Wall clock time and date at job start Tue Mar 31 2020 08:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46816 * 2 1 4 4 H 1.09000 * 109.47416 * 305.42901 * 3 2 1 5 5 C 1.50702 * 109.47053 * 185.43295 * 3 2 1 6 6 H 1.08002 * 120.00013 * 245.59072 * 5 3 2 7 7 C 1.37879 * 120.00199 * 65.31118 * 5 3 2 8 8 N 1.31513 * 119.99547 * 7.27563 * 7 5 3 9 9 Si 1.86793 * 120.00215 * 187.27720 * 7 5 3 10 10 H 1.48501 * 109.47334 * 94.95063 * 9 7 5 11 11 H 1.48501 * 109.47351 * 214.95102 * 9 7 5 12 12 H 1.48498 * 109.47080 * 334.95192 * 9 7 5 13 13 N 1.46501 * 109.47601 * 65.43281 * 3 2 1 14 14 C 1.34774 * 119.99836 * 275.00025 * 13 3 2 15 15 O 1.21278 * 120.00108 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99940 * 179.97438 * 14 13 3 17 17 H 1.08999 * 109.47116 * 59.99916 * 16 14 13 18 18 C 1.53008 * 109.47251 * 299.99983 * 16 14 13 19 19 O 1.42900 * 109.47357 * 180.02562 * 16 14 13 20 20 C 1.35955 * 117.00187 * 205.04633 * 19 16 14 21 21 C 1.38668 * 120.05989 * 354.62823 * 20 19 16 22 22 C 1.38181 * 119.96520 * 179.72216 * 21 20 19 23 23 C 1.38260 * 120.09780 * 0.55048 * 22 21 20 24 24 C 1.38255 * 120.12452 * 359.72467 * 23 22 21 25 25 C 1.38334 * 120.03075 * 359.97438 * 24 23 22 26 26 F 1.35101 * 120.04821 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.47011 * 300.00257 * 1 2 3 28 28 H 1.09004 * 109.46823 * 60.00119 * 1 2 3 29 29 H 1.08999 * 109.47016 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47333 * 240.00153 * 2 1 3 31 31 H 1.09001 * 109.47132 * 119.99446 * 2 1 3 32 32 H 0.97003 * 119.99661 * 179.97438 * 8 7 5 33 33 H 0.97003 * 120.00009 * 94.99259 * 13 3 2 34 34 H 1.08998 * 109.46873 * 59.99545 * 18 16 14 35 35 H 1.08993 * 109.47272 * 180.02562 * 18 16 14 36 36 H 1.08999 * 109.47006 * 300.00000 * 18 16 14 37 37 H 1.08003 * 120.01546 * 359.97036 * 21 20 19 38 38 H 1.07997 * 119.94874 * 180.26915 * 22 21 20 39 39 H 1.07995 * 119.93819 * 179.74521 * 23 22 21 40 40 H 1.07997 * 119.98691 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5994 1.9837 -0.8374 5 6 3.5410 1.4447 -0.1345 6 1 4.1554 1.8049 0.6774 7 6 4.1301 0.9815 -1.2918 8 7 3.3852 0.6724 -2.3306 9 14 5.9862 0.7928 -1.3842 10 1 6.3587 -0.6063 -1.0541 11 1 6.4491 1.1174 -2.7574 12 1 6.6266 1.7174 -0.4145 13 7 1.6614 2.0944 1.2562 14 6 0.4449 2.6610 1.3813 15 8 -0.3361 2.6316 0.4540 16 6 0.0552 3.3311 2.6737 17 1 0.7481 4.1459 2.8838 18 6 0.1069 2.3110 3.8130 19 8 -1.2712 3.8505 2.5599 20 6 -1.5961 4.8956 3.3665 21 6 -0.6978 5.3382 4.3257 22 6 -1.0278 6.4043 5.1406 23 6 -2.2571 7.0232 5.0088 24 6 -3.1580 6.5814 4.0577 25 6 -2.8306 5.5186 3.2349 26 9 -3.7105 5.0870 2.3050 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7997 0.3468 -3.1450 33 1 2.2862 2.1182 1.9978 34 1 1.1184 1.9144 3.8999 35 1 -0.1754 2.7956 4.7476 36 1 -0.5860 1.4963 3.6028 37 1 0.2609 4.8526 4.4330 38 1 -0.3262 6.7516 5.8845 39 1 -2.5139 7.8535 5.6498 40 1 -4.1177 7.0662 3.9569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358054745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:50 Heat of formation + Delta-G solvation = -119.017956 kcal Electronic energy + Delta-G solvation = -23850.285581 eV Core-core repulsion = 20158.052258 eV Total energy + Delta-G solvation = -3692.233323 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.82888 -41.63396 -40.34907 -38.42246 -36.87310 -34.52456 -33.55885 -32.25632 -31.61011 -30.53498 -28.90027 -25.93148 -24.98635 -23.93250 -23.36148 -21.94459 -21.12129 -19.63726 -19.14143 -18.09287 -17.77136 -17.20993 -17.07981 -17.06751 -16.50900 -16.24704 -15.86046 -15.59565 -15.38868 -15.08294 -14.60687 -14.21774 -14.13540 -13.89131 -13.54019 -13.36145 -13.29084 -13.23667 -12.91528 -12.90116 -12.64662 -12.58886 -12.19810 -12.14358 -12.09024 -11.94350 -11.63919 -11.09652 -10.65710 -10.53661 -9.91767 -9.72038 -9.22514 -8.18858 -6.33597 0.14202 0.26891 1.45733 1.46172 1.56733 1.63626 1.71282 2.40219 2.62633 2.72142 3.13250 3.27343 3.59772 3.75921 3.82970 3.91846 3.99336 4.27089 4.35160 4.43265 4.46504 4.50405 4.64547 4.69967 4.70483 4.99921 5.02364 5.11245 5.12324 5.20803 5.28039 5.38748 5.44023 5.48346 5.59149 5.69769 5.73199 5.88544 6.05496 6.26697 6.75029 6.90202 7.32170 7.50552 8.89767 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.025463 B = 0.003496 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.353956 B = 8006.440293 C = 8489.362634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C 0.277 3.723 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.078 0.922 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.970 3.030 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.259 1.259 13 N -0.692 5.692 14 C 0.498 3.502 15 O -0.577 6.577 16 C 0.071 3.929 17 H 0.125 0.875 18 C -0.167 4.167 19 O -0.315 6.315 20 C 0.072 3.928 21 C -0.188 4.188 22 C -0.079 4.079 23 C -0.124 4.124 24 C -0.116 4.116 25 C 0.024 3.976 26 F -0.157 7.157 27 H 0.044 0.956 28 H 0.020 0.980 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.264 0.736 33 H 0.408 0.592 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.160 0.840 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.377 10.506 20.730 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.174 3.826 4 H 0.017 0.983 5 C -0.585 4.585 6 H 0.096 0.904 7 C -0.186 4.186 8 N -0.557 5.557 9 Si 0.795 3.205 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.182 1.182 13 N -0.343 5.343 14 C 0.284 3.716 15 O -0.457 6.457 16 C 0.012 3.988 17 H 0.142 0.858 18 C -0.224 4.224 19 O -0.229 6.229 20 C 0.026 3.974 21 C -0.206 4.206 22 C -0.097 4.097 23 C -0.142 4.142 24 C -0.134 4.134 25 C 0.005 3.995 26 F -0.136 7.136 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.244 0.756 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.178 0.822 38 H 0.188 0.812 39 H 0.188 0.812 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.061 10.286 19.693 23.029 hybrid contribution 0.739 -0.500 -0.957 1.309 sum -5.321 9.786 18.736 21.797 Atomic orbital electron populations 1.21699 0.97173 0.99293 1.00182 1.21710 0.93563 0.99041 1.00783 1.18420 0.94069 0.89068 0.81054 0.98321 1.21555 0.91006 1.43745 1.02177 0.90368 1.25816 1.03324 0.94704 0.94709 1.70142 1.37540 1.44385 1.03601 0.85357 0.79020 0.78785 0.77328 1.19840 1.21688 1.18249 1.46083 1.14521 1.55834 1.17909 1.20704 0.82483 0.79266 0.89175 1.90710 1.52097 1.60218 1.42665 1.22415 0.83666 0.98653 0.94074 0.85756 1.22340 1.05116 0.98322 0.96617 1.86244 1.31628 1.45553 1.59426 1.19518 0.94699 0.89676 0.93492 1.21574 1.00478 1.01458 0.97125 1.21526 0.97218 0.93076 0.97858 1.21414 0.93155 1.01417 0.98191 1.21356 1.02645 0.94302 0.95140 1.17686 0.87586 0.99925 0.94351 1.91447 1.67933 1.89646 1.64599 0.93737 0.96078 0.93250 0.92741 0.92704 0.92679 0.75618 0.87720 0.88332 0.92488 0.82250 0.81185 0.81181 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.52 71.98 0.61 -5.20 16 2 C -0.11 -5.42 5.50 30.60 0.17 -5.25 16 3 C 0.28 14.03 2.10 44.25 0.09 14.12 16 4 H 0.00 -0.07 7.54 -2.39 -0.02 -0.09 16 5 C -0.55 -28.12 8.67 25.60 0.22 -27.90 16 6 H 0.08 3.67 7.73 -2.91 -0.02 3.65 16 7 C 0.01 0.79 5.19 84.66 0.44 1.23 16 8 N -0.92 -53.15 12.04 21.45 0.26 -52.89 16 9 Si 0.97 41.29 29.54 68.60 2.03 43.31 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 13 N -0.69 -27.44 4.92 -446.10 -2.19 -29.63 16 14 C 0.50 20.17 5.82 87.66 0.51 20.68 16 15 O -0.58 -29.90 13.64 16.01 0.22 -29.68 16 16 C 0.07 2.06 2.65 29.85 0.08 2.14 16 17 H 0.13 2.77 6.30 -2.39 -0.02 2.76 16 18 C -0.17 -3.48 9.07 71.98 0.65 -2.83 16 19 O -0.31 -11.01 9.20 -74.01 -0.68 -11.69 16 20 C 0.07 2.01 6.61 22.53 0.15 2.15 16 21 C -0.19 -3.43 8.25 22.36 0.18 -3.24 16 22 C -0.08 -0.97 10.04 22.26 0.22 -0.75 16 23 C -0.12 -1.53 10.04 22.28 0.22 -1.31 16 24 C -0.12 -2.14 10.02 22.30 0.22 -1.92 16 25 C 0.02 0.68 7.31 22.45 0.16 0.84 16 26 F -0.16 -5.44 17.11 44.97 0.77 -4.67 16 27 H 0.04 2.00 5.64 -2.39 -0.01 1.98 16 28 H 0.02 1.06 7.87 -2.39 -0.02 1.04 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 2.95 6.69 -2.39 -0.02 2.93 16 31 H 0.05 2.39 8.14 -2.39 -0.02 2.38 16 32 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.41 12.74 7.94 -92.71 -0.74 12.00 16 34 H 0.10 1.70 7.56 -2.39 -0.02 1.69 16 35 H 0.10 1.51 6.93 -2.39 -0.02 1.49 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.16 2.15 5.44 -2.91 -0.02 2.13 16 38 H 0.17 0.82 8.06 -2.91 -0.02 0.79 16 39 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 40 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -76.31 334.12 4.68 -71.63 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.33 Total: 20.86 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 3.95 Total: -7.23 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -1.94 Total: -82.52 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -0.46 Total: -41.37 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.77 Total: -4.67 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -76.31 4.68 -71.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358054745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.388 kcal (2) G-P(sol) polarization free energy of solvation -76.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds