Wall clock time and date at job start Tue Mar 31 2020 08:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47333 * 2 1 4 4 H 1.09000 * 109.47177 * 54.99963 * 3 2 1 5 5 C 1.50705 * 109.46872 * 175.00012 * 3 2 1 6 6 H 1.07998 * 119.99759 * 119.99981 * 5 3 2 7 7 C 1.37875 * 119.99922 * 299.99550 * 5 3 2 8 8 N 1.31513 * 119.99902 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 120.00202 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47007 * 89.99515 * 9 7 5 11 11 H 1.48500 * 109.46878 * 209.99956 * 9 7 5 12 12 H 1.48502 * 109.46773 * 329.99615 * 9 7 5 13 13 N 1.46503 * 109.46842 * 294.99747 * 3 2 1 14 14 C 1.34776 * 119.99326 * 85.00283 * 13 3 2 15 15 O 1.21269 * 120.00609 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99246 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47285 * 55.00423 * 16 14 13 18 18 C 1.52993 * 109.47570 * 294.99853 * 16 14 13 19 19 O 1.42905 * 109.47064 * 175.00023 * 16 14 13 20 20 C 1.35955 * 117.00214 * 205.00981 * 19 16 14 21 21 C 1.38661 * 120.06270 * 354.51144 * 20 19 16 22 22 C 1.38181 * 119.97067 * 179.71901 * 21 20 19 23 23 C 1.38262 * 120.09480 * 0.55510 * 22 21 20 24 24 C 1.38255 * 120.12301 * 359.71933 * 23 22 21 25 25 C 1.38339 * 120.03355 * 0.02562 * 24 23 22 26 26 F 1.35093 * 120.04790 * 180.02562 * 25 24 23 27 27 H 1.09000 * 109.47400 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46969 * 300.00632 * 1 2 3 29 29 H 1.08996 * 109.46924 * 59.99742 * 1 2 3 30 30 H 1.08995 * 109.47039 * 239.99399 * 2 1 3 31 31 H 1.09009 * 109.46801 * 119.99954 * 2 1 3 32 32 H 0.97004 * 120.00201 * 179.97438 * 8 7 5 33 33 H 0.96996 * 119.99672 * 265.00006 * 13 3 2 34 34 H 1.09008 * 109.47099 * 60.00219 * 18 16 14 35 35 H 1.09004 * 109.47281 * 179.97438 * 18 16 14 36 36 H 1.09000 * 109.47500 * 300.00066 * 18 16 14 37 37 H 1.08004 * 120.01442 * 359.97438 * 21 20 19 38 38 H 1.07999 * 119.95642 * 180.27083 * 22 21 20 39 39 H 1.07999 * 119.94197 * 179.74244 * 23 22 21 40 40 H 1.07998 * 119.98688 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8793 1.3358 9 14 3.0963 0.1089 2.5702 10 1 2.8754 -1.3272 2.2635 11 1 3.7937 0.2349 3.8752 12 1 1.7877 0.8075 2.6387 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6644 -1.3669 15 8 -0.3394 2.6320 -0.4345 16 6 0.0368 3.3386 -2.6545 17 1 0.1532 2.6389 -3.4822 18 6 0.9294 4.5588 -2.8888 19 8 -1.3276 3.7554 -2.5716 20 6 -2.0037 3.8917 -3.7432 21 6 -1.3386 3.7410 -4.9505 22 6 -2.0288 3.8743 -6.1402 23 6 -3.3796 4.1690 -6.1287 24 6 -4.0454 4.3257 -4.9272 25 6 -3.3606 4.1882 -3.7331 26 9 -4.0111 4.3408 -2.5589 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 5.8771 0.4815 2.1128 33 1 2.2720 2.1230 -1.9978 34 1 1.9702 4.2409 -2.9521 35 1 0.6415 5.0462 -3.8203 36 1 0.8130 5.2585 -2.0612 37 1 -0.2824 3.5156 -4.9611 38 1 -1.5115 3.7525 -7.0804 39 1 -3.9157 4.2767 -7.0600 40 1 -5.1005 4.5563 -4.9209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358054744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:48 Heat of formation + Delta-G solvation = -111.172695 kcal Electronic energy + Delta-G solvation = -23956.663099 eV Core-core repulsion = 20264.769972 eV Total energy + Delta-G solvation = -3691.893127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.83012 -41.68097 -40.43782 -38.46369 -37.06007 -34.56582 -33.89525 -32.37426 -31.61189 -30.54090 -29.41701 -25.95677 -24.68717 -23.98115 -23.39671 -22.19755 -21.25603 -19.64912 -19.27481 -18.24515 -17.89631 -17.49405 -17.19752 -17.01281 -16.49838 -16.33446 -15.82200 -15.71150 -15.39816 -15.26890 -14.94889 -14.27405 -14.11718 -14.03539 -13.84703 -13.69381 -13.38449 -13.26568 -13.01450 -12.92431 -12.79862 -12.60611 -12.43592 -12.14510 -11.96805 -11.88952 -11.41236 -11.26961 -10.87994 -10.69867 -9.91942 -9.86123 -9.23037 -8.39367 -6.44414 0.14233 0.26666 1.25151 1.34422 1.43579 1.58315 1.60546 2.24593 2.61686 2.62578 2.96557 3.26906 3.55333 3.72196 3.81709 3.86742 3.98348 4.19313 4.26559 4.28018 4.35108 4.40980 4.46685 4.62841 4.68450 4.80299 4.96198 4.99636 5.06803 5.10412 5.12096 5.17229 5.28149 5.36939 5.44403 5.47082 5.58261 5.70618 6.10664 6.26018 6.57111 6.78698 7.17445 7.36969 8.75362 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.029376 B = 0.003652 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.932603 B = 7664.312516 C = 8097.167088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.250 3.750 4 H 0.019 0.981 5 C -0.530 4.530 6 H 0.064 0.936 7 C 0.034 3.966 8 N -0.930 5.930 9 Si 0.930 3.070 10 H -0.258 1.258 11 H -0.293 1.293 12 H -0.266 1.266 13 N -0.688 5.688 14 C 0.504 3.496 15 O -0.571 6.571 16 C 0.072 3.928 17 H 0.130 0.870 18 C -0.169 4.169 19 O -0.313 6.313 20 C 0.073 3.927 21 C -0.188 4.188 22 C -0.079 4.079 23 C -0.124 4.124 24 C -0.116 4.116 25 C 0.026 3.974 26 F -0.157 7.157 27 H 0.060 0.940 28 H 0.032 0.968 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.270 0.730 33 H 0.411 0.589 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.160 0.840 38 H 0.170 0.830 39 H 0.170 0.830 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.345 5.245 -19.836 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.175 4.175 3 C 0.146 3.854 4 H 0.037 0.963 5 C -0.568 4.568 6 H 0.082 0.918 7 C -0.166 4.166 8 N -0.569 5.569 9 Si 0.758 3.242 10 H -0.184 1.184 11 H -0.221 1.221 12 H -0.191 1.191 13 N -0.340 5.340 14 C 0.289 3.711 15 O -0.450 6.450 16 C 0.013 3.987 17 H 0.147 0.853 18 C -0.227 4.227 19 O -0.227 6.227 20 C 0.027 3.973 21 C -0.206 4.206 22 C -0.097 4.097 23 C -0.142 4.142 24 C -0.135 4.135 25 C 0.006 3.994 26 F -0.136 7.136 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.247 0.753 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.177 0.823 38 H 0.187 0.813 39 H 0.187 0.813 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.812 5.205 -18.807 24.499 hybrid contribution 0.215 -0.339 1.312 1.372 sum -14.597 4.866 -17.495 23.298 Atomic orbital electron populations 1.21769 0.95664 1.00551 1.01270 1.22218 0.95359 0.98533 1.01421 1.18820 0.93522 0.89575 0.83529 0.96319 1.21238 0.89931 1.38577 1.07102 0.91792 1.25461 0.95623 0.95899 0.99649 1.69953 1.10064 1.46069 1.30810 0.86133 0.79248 0.80102 0.78721 1.18395 1.22089 1.19052 1.45814 1.14957 1.55766 1.17419 1.20638 0.82199 0.78694 0.89555 1.90701 1.52356 1.60041 1.41895 1.22368 0.80817 0.99010 0.96481 0.85271 1.22340 1.00195 0.96086 1.04050 1.86244 1.25072 1.82636 1.28713 1.19481 0.90881 1.00180 0.86755 1.21568 1.02198 1.06200 0.90633 1.21522 0.94438 0.95449 0.98313 1.21412 0.94884 0.99983 0.97884 1.21355 1.01760 1.00445 0.89909 1.17657 0.88436 1.10645 0.82638 1.91446 1.81199 1.93918 1.46995 0.92100 0.94904 0.93109 0.90620 0.93707 0.92043 0.75287 0.88130 0.88214 0.92726 0.82253 0.81287 0.81277 0.82383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 8.52 71.98 0.61 -4.79 16 2 C -0.14 -5.87 5.11 30.59 0.16 -5.71 16 3 C 0.25 11.64 1.83 44.25 0.08 11.72 16 4 H 0.02 1.01 6.64 -2.39 -0.02 0.99 16 5 C -0.53 -28.08 9.31 25.60 0.24 -27.85 16 6 H 0.06 3.53 7.98 -2.91 -0.02 3.51 16 7 C 0.03 1.88 5.45 84.65 0.46 2.35 16 8 N -0.93 -54.84 13.96 21.45 0.30 -54.54 16 9 Si 0.93 44.73 24.41 68.60 1.67 46.41 16 10 H -0.26 -11.65 6.83 99.48 0.68 -10.97 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 12 H -0.27 -12.94 6.53 99.48 0.65 -12.29 16 13 N -0.69 -25.67 4.98 -446.09 -2.22 -27.90 16 14 C 0.50 18.79 5.75 87.66 0.50 19.29 16 15 O -0.57 -26.88 13.64 15.99 0.22 -26.66 16 16 C 0.07 1.95 2.64 29.85 0.08 2.03 16 17 H 0.13 2.52 6.31 -2.39 -0.02 2.51 16 18 C -0.17 -3.60 9.13 71.98 0.66 -2.95 16 19 O -0.31 -10.24 9.20 -74.06 -0.68 -10.92 16 20 C 0.07 1.89 6.61 22.53 0.15 2.04 16 21 C -0.19 -3.15 8.25 22.36 0.18 -2.97 16 22 C -0.08 -0.89 10.04 22.26 0.22 -0.67 16 23 C -0.12 -1.39 10.04 22.28 0.22 -1.17 16 24 C -0.12 -1.99 10.02 22.30 0.22 -1.77 16 25 C 0.03 0.68 7.31 22.45 0.16 0.84 16 26 F -0.16 -5.12 17.11 44.97 0.77 -4.35 16 27 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.03 1.42 7.85 -2.38 -0.02 1.41 16 29 H 0.05 2.01 5.64 -2.39 -0.01 2.00 16 30 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.04 2.02 3.21 -2.38 -0.01 2.01 16 32 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.41 12.59 8.32 -92.71 -0.77 11.82 16 34 H 0.10 1.81 7.93 -2.38 -0.02 1.79 16 35 H 0.10 1.55 6.91 -2.38 -0.02 1.54 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.16 1.94 5.43 -2.91 -0.02 1.92 16 38 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 39 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 40 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -74.90 326.90 4.23 -70.67 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.22 Total: 16.89 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 3.96 Total: -9.60 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -1.92 Total: -82.44 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -0.46 Total: -37.58 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.77 Total: -4.35 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.67 Total: 46.41 kcal Total: -74.90 4.23 -70.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.506 kcal (2) G-P(sol) polarization free energy of solvation -74.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds