Wall clock time and date at job start Tue Mar 31 2020 08:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99972 * 2 1 4 4 N 1.46500 * 109.46959 * 126.17221 * 3 2 1 5 5 C 1.46501 * 119.99980 * 277.35416 * 4 3 2 6 6 C 1.50700 * 109.46763 * 269.99961 * 5 4 3 7 7 H 1.07999 * 120.00391 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99847 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99901 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99907 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46989 * 90.00297 * 10 8 6 12 12 H 1.48505 * 109.46972 * 209.99993 * 10 8 6 13 13 H 1.48497 * 109.46969 * 330.00123 * 10 8 6 14 14 C 1.34780 * 119.99736 * 97.35176 * 4 3 2 15 15 O 1.21564 * 119.99624 * 185.62382 * 14 4 3 16 16 C 1.47764 * 120.00259 * 5.62743 * 14 4 3 17 17 C 1.40658 * 119.75117 * 130.76165 * 16 14 4 18 18 C 1.35724 * 120.85054 * 180.28386 * 17 16 14 19 19 C 1.40700 * 120.01923 * 359.69853 * 18 17 16 20 20 C 1.40486 * 121.04500 * 180.02562 * 19 18 17 21 21 C 1.36144 * 119.72183 * 180.02562 * 20 19 18 22 22 C 1.39358 * 121.00572 * 0.02562 * 21 20 19 23 23 C 1.36090 * 120.96018 * 359.97417 * 22 21 20 24 24 C 1.40658 * 119.65963 * 0.02632 * 23 22 21 25 25 C 1.38492 * 119.75076 * 310.49128 * 16 14 4 26 26 H 1.08006 * 119.99961 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99867 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00302 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47206 * 6.17200 * 3 2 1 30 30 H 1.08995 * 109.46962 * 246.17121 * 3 2 1 31 31 H 1.08997 * 109.47180 * 29.99481 * 5 4 3 32 32 H 1.08996 * 109.46790 * 150.00492 * 5 4 3 33 33 H 0.96999 * 119.99887 * 179.97438 * 9 8 6 34 34 H 1.08009 * 119.57485 * 359.97438 * 17 16 14 35 35 H 1.07996 * 119.98946 * 179.72524 * 18 17 16 36 36 H 1.07999 * 120.14031 * 0.05473 * 20 19 18 37 37 H 1.07995 * 119.49459 * 180.02562 * 21 20 19 38 38 H 1.08009 * 119.52257 * 179.97438 * 22 21 20 39 39 H 1.08006 * 120.16801 * 180.02562 * 23 22 21 40 40 H 1.08004 * 120.26990 * 0.02562 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0137 1.3204 1.1150 5 6 2.5602 1.6873 2.4589 6 6 2.7018 3.1757 2.6478 7 1 3.0903 3.7872 1.8468 8 6 2.3344 3.7570 3.8428 9 7 1.8608 3.0124 4.8180 10 14 2.5105 5.6019 4.0773 11 1 1.2589 6.2769 3.6497 12 1 2.7673 5.8965 5.5100 13 1 3.6455 6.0987 3.2586 14 6 4.3050 0.9968 0.9044 15 8 5.0708 0.9098 1.8444 16 6 4.7898 0.7479 -0.4691 17 6 5.9601 1.3833 -0.9220 18 6 6.4223 1.1752 -2.1811 19 6 5.7326 0.3098 -3.0500 20 6 6.1920 0.0785 -4.3573 21 6 5.5033 -0.7639 -5.1757 22 6 4.3450 -1.4030 -4.7373 23 6 3.8694 -1.2037 -3.4779 24 6 4.5541 -0.3403 -2.6037 25 6 4.0916 -0.1135 -1.2988 26 1 -0.5400 0.9354 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3604 2.1307 0.1105 30 1 2.6047 1.4122 -0.9400 31 1 1.5147 1.4037 2.5796 32 1 3.1659 1.1676 3.2012 33 1 1.6027 3.4213 5.6589 34 1 6.4952 2.0492 -0.2610 35 1 7.3199 1.6737 -2.5159 36 1 7.0880 0.5664 -4.7116 37 1 5.8599 -0.9394 -6.1798 38 1 3.8172 -2.0661 -5.4068 39 1 2.9707 -1.7059 -3.1514 40 1 3.1956 -0.6025 -0.9459 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359440239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:31 Heat of formation + Delta-G solvation = 36.911861 kcal Electronic energy + Delta-G solvation = -22857.390854 eV Core-core repulsion = 19602.688380 eV Total energy + Delta-G solvation = -3254.702474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.56014 -38.97886 -36.11200 -35.78843 -33.28077 -32.74091 -32.08824 -30.45938 -29.43219 -27.45115 -25.66289 -24.16696 -23.30629 -22.30372 -22.02948 -20.11152 -19.07787 -17.40157 -17.03321 -16.66977 -16.49527 -15.62879 -15.22404 -14.89270 -14.58952 -14.40779 -14.05956 -13.73934 -13.54725 -13.39655 -13.18456 -12.81922 -12.62035 -12.16994 -11.91547 -11.69735 -11.32981 -11.25167 -11.22750 -11.09988 -10.94875 -10.74689 -10.60298 -10.19972 -10.01298 -9.66308 -9.20818 -9.08111 -8.59762 -8.44283 -7.90258 -7.73051 -6.05358 -4.10421 0.42196 0.89837 1.97098 2.41023 2.79517 3.29559 3.36101 3.39355 3.49381 3.91939 4.13682 4.43549 4.52696 4.74009 4.77759 4.91654 5.01762 5.09838 5.23798 5.27908 5.28712 5.32737 5.39361 5.40721 5.61313 5.73167 5.86428 5.97219 6.00186 6.12046 6.18756 6.20114 6.35035 6.50155 6.51733 6.73103 6.77167 6.86939 6.92683 7.08295 7.43234 7.51115 7.90936 8.21489 8.33750 8.85433 9.01409 9.54603 11.02783 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.004162 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.211090 B = 6725.489311 C = 7504.631872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.173 4.173 3 C 0.127 3.873 4 N -0.584 5.584 5 C 0.246 3.754 6 C -0.529 4.529 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.546 3.454 15 O -0.533 6.533 16 C -0.105 4.105 17 C -0.070 4.070 18 C -0.116 4.116 19 C -0.043 4.043 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.098 4.098 24 C -0.057 4.057 25 C -0.087 4.087 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.263 0.737 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.619 -7.786 -19.951 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.192 4.192 3 C 0.003 3.997 4 N -0.314 5.314 5 C 0.127 3.873 6 C -0.568 4.568 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.332 3.668 15 O -0.411 6.411 16 C -0.108 4.108 17 C -0.088 4.088 18 C -0.133 4.133 19 C -0.043 4.043 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.143 4.143 23 C -0.116 4.116 24 C -0.057 4.057 25 C -0.105 4.105 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.124 0.876 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.942 -7.794 -19.208 20.937 hybrid contribution -0.028 0.994 0.217 1.018 sum 2.914 -6.800 -18.991 20.382 Atomic orbital electron populations 1.23831 0.95734 1.01895 0.99890 1.23420 0.96410 0.98798 1.00555 1.20774 0.92858 0.95364 0.90659 1.48170 1.06776 1.64962 1.11477 1.19323 0.95525 0.95698 0.76706 1.21435 1.43152 0.92497 0.99716 0.92390 1.24928 0.95034 0.98448 0.95587 1.69935 1.43178 1.35444 1.04645 0.86498 0.78403 0.85102 0.77446 1.20616 1.21052 1.19863 1.18240 0.82815 0.78089 0.87656 1.90769 1.55056 1.51848 1.43386 1.20224 0.96435 0.99080 0.95053 1.20857 0.94221 0.98042 0.95724 1.20899 1.00105 0.98780 0.93566 1.18178 0.94728 0.97018 0.94374 1.21026 0.99959 0.98806 0.92875 1.20843 0.95656 0.97261 0.99742 1.20809 0.96837 1.00373 0.96239 1.21077 0.99437 0.97335 0.93704 1.18022 0.95323 0.98110 0.94204 1.21926 0.99235 0.97244 0.92102 0.88155 0.88623 0.87559 0.89588 0.89913 0.94691 0.93616 0.92684 0.85062 0.85215 0.85654 0.86171 0.86085 0.85482 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 14.32 29.01 0.42 -1.85 16 2 C -0.17 -2.48 8.59 -36.02 -0.31 -2.79 16 3 C 0.13 2.15 5.34 -5.19 -0.03 2.12 16 4 N -0.58 -12.63 2.45 -177.58 -0.43 -13.07 16 5 C 0.25 6.49 5.21 -5.19 -0.03 6.46 16 6 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 10 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.55 11.92 7.20 -12.36 -0.09 11.83 16 15 O -0.53 -13.90 16.58 5.31 0.09 -13.81 16 16 C -0.10 -1.81 4.95 -105.00 -0.52 -2.33 16 17 C -0.07 -1.09 9.61 -39.57 -0.38 -1.47 16 18 C -0.12 -1.47 9.73 -39.55 -0.38 -1.86 16 19 C -0.04 -0.54 5.75 -106.76 -0.61 -1.15 16 20 C -0.11 -1.10 9.76 -39.49 -0.39 -1.48 16 21 C -0.12 -1.05 9.95 -39.92 -0.40 -1.45 16 22 C -0.12 -1.14 9.95 -39.94 -0.40 -1.54 16 23 C -0.10 -1.03 9.77 -39.44 -0.39 -1.42 16 24 C -0.06 -0.73 5.74 -106.85 -0.61 -1.35 16 25 C -0.09 -1.25 7.23 -38.72 -0.28 -1.53 16 26 H 0.10 1.28 7.85 -52.48 -0.41 0.87 16 27 H 0.10 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.11 1.43 6.47 -52.49 -0.34 1.09 16 29 H 0.09 1.49 7.78 -51.93 -0.40 1.09 16 30 H 0.08 1.26 5.30 -51.93 -0.28 0.98 16 31 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.14 1.89 4.17 -52.48 -0.22 1.67 16 LS Contribution 340.61 15.07 5.13 5.13 Total: -1.00 -33.31 340.61 -9.27 -42.58 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.96 Total: 1.63 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -4.81 Total: -13.47 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.30 Total: -38.89 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.09 Total: -13.81 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.31 -9.27 -42.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359440239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.491 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds