Wall clock time and date at job start Tue Mar 31 2020 08:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46816 * 2 1 4 4 H 1.09000 * 109.47416 * 305.42901 * 3 2 1 5 5 C 1.50702 * 109.47053 * 185.43295 * 3 2 1 6 6 H 1.08002 * 120.00013 * 245.59072 * 5 3 2 7 7 C 1.37879 * 120.00199 * 65.31118 * 5 3 2 8 8 N 1.31513 * 119.99547 * 7.27563 * 7 5 3 9 9 Si 1.86793 * 120.00215 * 187.27720 * 7 5 3 10 10 H 1.48501 * 109.47334 * 94.95063 * 9 7 5 11 11 H 1.48501 * 109.47351 * 214.95102 * 9 7 5 12 12 H 1.48498 * 109.47080 * 334.95192 * 9 7 5 13 13 N 1.46501 * 109.47601 * 65.43281 * 3 2 1 14 14 C 1.34774 * 119.99836 * 275.00025 * 13 3 2 15 15 O 1.21278 * 120.00108 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99940 * 179.97438 * 14 13 3 17 17 H 1.08999 * 109.47116 * 59.99916 * 16 14 13 18 18 C 1.53008 * 109.47251 * 299.99983 * 16 14 13 19 19 O 1.42900 * 109.47357 * 180.02562 * 16 14 13 20 20 C 1.35955 * 117.00187 * 205.04633 * 19 16 14 21 21 C 1.38668 * 120.05989 * 354.62823 * 20 19 16 22 22 C 1.38181 * 119.96520 * 179.72216 * 21 20 19 23 23 C 1.38260 * 120.09780 * 0.55048 * 22 21 20 24 24 C 1.38255 * 120.12452 * 359.72467 * 23 22 21 25 25 C 1.38334 * 120.03075 * 359.97438 * 24 23 22 26 26 F 1.35101 * 120.04821 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.47011 * 300.00257 * 1 2 3 28 28 H 1.09004 * 109.46823 * 60.00119 * 1 2 3 29 29 H 1.08999 * 109.47016 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47333 * 240.00153 * 2 1 3 31 31 H 1.09001 * 109.47132 * 119.99446 * 2 1 3 32 32 H 0.97003 * 119.99661 * 179.97438 * 8 7 5 33 33 H 0.97003 * 120.00009 * 94.99259 * 13 3 2 34 34 H 1.08998 * 109.46873 * 59.99545 * 18 16 14 35 35 H 1.08993 * 109.47272 * 180.02562 * 18 16 14 36 36 H 1.08999 * 109.47006 * 300.00000 * 18 16 14 37 37 H 1.08003 * 120.01546 * 359.97036 * 21 20 19 38 38 H 1.07997 * 119.94874 * 180.26915 * 22 21 20 39 39 H 1.07995 * 119.93819 * 179.74521 * 23 22 21 40 40 H 1.07997 * 119.98691 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5994 1.9837 -0.8374 5 6 3.5410 1.4447 -0.1345 6 1 4.1554 1.8049 0.6774 7 6 4.1301 0.9815 -1.2918 8 7 3.3852 0.6724 -2.3306 9 14 5.9862 0.7928 -1.3842 10 1 6.3587 -0.6063 -1.0541 11 1 6.4491 1.1174 -2.7574 12 1 6.6266 1.7174 -0.4145 13 7 1.6614 2.0944 1.2562 14 6 0.4449 2.6610 1.3813 15 8 -0.3361 2.6316 0.4540 16 6 0.0552 3.3311 2.6737 17 1 0.7481 4.1459 2.8838 18 6 0.1069 2.3110 3.8130 19 8 -1.2712 3.8505 2.5599 20 6 -1.5961 4.8956 3.3665 21 6 -0.6978 5.3382 4.3257 22 6 -1.0278 6.4043 5.1406 23 6 -2.2571 7.0232 5.0088 24 6 -3.1580 6.5814 4.0577 25 6 -2.8306 5.5186 3.2349 26 9 -3.7105 5.0870 2.3050 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7997 0.3468 -3.1450 33 1 2.2862 2.1182 1.9978 34 1 1.1184 1.9144 3.8999 35 1 -0.1754 2.7956 4.7476 36 1 -0.5860 1.4963 3.6028 37 1 0.2609 4.8526 4.4330 38 1 -0.3262 6.7516 5.8845 39 1 -2.5139 7.8535 5.6498 40 1 -4.1177 7.0662 3.9569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358054745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:51 Heat of formation + Delta-G solvation = -98.870319 kcal Electronic energy + Delta-G solvation = -23849.411914 eV Core-core repulsion = 20158.052258 eV Total energy + Delta-G solvation = -3691.359656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.75635 -40.48358 -38.96828 -37.39219 -35.02283 -32.86618 -31.92356 -30.90866 -30.63169 -29.63897 -26.99218 -24.74742 -23.37428 -22.81048 -22.36751 -20.30604 -19.39795 -18.64042 -17.63313 -17.05140 -16.44491 -16.00514 -15.67943 -15.47827 -15.20879 -15.01996 -14.56965 -14.40153 -14.17568 -13.61344 -13.12175 -13.00862 -12.72421 -12.65160 -12.45228 -12.10349 -12.01793 -11.71597 -11.51985 -11.36457 -11.22934 -11.04151 -10.97126 -10.81389 -10.36612 -10.24603 -9.71016 -9.17234 -9.12944 -8.98085 -8.53593 -8.30055 -7.92451 -6.17703 -4.24761 0.92648 1.08124 2.77557 3.21489 3.23015 3.29733 3.31130 3.39827 3.99166 4.15944 4.33246 4.54290 4.62960 4.71357 4.93614 5.01040 5.02944 5.15316 5.15870 5.30160 5.52425 5.59057 5.78768 5.85852 5.97425 6.01300 6.16372 6.33746 6.38716 6.47211 6.58527 6.96956 7.12045 7.21574 7.28808 7.35552 7.56698 7.66715 7.80045 8.03415 8.56206 8.73956 9.02649 9.41456 10.90204 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.025463 B = 0.003496 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.353956 B = 8006.440293 C = 8489.362634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.270 3.730 4 H 0.057 0.943 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.702 5.702 14 C 0.505 3.495 15 O -0.522 6.522 16 C 0.061 3.939 17 H 0.095 0.905 18 C -0.174 4.174 19 O -0.274 6.274 20 C 0.105 3.895 21 C -0.189 4.189 22 C -0.089 4.089 23 C -0.136 4.136 24 C -0.118 4.118 25 C 0.068 3.932 26 F -0.130 7.130 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.024 0.976 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 9.104 16.753 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.169 3.831 4 H 0.074 0.926 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.515 5.515 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.352 5.352 14 C 0.288 3.712 15 O -0.398 6.398 16 C 0.001 3.999 17 H 0.113 0.887 18 C -0.232 4.232 19 O -0.186 6.186 20 C 0.058 3.942 21 C -0.207 4.207 22 C -0.108 4.108 23 C -0.154 4.154 24 C -0.136 4.136 25 C 0.048 3.952 26 F -0.108 7.108 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.158 0.842 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.835 8.866 15.650 19.619 hybrid contribution 1.359 -0.195 0.220 1.390 sum -6.476 8.671 15.870 19.209 Atomic orbital electron populations 1.21858 0.97989 0.98278 1.01582 1.21862 0.92967 0.99730 1.01356 1.18850 0.94540 0.89022 0.80688 0.92552 1.21175 0.90437 1.44272 1.01745 0.92028 1.24893 0.98523 0.95034 0.95084 1.69976 1.35428 1.43196 1.02944 0.86474 0.84898 0.78450 0.77522 1.20537 1.21101 1.19827 1.46403 1.13761 1.56172 1.18839 1.19750 0.83482 0.80194 0.87814 1.90734 1.50593 1.58279 1.40152 1.22472 0.83356 0.97393 0.96660 0.88713 1.22328 1.04220 0.99638 0.97014 1.86319 1.30849 1.43913 1.57503 1.19176 0.93554 0.89381 0.92088 1.21283 1.00525 1.00899 0.98015 1.21008 0.96667 0.94687 0.98398 1.20896 0.93939 1.01309 0.99287 1.21021 1.01290 0.95635 0.95688 1.17045 0.87228 0.97797 0.93099 1.91531 1.67003 1.89034 1.63252 0.94034 0.92959 0.95674 0.89908 0.94686 0.92504 0.77955 0.89895 0.91201 0.90632 0.84177 0.85091 0.84998 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.52 37.16 0.32 -2.79 16 2 C -0.12 -2.84 5.50 -26.73 -0.15 -2.98 16 3 C 0.27 6.63 2.10 -69.08 -0.15 6.49 16 4 H 0.06 1.64 7.54 -51.93 -0.39 1.25 16 5 C -0.54 -13.82 8.67 -34.44 -0.30 -14.12 16 6 H 0.06 1.50 7.73 -52.49 -0.41 1.09 16 7 C 0.07 1.82 5.19 -17.82 -0.09 1.72 16 8 N -0.88 -24.56 12.04 55.43 0.67 -23.89 16 9 Si 0.90 20.23 29.54 -169.99 -5.02 15.20 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 N -0.70 -13.89 4.92 -54.93 -0.27 -14.16 16 14 C 0.51 9.99 5.82 -10.99 -0.06 9.93 16 15 O -0.52 -12.70 13.64 -14.35 -0.20 -12.90 16 16 C 0.06 0.91 2.65 -27.88 -0.07 0.83 16 17 H 0.10 1.17 6.30 -51.93 -0.33 0.84 16 18 C -0.17 -2.02 9.07 37.16 0.34 -1.68 16 19 O -0.27 -4.67 9.20 -39.51 -0.36 -5.03 16 20 C 0.11 1.48 6.61 -39.18 -0.26 1.22 16 21 C -0.19 -2.01 8.25 -39.44 -0.33 -2.33 16 22 C -0.09 -0.76 10.04 -39.59 -0.40 -1.16 16 23 C -0.14 -1.13 10.04 -39.57 -0.40 -1.52 16 24 C -0.12 -1.19 10.02 -39.54 -0.40 -1.59 16 25 C 0.07 0.94 7.31 -39.30 -0.29 0.65 16 26 F -0.13 -2.08 17.11 2.25 0.04 -2.04 16 27 H 0.04 0.90 5.64 -51.93 -0.29 0.61 16 28 H 0.05 1.26 7.87 -51.93 -0.41 0.85 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 2.16 6.69 -51.93 -0.35 1.81 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.39 6.40 7.94 -40.82 -0.32 6.07 16 34 H 0.08 0.82 7.56 -51.93 -0.39 0.43 16 35 H 0.07 0.66 6.93 -51.93 -0.36 0.30 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.14 1.24 5.44 -52.48 -0.29 0.95 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 334.12 15.07 5.04 5.04 Total: -1.00 -31.91 334.12 -7.55 -39.45 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.21 Total: 5.66 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -2.23 Total: -7.33 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.40 Total: -38.05 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.56 Total: -17.93 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.91 -7.55 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.417 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds