Wall clock time and date at job start Tue Mar 31 2020 08:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47333 * 2 1 4 4 H 1.09000 * 109.47177 * 54.99963 * 3 2 1 5 5 C 1.50705 * 109.46872 * 175.00012 * 3 2 1 6 6 H 1.07998 * 119.99759 * 119.99981 * 5 3 2 7 7 C 1.37875 * 119.99922 * 299.99550 * 5 3 2 8 8 N 1.31513 * 119.99902 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 120.00202 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47007 * 89.99515 * 9 7 5 11 11 H 1.48500 * 109.46878 * 209.99956 * 9 7 5 12 12 H 1.48502 * 109.46773 * 329.99615 * 9 7 5 13 13 N 1.46503 * 109.46842 * 294.99747 * 3 2 1 14 14 C 1.34776 * 119.99326 * 85.00283 * 13 3 2 15 15 O 1.21269 * 120.00609 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99246 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47285 * 55.00423 * 16 14 13 18 18 C 1.52993 * 109.47570 * 294.99853 * 16 14 13 19 19 O 1.42905 * 109.47064 * 175.00023 * 16 14 13 20 20 C 1.35955 * 117.00214 * 205.00981 * 19 16 14 21 21 C 1.38661 * 120.06270 * 354.51144 * 20 19 16 22 22 C 1.38181 * 119.97067 * 179.71901 * 21 20 19 23 23 C 1.38262 * 120.09480 * 0.55510 * 22 21 20 24 24 C 1.38255 * 120.12301 * 359.71933 * 23 22 21 25 25 C 1.38339 * 120.03355 * 0.02562 * 24 23 22 26 26 F 1.35093 * 120.04790 * 180.02562 * 25 24 23 27 27 H 1.09000 * 109.47400 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46969 * 300.00632 * 1 2 3 29 29 H 1.08996 * 109.46924 * 59.99742 * 1 2 3 30 30 H 1.08995 * 109.47039 * 239.99399 * 2 1 3 31 31 H 1.09009 * 109.46801 * 119.99954 * 2 1 3 32 32 H 0.97004 * 120.00201 * 179.97438 * 8 7 5 33 33 H 0.96996 * 119.99672 * 265.00006 * 13 3 2 34 34 H 1.09008 * 109.47099 * 60.00219 * 18 16 14 35 35 H 1.09004 * 109.47281 * 179.97438 * 18 16 14 36 36 H 1.09000 * 109.47500 * 300.00066 * 18 16 14 37 37 H 1.08004 * 120.01442 * 359.97438 * 21 20 19 38 38 H 1.07999 * 119.95642 * 180.27083 * 22 21 20 39 39 H 1.07999 * 119.94197 * 179.74244 * 23 22 21 40 40 H 1.07998 * 119.98688 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8793 1.3358 9 14 3.0963 0.1089 2.5702 10 1 2.8754 -1.3272 2.2635 11 1 3.7937 0.2349 3.8752 12 1 1.7877 0.8075 2.6387 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6644 -1.3669 15 8 -0.3394 2.6320 -0.4345 16 6 0.0368 3.3386 -2.6545 17 1 0.1532 2.6389 -3.4822 18 6 0.9294 4.5588 -2.8888 19 8 -1.3276 3.7554 -2.5716 20 6 -2.0037 3.8917 -3.7432 21 6 -1.3386 3.7410 -4.9505 22 6 -2.0288 3.8743 -6.1402 23 6 -3.3796 4.1690 -6.1287 24 6 -4.0454 4.3257 -4.9272 25 6 -3.3606 4.1882 -3.7331 26 9 -4.0111 4.3408 -2.5589 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 5.8771 0.4815 2.1128 33 1 2.2720 2.1230 -1.9978 34 1 1.9702 4.2409 -2.9521 35 1 0.6415 5.0462 -3.8203 36 1 0.8130 5.2585 -2.0612 37 1 -0.2824 3.5156 -4.9611 38 1 -1.5115 3.7525 -7.0804 39 1 -3.9157 4.2767 -7.0600 40 1 -5.1005 4.5563 -4.9209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358054744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:48 Heat of formation + Delta-G solvation = -89.386642 kcal Electronic energy + Delta-G solvation = -23955.718385 eV Core-core repulsion = 20264.769972 eV Total energy + Delta-G solvation = -3690.948413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.81783 -40.57404 -39.14131 -37.50197 -35.31182 -32.93916 -32.13730 -31.10026 -30.81688 -29.69807 -27.55477 -24.82266 -23.30872 -22.73791 -22.40389 -20.68226 -19.65809 -18.69956 -17.72730 -17.14109 -16.62120 -16.09858 -15.94570 -15.65065 -15.39918 -14.98353 -14.65441 -14.57073 -14.27451 -13.73481 -13.31271 -13.11281 -12.96218 -12.68760 -12.48878 -12.30177 -12.12699 -11.96720 -11.81416 -11.74274 -11.28236 -11.20031 -11.03572 -10.91445 -10.65638 -9.96489 -9.59286 -9.29566 -9.23484 -9.10200 -8.79931 -8.36798 -8.16125 -6.25301 -4.28387 0.87493 1.02587 2.67777 3.04642 3.21408 3.33811 3.34215 3.39090 3.87415 4.09554 4.28406 4.48960 4.55910 4.65170 4.87614 4.96133 4.97334 5.03866 5.08606 5.22940 5.50720 5.53412 5.73433 5.80725 5.92379 5.92926 5.99358 6.01201 6.11709 6.14383 6.41347 6.61204 6.66657 6.79111 6.91696 7.09939 7.22481 7.23708 7.44694 8.06825 8.42601 8.69492 8.81960 9.35126 10.86522 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.029376 B = 0.003652 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.932603 B = 7664.312516 C = 8097.167088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.244 3.756 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.695 5.695 14 C 0.507 3.493 15 O -0.523 6.523 16 C 0.063 3.937 17 H 0.095 0.905 18 C -0.175 4.175 19 O -0.275 6.275 20 C 0.104 3.896 21 C -0.188 4.188 22 C -0.089 4.089 23 C -0.135 4.135 24 C -0.117 4.117 25 C 0.068 3.932 26 F -0.130 7.130 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.268 0.732 33 H 0.395 0.605 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.141 0.859 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.481 5.633 -16.431 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.141 3.859 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.711 3.289 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.345 5.345 14 C 0.290 3.710 15 O -0.399 6.399 16 C 0.003 3.997 17 H 0.113 0.887 18 C -0.233 4.233 19 O -0.187 6.187 20 C 0.057 3.943 21 C -0.207 4.207 22 C -0.107 4.107 23 C -0.153 4.153 24 C -0.136 4.136 25 C 0.048 3.952 26 F -0.108 7.108 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.229 0.771 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.950 5.590 -15.354 21.485 hybrid contribution -0.006 -0.538 0.407 0.675 sum -13.956 5.052 -14.946 21.064 Atomic orbital electron populations 1.21885 0.96893 0.99171 1.02287 1.22301 0.94356 0.99874 1.01241 1.19199 0.95738 0.88487 0.82447 0.93144 1.21012 0.88411 1.40044 1.07955 0.90113 1.24818 0.94869 0.95076 0.97643 1.69860 1.08676 1.44375 1.29832 0.86919 0.81018 0.79999 0.80936 1.20176 1.22087 1.18409 1.46059 1.14142 1.55934 1.18326 1.19800 0.83235 0.79686 0.88272 1.90725 1.51075 1.58437 1.39681 1.22417 0.80716 0.97707 0.98838 0.88696 1.22331 0.99911 0.97495 1.03546 1.86315 1.24269 1.81724 1.26366 1.19161 0.90707 0.97931 0.86497 1.21287 1.01254 1.06859 0.91277 1.21020 0.94294 0.97725 0.97686 1.20909 0.94659 1.02372 0.97396 1.21029 1.00796 1.01315 0.90490 1.17043 0.87776 1.08010 0.82328 1.91528 1.80677 1.93371 1.45266 0.94825 0.92771 0.93108 0.92206 0.92622 0.92214 0.77145 0.89633 0.91091 0.90491 0.84132 0.85030 0.84956 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.52 37.16 0.32 -2.64 16 2 C -0.14 -3.05 5.11 -26.73 -0.14 -3.19 16 3 C 0.24 5.65 1.83 -69.08 -0.13 5.53 16 4 H 0.05 1.31 6.64 -51.93 -0.34 0.96 16 5 C -0.54 -14.07 9.31 -34.44 -0.32 -14.39 16 6 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -25.94 13.96 55.43 0.77 -25.16 16 9 Si 0.88 21.53 24.41 -169.99 -4.15 17.38 16 10 H -0.27 -6.51 6.83 56.52 0.39 -6.12 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.32 6.53 56.52 0.37 -5.96 16 13 N -0.69 -13.09 4.98 -54.93 -0.27 -13.36 16 14 C 0.51 9.44 5.75 -10.98 -0.06 9.38 16 15 O -0.52 -11.94 13.64 -14.29 -0.20 -12.13 16 16 C 0.06 0.89 2.64 -27.89 -0.07 0.81 16 17 H 0.10 1.06 6.31 -51.93 -0.33 0.73 16 18 C -0.18 -2.01 9.13 37.15 0.34 -1.67 16 19 O -0.27 -4.45 9.20 -39.46 -0.36 -4.81 16 20 C 0.10 1.39 6.61 -39.18 -0.26 1.13 16 21 C -0.19 -1.88 8.25 -39.45 -0.33 -2.21 16 22 C -0.09 -0.71 10.04 -39.59 -0.40 -1.11 16 23 C -0.14 -1.05 10.04 -39.57 -0.40 -1.45 16 24 C -0.12 -1.13 10.02 -39.54 -0.40 -1.52 16 25 C 0.07 0.90 7.31 -39.30 -0.29 0.61 16 26 F -0.13 -2.00 17.11 2.25 0.04 -1.96 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 29 H 0.05 1.02 5.64 -51.93 -0.29 0.73 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.29 3.21 -51.92 -0.17 1.12 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.39 6.30 8.32 -40.82 -0.34 5.96 16 34 H 0.08 0.87 7.93 -51.92 -0.41 0.46 16 35 H 0.07 0.66 6.91 -51.93 -0.36 0.30 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.14 1.16 5.43 -52.48 -0.28 0.87 16 38 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -32.66 326.90 -6.54 -39.20 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.07 Total: 4.54 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -2.22 Total: -8.61 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.50 Total: -38.52 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.56 Total: -16.94 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.15 Total: 17.38 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.66 -6.54 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.189 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds