Wall clock time and date at job start Tue Mar 31 2020 08:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46984 * 2 1 4 4 H 1.08999 * 109.46899 * 54.99834 * 3 2 1 5 5 C 1.50697 * 109.46644 * 174.99914 * 3 2 1 6 6 H 1.07998 * 120.00029 * 120.00028 * 5 3 2 7 7 C 1.37881 * 120.00073 * 299.99633 * 5 3 2 8 8 N 1.31514 * 119.99920 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99863 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47214 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47252 * 120.00270 * 9 7 5 12 12 H 1.48502 * 109.46976 * 240.00406 * 9 7 5 13 13 N 1.46500 * 109.47239 * 294.99906 * 3 2 1 14 14 C 1.34773 * 119.99911 * 84.99787 * 13 3 2 15 15 O 1.21280 * 120.00065 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99669 * 179.97438 * 14 13 3 17 17 H 1.08998 * 109.47627 * 305.00432 * 16 14 13 18 18 C 1.53004 * 109.46657 * 65.00926 * 16 14 13 19 19 O 1.42899 * 109.47025 * 185.00330 * 16 14 13 20 20 C 1.35950 * 117.00358 * 155.01580 * 19 16 14 21 21 C 1.38666 * 120.05798 * 5.49041 * 20 19 16 22 22 C 1.38186 * 119.96791 * 179.97438 * 21 20 19 23 23 C 1.38264 * 120.09635 * 359.97438 * 22 21 20 24 24 C 1.38256 * 120.12156 * 0.02562 * 23 22 21 25 25 C 1.38326 * 120.03498 * 0.25784 * 24 23 22 26 26 F 1.35105 * 120.04967 * 179.72392 * 25 24 23 27 27 H 1.08996 * 109.47249 * 299.99709 * 1 2 3 28 28 H 1.09000 * 109.47128 * 60.00208 * 1 2 3 29 29 H 1.09000 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46851 * 239.99665 * 2 1 3 31 31 H 1.08997 * 109.47026 * 120.00298 * 2 1 3 32 32 H 0.97001 * 119.99765 * 179.97438 * 8 7 5 33 33 H 0.96999 * 119.99686 * 265.00812 * 13 3 2 34 34 H 1.09001 * 109.46579 * 179.97438 * 18 16 14 35 35 H 1.08995 * 109.46995 * 299.99531 * 18 16 14 36 36 H 1.08998 * 109.47505 * 59.99431 * 18 16 14 37 37 H 1.07995 * 120.01882 * 359.95446 * 21 20 19 38 38 H 1.07995 * 119.95179 * 179.97438 * 22 21 20 39 39 H 1.07993 * 119.93952 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.98301 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2281 8 7 3.4061 0.3366 2.1730 9 14 6.0049 0.8811 1.3819 10 1 6.5987 1.5471 0.1948 11 1 6.3990 1.6166 2.6102 12 1 6.4970 -0.5176 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3393 2.6326 -0.4341 16 6 0.0367 3.3386 -2.6545 17 1 0.7776 4.0952 -2.9129 18 6 -0.0402 2.2973 -3.7729 19 8 -1.2405 3.9585 -2.4922 20 6 -1.5245 5.0096 -3.3063 21 6 -0.6430 5.3636 -4.3165 22 6 -0.9338 6.4320 -5.1433 23 6 -2.1028 7.1485 -4.9651 24 6 -2.9844 6.7988 -3.9591 25 6 -2.6958 5.7340 -3.1248 26 9 -3.5544 5.3955 -2.1381 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.8292 -0.0618 2.9496 33 1 2.2719 2.1231 -1.9978 34 1 -0.3288 2.7849 -4.7040 35 1 0.9340 1.8244 -3.8967 36 1 -0.7811 1.5406 -3.5145 37 1 0.2704 4.8048 -4.4569 38 1 -0.2469 6.7077 -5.9297 39 1 -2.3277 7.9827 -5.6130 40 1 -3.8967 7.3603 -3.8217 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358054743.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:45 Heat of formation + Delta-G solvation = -117.556506 kcal Electronic energy + Delta-G solvation = -23854.405736 eV Core-core repulsion = 20162.235786 eV Total energy + Delta-G solvation = -3692.169950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.83025 -41.63572 -40.35168 -38.42622 -36.89160 -34.52497 -33.50048 -32.25623 -31.61147 -30.54009 -28.91168 -25.93557 -24.98804 -23.93022 -23.35724 -21.90246 -21.12665 -19.63377 -19.13927 -18.09056 -17.77868 -17.22283 -17.09292 -17.05768 -16.49432 -16.25626 -15.86606 -15.59545 -15.38834 -15.07393 -14.60763 -14.22872 -14.11975 -13.89662 -13.56507 -13.35908 -13.24735 -13.19715 -12.91070 -12.87728 -12.71314 -12.59707 -12.16433 -12.13450 -12.06874 -11.94872 -11.60579 -11.06122 -10.68392 -10.52381 -9.91875 -9.71157 -9.22759 -8.16323 -6.34191 0.14108 0.26660 1.45206 1.46108 1.57601 1.65834 1.68456 2.39870 2.62501 2.72248 3.13594 3.27228 3.59517 3.75990 3.83551 3.90783 3.99229 4.26973 4.35084 4.45480 4.47087 4.53702 4.64059 4.69628 4.73571 4.99764 5.03177 5.10728 5.12046 5.22970 5.27979 5.40762 5.43933 5.51892 5.59175 5.69882 5.77230 5.89532 6.14724 6.26578 6.73522 6.90133 7.31976 7.50390 8.89409 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024806 B = 0.003507 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.505190 B = 7981.204689 C = 8456.493081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 C 0.279 3.721 4 H -0.006 1.006 5 C -0.545 4.545 6 H 0.077 0.923 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.257 1.257 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.693 5.693 14 C 0.498 3.502 15 O -0.577 6.577 16 C 0.071 3.929 17 H 0.125 0.875 18 C -0.166 4.166 19 O -0.315 6.315 20 C 0.072 3.928 21 C -0.188 4.188 22 C -0.079 4.079 23 C -0.124 4.124 24 C -0.116 4.116 25 C 0.024 3.976 26 F -0.157 7.157 27 H 0.020 0.980 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.264 0.736 33 H 0.408 0.592 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.160 0.840 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.279 11.188 -20.321 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.158 4.158 3 C 0.175 3.825 4 H 0.012 0.988 5 C -0.584 4.584 6 H 0.095 0.905 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.797 3.203 10 H -0.180 1.180 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.344 5.344 14 C 0.284 3.716 15 O -0.457 6.457 16 C 0.012 3.988 17 H 0.143 0.857 18 C -0.224 4.224 19 O -0.229 6.229 20 C 0.026 3.974 21 C -0.206 4.206 22 C -0.097 4.097 23 C -0.142 4.142 24 C -0.134 4.134 25 C 0.004 3.996 26 F -0.136 7.136 27 H 0.039 0.961 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.244 0.756 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.178 0.822 38 H 0.188 0.812 39 H 0.188 0.812 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.953 10.955 -19.284 22.964 hybrid contribution 0.727 -0.425 0.948 1.268 sum -5.225 10.530 -18.336 21.780 Atomic orbital electron populations 1.21695 0.97412 0.99122 1.00016 1.21784 0.93278 0.99127 1.01654 1.18416 0.93913 0.89138 0.80991 0.98776 1.21594 0.91033 1.38906 1.06830 0.90464 1.25807 1.03426 0.94380 0.95017 1.70069 1.37103 1.38369 1.09935 0.85291 0.78955 0.77790 0.78250 1.18033 1.21332 1.20523 1.46088 1.14582 1.55786 1.17919 1.20699 0.82427 0.79311 0.89172 1.90707 1.52503 1.60308 1.42165 1.22411 0.85227 0.97148 0.93991 0.85727 1.22327 1.05038 0.98130 0.96864 1.86246 1.35533 1.43541 1.57556 1.19521 0.95427 0.89224 0.93244 1.21574 1.00688 1.02037 0.96315 1.21528 0.97275 0.92635 0.98230 1.21417 0.93614 1.01383 0.97745 1.21356 1.02435 0.94749 0.94904 1.17691 0.89537 0.99931 0.92393 1.91448 1.69159 1.92323 1.60705 0.96087 0.93934 0.93455 0.93365 0.90948 0.92638 0.75630 0.88271 0.87792 0.92615 0.82240 0.81173 0.81175 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.83 8.52 71.98 0.61 -5.21 16 2 C -0.12 -5.87 5.45 30.60 0.17 -5.70 16 3 C 0.28 14.15 2.24 44.24 0.10 14.25 16 4 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 5 C -0.55 -28.09 8.73 25.60 0.22 -27.86 16 6 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 7 C 0.01 0.73 5.29 84.66 0.45 1.18 16 8 N -0.92 -52.30 11.29 21.45 0.24 -52.05 16 9 Si 0.97 41.25 29.54 68.60 2.03 43.28 16 10 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 13 N -0.69 -27.58 4.98 -446.10 -2.22 -29.80 16 14 C 0.50 20.21 5.75 87.66 0.50 20.71 16 15 O -0.58 -29.88 13.65 15.96 0.22 -29.66 16 16 C 0.07 2.07 2.64 29.85 0.08 2.15 16 17 H 0.13 2.76 6.31 -2.39 -0.02 2.74 16 18 C -0.17 -3.54 9.13 71.98 0.66 -2.89 16 19 O -0.32 -11.04 9.20 -73.99 -0.68 -11.72 16 20 C 0.07 1.99 6.61 22.53 0.15 2.14 16 21 C -0.19 -3.41 8.24 22.36 0.18 -3.23 16 22 C -0.08 -0.96 10.04 22.26 0.22 -0.74 16 23 C -0.12 -1.52 10.04 22.28 0.22 -1.30 16 24 C -0.12 -2.14 10.02 22.30 0.22 -1.91 16 25 C 0.02 0.67 7.31 22.45 0.16 0.84 16 26 F -0.16 -5.45 17.11 44.97 0.77 -4.68 16 27 H 0.02 1.06 7.85 -2.39 -0.02 1.04 16 28 H 0.04 1.92 5.65 -2.39 -0.01 1.90 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 4.00 5.95 -2.39 -0.01 3.98 16 32 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.41 12.86 8.32 -92.71 -0.77 12.09 16 34 H 0.10 1.55 6.91 -2.39 -0.02 1.53 16 35 H 0.10 1.75 7.92 -2.39 -0.02 1.73 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.16 2.14 5.43 -2.91 -0.02 2.12 16 38 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 39 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 40 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -75.65 333.66 4.61 -71.05 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.30 Total: 21.16 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 3.96 Total: -7.57 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -1.98 Total: -81.85 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.46 Total: -41.38 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.77 Total: -4.68 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -75.65 4.61 -71.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054743.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.510 kcal (2) G-P(sol) polarization free energy of solvation -75.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds