Wall clock time and date at job start Tue Mar 31 2020 08:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99972 * 2 1 4 4 N 1.46500 * 109.46959 * 126.17221 * 3 2 1 5 5 C 1.46501 * 119.99980 * 277.35416 * 4 3 2 6 6 C 1.50700 * 109.46763 * 269.99961 * 5 4 3 7 7 H 1.07999 * 120.00391 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99847 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99901 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99907 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46989 * 90.00297 * 10 8 6 12 12 H 1.48505 * 109.46972 * 209.99993 * 10 8 6 13 13 H 1.48497 * 109.46969 * 330.00123 * 10 8 6 14 14 C 1.34780 * 119.99736 * 97.35176 * 4 3 2 15 15 O 1.21564 * 119.99624 * 185.62382 * 14 4 3 16 16 C 1.47764 * 120.00259 * 5.62743 * 14 4 3 17 17 C 1.40658 * 119.75117 * 130.76165 * 16 14 4 18 18 C 1.35724 * 120.85054 * 180.28386 * 17 16 14 19 19 C 1.40700 * 120.01923 * 359.69853 * 18 17 16 20 20 C 1.40486 * 121.04500 * 180.02562 * 19 18 17 21 21 C 1.36144 * 119.72183 * 180.02562 * 20 19 18 22 22 C 1.39358 * 121.00572 * 0.02562 * 21 20 19 23 23 C 1.36090 * 120.96018 * 359.97417 * 22 21 20 24 24 C 1.40658 * 119.65963 * 0.02632 * 23 22 21 25 25 C 1.38492 * 119.75076 * 310.49128 * 16 14 4 26 26 H 1.08006 * 119.99961 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99867 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00302 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47206 * 6.17200 * 3 2 1 30 30 H 1.08995 * 109.46962 * 246.17121 * 3 2 1 31 31 H 1.08997 * 109.47180 * 29.99481 * 5 4 3 32 32 H 1.08996 * 109.46790 * 150.00492 * 5 4 3 33 33 H 0.96999 * 119.99887 * 179.97438 * 9 8 6 34 34 H 1.08009 * 119.57485 * 359.97438 * 17 16 14 35 35 H 1.07996 * 119.98946 * 179.72524 * 18 17 16 36 36 H 1.07999 * 120.14031 * 0.05473 * 20 19 18 37 37 H 1.07995 * 119.49459 * 180.02562 * 21 20 19 38 38 H 1.08009 * 119.52257 * 179.97438 * 22 21 20 39 39 H 1.08006 * 120.16801 * 180.02562 * 23 22 21 40 40 H 1.08004 * 120.26990 * 0.02562 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0137 1.3204 1.1150 5 6 2.5602 1.6873 2.4589 6 6 2.7018 3.1757 2.6478 7 1 3.0903 3.7872 1.8468 8 6 2.3344 3.7570 3.8428 9 7 1.8608 3.0124 4.8180 10 14 2.5105 5.6019 4.0773 11 1 1.2589 6.2769 3.6497 12 1 2.7673 5.8965 5.5100 13 1 3.6455 6.0987 3.2586 14 6 4.3050 0.9968 0.9044 15 8 5.0708 0.9098 1.8444 16 6 4.7898 0.7479 -0.4691 17 6 5.9601 1.3833 -0.9220 18 6 6.4223 1.1752 -2.1811 19 6 5.7326 0.3098 -3.0500 20 6 6.1920 0.0785 -4.3573 21 6 5.5033 -0.7639 -5.1757 22 6 4.3450 -1.4030 -4.7373 23 6 3.8694 -1.2037 -3.4779 24 6 4.5541 -0.3403 -2.6037 25 6 4.0916 -0.1135 -1.2988 26 1 -0.5400 0.9354 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3604 2.1307 0.1105 30 1 2.6047 1.4122 -0.9400 31 1 1.5147 1.4037 2.5796 32 1 3.1659 1.1676 3.2012 33 1 1.6027 3.4213 5.6589 34 1 6.4952 2.0492 -0.2610 35 1 7.3199 1.6737 -2.5159 36 1 7.0880 0.5664 -4.7116 37 1 5.8599 -0.9394 -6.1798 38 1 3.8172 -2.0661 -5.4068 39 1 2.9707 -1.7059 -3.1514 40 1 3.1956 -0.6025 -0.9459 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359440239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:30 Heat of formation + Delta-G solvation = 18.448367 kcal Electronic energy + Delta-G solvation = -22858.191491 eV Core-core repulsion = 19602.688380 eV Total energy + Delta-G solvation = -3255.503111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.70689 -40.38863 -37.40869 -37.14675 -35.17958 -33.76043 -33.70480 -31.54777 -30.49380 -29.25506 -27.10469 -25.75343 -24.39352 -23.75249 -22.95038 -21.37670 -20.44749 -18.75223 -18.54013 -18.12525 -17.85003 -17.18898 -16.53568 -16.17522 -16.06526 -15.84585 -15.24226 -14.89400 -14.65348 -14.46300 -14.35356 -14.17913 -14.06437 -13.84069 -13.35350 -13.07946 -12.96460 -12.85679 -12.61239 -12.32512 -12.25664 -12.18251 -12.14219 -11.76358 -11.66486 -10.96799 -10.77585 -10.66844 -10.36502 -9.65455 -9.51185 -8.83046 -8.25572 -6.40929 -0.53284 -0.08059 1.04627 1.26794 1.34699 1.37897 1.48127 1.60702 2.05742 2.34798 2.44815 3.04086 3.14825 3.48151 3.67185 3.88416 3.97497 4.04977 4.12856 4.15111 4.27180 4.34759 4.37473 4.45872 4.54813 4.76917 4.82411 4.93541 4.95347 5.01665 5.06652 5.17659 5.23369 5.29289 5.40899 5.45719 5.61678 5.62797 5.64973 5.70920 5.82274 5.89322 6.01642 6.07758 6.59208 6.68147 7.18636 7.34361 8.82064 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.004162 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.211090 B = 6725.489311 C = 7504.631872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.193 4.193 3 C 0.128 3.872 4 N -0.588 5.588 5 C 0.264 3.736 6 C -0.549 4.549 7 H 0.052 0.948 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.969 3.031 11 H -0.261 1.261 12 H -0.279 1.279 13 H -0.274 1.274 14 C 0.540 3.460 15 O -0.593 6.593 16 C -0.134 4.134 17 C -0.100 4.100 18 C -0.099 4.099 19 C -0.056 4.056 20 C -0.116 4.116 21 C -0.108 4.108 22 C -0.115 4.115 23 C -0.109 4.109 24 C -0.072 4.072 25 C -0.075 4.075 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.027 0.973 32 H -0.001 1.001 33 H 0.268 0.732 34 H 0.114 0.886 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 -8.208 -24.016 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.212 4.212 3 C 0.006 3.994 4 N -0.316 5.316 5 C 0.143 3.857 6 C -0.587 4.587 7 H 0.070 0.930 8 C -0.189 4.189 9 N -0.565 5.565 10 Si 0.793 3.207 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.198 1.198 14 C 0.330 3.670 15 O -0.475 6.475 16 C -0.137 4.137 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.056 4.056 20 C -0.133 4.133 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.127 4.127 24 C -0.072 4.072 25 C -0.093 4.093 26 H 0.119 0.881 27 H 0.141 0.859 28 H 0.134 0.866 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.045 0.955 32 H 0.017 0.983 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.178 0.822 36 H 0.169 0.831 37 H 0.172 0.828 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.461 -8.226 -23.325 24.855 hybrid contribution 0.080 0.991 1.272 1.615 sum 2.541 -7.235 -22.053 23.348 Atomic orbital electron populations 1.24090 0.95143 1.03254 0.96840 1.23272 0.96940 0.97700 1.03251 1.20958 0.92097 0.96818 0.89554 1.48143 1.07937 1.64556 1.10994 1.18757 0.93923 0.94470 0.78540 1.21681 1.43542 0.93402 1.00083 0.92982 1.25856 0.94314 1.03652 0.95048 1.70053 1.43665 1.37633 1.05158 0.85397 0.78951 0.78865 0.77497 1.18620 1.20384 1.19835 1.19029 0.82145 0.76607 0.89256 1.90704 1.56447 1.54590 1.45794 1.19832 0.98478 1.02484 0.92902 1.20786 0.94502 0.99427 0.97170 1.21168 1.00469 0.97948 0.92061 1.18493 0.94661 0.96800 0.95619 1.21337 1.01058 0.99273 0.91672 1.21330 0.94817 0.95462 1.00945 1.21269 0.96579 0.99636 0.95831 1.21321 1.00146 0.97164 0.94093 1.18233 0.96095 0.99106 0.93748 1.21979 0.98859 0.95931 0.92528 0.88109 0.85865 0.86601 0.90469 0.88245 0.95505 0.98303 0.92264 0.86768 0.82245 0.83111 0.82807 0.82937 0.83771 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 14.32 67.78 0.97 -2.81 16 2 C -0.19 -5.50 8.59 25.65 0.22 -5.28 16 3 C 0.13 4.46 5.34 85.63 0.46 4.92 16 4 N -0.59 -27.23 2.45 -834.02 -2.04 -29.27 16 5 C 0.26 14.93 5.21 85.63 0.45 15.38 16 6 C -0.55 -32.73 9.39 25.60 0.24 -32.49 16 7 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 8 C 0.01 0.63 5.46 84.66 0.46 1.09 16 9 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 10 Si 0.97 45.67 29.54 68.60 2.03 47.70 16 11 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 14 C 0.54 25.61 7.20 86.76 0.62 26.23 16 15 O -0.59 -33.98 16.58 -3.92 -0.06 -34.05 16 16 C -0.13 -4.91 4.95 -20.11 -0.10 -5.01 16 17 C -0.10 -3.30 9.61 22.28 0.21 -3.08 16 18 C -0.10 -2.44 9.73 22.29 0.22 -2.22 16 19 C -0.06 -1.28 5.75 -21.25 -0.12 -1.40 16 20 C -0.12 -1.86 9.76 22.33 0.22 -1.64 16 21 C -0.11 -1.38 9.95 22.05 0.22 -1.16 16 22 C -0.12 -1.55 9.95 22.04 0.22 -1.34 16 23 C -0.11 -1.96 9.77 22.36 0.22 -1.74 16 24 C -0.07 -1.74 5.74 -21.31 -0.12 -1.87 16 25 C -0.07 -2.18 7.23 22.83 0.16 -2.01 16 26 H 0.10 2.44 7.85 -2.91 -0.02 2.42 16 27 H 0.12 2.34 8.06 -2.91 -0.02 2.31 16 28 H 0.12 3.07 6.47 -2.91 -0.02 3.05 16 29 H 0.08 2.78 7.78 -2.39 -0.02 2.76 16 30 H 0.10 3.10 5.30 -2.39 -0.01 3.09 16 31 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 32 H 0.00 -0.07 7.35 -2.39 -0.02 -0.09 16 33 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.11 3.98 8.06 -2.91 -0.02 3.96 16 35 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.15 3.96 4.17 -2.91 -0.01 3.95 16 Total: -1.00 -78.26 340.61 5.80 -72.46 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.04 Total: 14.17 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 4.55 Total: -14.42 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -1.75 Total: -85.86 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -0.06 Total: -34.05 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -78.26 5.80 -72.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359440239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.912 kcal (2) G-P(sol) polarization free energy of solvation -78.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds