.30599 5.52960 5.59048 5.78563 5.85650 5.97210 6.01815 6.16148 6.37725 6.44205 6.47073 6.64021 7.01005 7.13700 7.22651 7.32369 7.37998 7.58126 7.68280 7.85478 8.13807 8.55993 8.72496 9.02634 9.41220 10.89257 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024806 B = 0.003507 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.505190 B = 7981.204689 C = 8456.493081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.702 5.702 14 C 0.505 3.495 15 O -0.522 6.522 16 C 0.061 3.939 17 H 0.094 0.906 18 C -0.174 4.174 19 O -0.274 6.274 20 C 0.105 3.895 21 C -0.188 4.188 22 C -0.089 4.089 23 C -0.136 4.136 24 C -0.118 4.118 25 C 0.068 3.932 26 F -0.130 7.130 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.024 0.976 30 H 0.032 0.968 31 H 0.100 0.900 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.003 9.701 -16.403 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.352 5.352 14 C 0.288 3.712 15 O -0.398 6.398 16 C 0.001 3.999 17 H 0.112 0.888 18 C -0.231 4.231 19 O -0.186 6.186 20 C 0.058 3.942 21 C -0.207 4.207 22 C -0.108 4.108 23 C -0.154 4.154 24 C -0.136 4.136 25 C 0.048 3.952 26 F -0.108 7.108 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.158 0.842 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.689 9.449 -15.302 19.559 hybrid contribution 1.330 -0.084 -0.214 1.350 sum -6.359 9.365 -15.516 19.206 Atomic orbital electron populations 1.21853 0.98287 0.98163 1.01307 1.21942 0.92626 0.99669 1.02376 1.18845 0.94311 0.89207 0.80594 0.93183 1.21240 0.90531 1.39193 1.06396 0.91981 1.24892 0.98666 0.94763 0.95352 1.69904 1.35090 1.37448 1.09333 0.86391 0.84755 0.77791 0.78140 1.19746 1.20864 1.20850 1.46409 1.13828 1.56126 1.18829 1.19746 0.83429 0.80227 0.87832 1.90731 1.51017 1.58399 1.39648 1.22471 0.84726 0.95978 0.96682 0.88818 1.22315 1.04368 0.99308 0.97152 1.86321 1.34754 1.41938 1.55579 1.19179 0.94113 0.89085 0.91854 1.21284 1.00862 1.01295 0.97271 1.21011 0.96932 0.94281 0.98542 1.20897 0.94602 1.01132 0.98788 1.21021 1.01249 0.96033 0.95337 1.17049 0.88996 0.97783 0.91340 1.91532 1.68225 1.91804 1.59257 0.93101 0.94322 0.95737 0.94947 0.88184 0.92542 0.77941 0.91195 0.89888 0.90627 0.84176 0.85088 0.84995 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.52 37.16 0.32 -2.80 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.69 2.24 -69.08 -0.15 6.53 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.75 8.73 -34.44 -0.30 -14.05 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.36 11.29 55.43 0.63 -23.73 16 9 Si 0.90 20.22 29.54 -169.99 -5.02 15.19 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 13 N -0.70 -13.94 4.98 -54.93 -0.27 -14.21 16 14 C 0.51 10.01 5.75 -10.99 -0.06 9.95 16 15 O -0.52 -12.72 13.65 -14.30 -0.20 -12.91 16 16 C 0.06 0.91 2.64 -27.88 -0.07 0.84 16 17 H 0.09 1.15 6.31 -51.93 -0.33 0.82 16 18 C -0.17 -2.04 9.13 37.16 0.34 -1.70 16 19 O -0.27 -4.68 9.20 -39.44 -0.36 -5.04 16 20 C 0.10 1.48 6.61 -39.18 -0.26 1.22 16 21 C -0.19 -2.00 8.24 -39.44 -0.33 -2.33 16 22 C -0.09 -0.76 10.04 -39.59 -0.40 -1.16 16 23 C -0.14 -1.12 10.04 -39.57 -0.40 -1.52 16 24 C -0.12 -1.19 10.02 -39.54 -0.40 -1.59 16 25 C 0.07 0.94 7.31 -39.30 -0.29 0.65 16 26 F -0.13 -2.09 17.11 2.25 0.04 -2.05 16 27 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 28 H 0.04 0.84 5.65 -51.93 -0.29 0.55 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 33 H 0.39 6.44 8.32 -40.82 -0.34 6.10 16 34 H 0.07 0.67 6.91 -51.93 -0.36 0.31 16 35 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.14 1.24 5.43 -52.49 -0.28 0.95 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -31.74 333.66 -7.60 -39.34 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.20 Total: 5.88 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -2.24 Total: -7.49 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.35 Total: -37.95 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.56 Total: -17.95 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.74 -7.60 -39.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054743.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.274 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds