Wall clock time and date at job start Tue Mar 31 2020 06:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.37476 * 122.44498 * 2 1 4 4 C 1.36647 * 113.29097 * 180.02562 * 3 2 1 5 5 C 1.46588 * 125.45349 * 180.02562 * 4 3 2 6 6 O 1.21700 * 120.00047 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99641 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99691 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46827 * 179.97438 * 8 7 5 10 10 C 1.52992 * 109.47484 * 299.99919 * 9 8 7 11 11 C 1.52997 * 109.47089 * 60.00481 * 9 8 7 12 12 C 1.53008 * 109.46851 * 180.02562 * 9 8 7 13 13 C 1.50698 * 109.47030 * 180.02562 * 12 9 8 14 14 H 1.07998 * 120.00308 * 0.02562 * 13 12 9 15 15 C 1.37875 * 120.00000 * 179.97438 * 13 12 9 16 16 N 1.31513 * 120.00252 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00331 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47243 * 89.99518 * 17 15 13 19 19 H 1.48494 * 109.47435 * 210.00281 * 17 15 13 20 20 H 1.48501 * 109.46916 * 330.00184 * 17 15 13 21 21 S 1.75825 * 109.08825 * 359.97438 * 4 3 2 22 22 C 1.33815 * 122.44997 * 180.02562 * 2 1 3 23 23 C 1.50694 * 124.52169 * 0.24390 * 22 2 1 24 24 H 1.09002 * 109.46863 * 269.97606 * 1 2 3 25 25 H 1.08996 * 109.47233 * 29.97958 * 1 2 3 26 26 H 1.09000 * 109.46765 * 149.97791 * 1 2 3 27 27 H 1.08003 * 123.35093 * 359.97438 * 3 2 1 28 28 H 0.96996 * 119.99934 * 359.97438 * 7 5 4 29 29 H 1.08998 * 109.47324 * 300.00258 * 8 7 5 30 30 H 1.08997 * 109.46847 * 59.99998 * 8 7 5 31 31 H 1.09003 * 109.47013 * 60.00368 * 10 9 8 32 32 H 1.09007 * 109.47017 * 179.97438 * 10 9 8 33 33 H 1.08997 * 109.47382 * 299.99880 * 10 9 8 34 34 H 1.09000 * 109.47709 * 59.99506 * 11 9 8 35 35 H 1.09007 * 109.47370 * 179.97438 * 11 9 8 36 36 H 1.09003 * 109.47035 * 299.99404 * 11 9 8 37 37 H 1.09000 * 109.46883 * 299.99843 * 12 9 8 38 38 H 1.08997 * 109.46905 * 60.00244 * 12 9 8 39 39 H 0.97001 * 120.00707 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.47026 * 179.71922 * 23 22 2 41 41 H 1.08999 * 109.47790 * 299.72306 * 23 22 2 42 42 H 1.09002 * 109.47337 * 59.72579 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2446 1.1602 0.0000 4 6 3.5937 0.9428 -0.0006 5 6 4.6231 1.9864 -0.0002 6 8 4.3001 3.1597 0.0012 7 7 5.9273 1.6464 -0.0003 8 6 6.9561 2.6894 -0.0004 9 6 8.3412 2.0394 0.0001 10 6 8.4963 1.1704 1.2496 11 6 8.4968 1.1695 -1.2488 12 6 9.4157 3.1287 0.0006 13 6 10.7799 2.4886 0.0005 14 1 10.8715 1.4125 -0.0003 15 6 11.9112 3.2767 0.0003 16 7 11.7998 4.5871 -0.0003 17 14 13.6024 2.4832 -0.0005 18 1 14.0500 2.2733 -1.4008 19 1 14.5658 3.3703 0.6994 20 1 13.5357 1.1750 0.6991 21 16 3.8970 -0.7891 -0.0003 22 6 2.2251 -1.1292 -0.0005 23 6 1.6356 -2.5161 -0.0064 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.8019 2.1453 -0.0004 28 1 6.1847 0.7112 -0.0002 29 1 6.8454 3.3089 -0.8904 30 1 6.8455 3.3089 0.8895 31 1 7.7308 0.3943 1.2497 32 1 9.4829 0.7069 1.2497 33 1 8.3855 1.7901 2.1394 34 1 8.3863 1.7886 -2.1391 35 1 9.4837 0.7067 -1.2487 36 1 7.7313 0.3934 -1.2487 37 1 9.3054 3.7482 -0.8895 38 1 9.3046 3.7481 0.8905 39 1 12.5957 5.1416 0.0000 40 1 2.4393 -3.2524 -0.0106 41 1 1.0213 -2.6537 0.8834 42 1 1.0199 -2.6454 -0.8965 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359756280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:27 Heat of formation + Delta-G solvation = -36.596063 kcal Electronic energy + Delta-G solvation = -21154.777071 eV Core-core repulsion = 18032.331005 eV Total energy + Delta-G solvation = -3122.446066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.76339 -38.53605 -37.02331 -33.65376 -32.52045 -32.00781 -29.92617 -27.41694 -26.85721 -26.52501 -25.44176 -23.69043 -22.51581 -20.53352 -19.13093 -18.24994 -17.70977 -16.46324 -16.11419 -15.55142 -15.27755 -14.66089 -14.53285 -14.40535 -13.87063 -13.61553 -13.36069 -13.14299 -13.10448 -12.87817 -12.76197 -12.28305 -12.09025 -12.04092 -11.97446 -11.87363 -11.16643 -11.05413 -11.02237 -10.85817 -10.64644 -10.42095 -10.26369 -9.99105 -9.89253 -9.20157 -8.93721 -8.93268 -8.72742 -8.54124 -8.36193 -6.00159 -4.01540 0.37161 1.28941 1.69754 2.19033 3.29182 3.30821 3.34203 3.38059 3.40228 4.44933 4.48740 4.73006 4.82955 5.01238 5.10747 5.18334 5.33418 5.35324 5.35995 5.46989 5.53280 5.60723 5.66154 5.72542 5.76898 6.09281 6.15417 6.20746 6.24256 6.28270 6.37427 6.50927 6.61822 6.72322 7.04208 7.06129 7.10786 7.62718 7.65624 7.75636 7.98364 8.30636 8.40550 9.03151 9.61610 11.11314 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.035160 B = 0.002978 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.175195 B = 9398.626144 C = 9987.839077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.125 4.125 3 C -0.053 4.053 4 C -0.258 4.258 5 C 0.583 3.417 6 O -0.534 6.534 7 N -0.716 5.716 8 C 0.128 3.872 9 C -0.073 4.073 10 C -0.128 4.128 11 C -0.128 4.128 12 C 0.036 3.964 13 C -0.511 4.511 14 H 0.060 0.940 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 S 0.197 5.803 22 C -0.204 4.204 23 C -0.081 4.081 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.152 0.848 28 H 0.396 0.604 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.260 0.740 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.768 -14.333 0.006 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C -0.086 4.086 4 C -0.378 4.378 5 C 0.368 3.632 6 O -0.413 6.413 7 N -0.367 5.367 8 C 0.006 3.994 9 C -0.074 4.074 10 C -0.185 4.185 11 C -0.185 4.185 12 C -0.001 4.001 13 C -0.549 4.549 14 H 0.078 0.922 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 S 0.466 5.534 22 C -0.324 4.324 23 C -0.140 4.140 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.170 0.830 28 H 0.231 0.769 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.511 -14.226 0.009 24.147 hybrid contribution -0.135 0.148 -0.006 0.201 sum -19.646 -14.077 0.003 24.169 Atomic orbital electron populations 1.20485 0.89507 1.02762 1.02271 1.18660 0.97801 0.91258 1.06035 1.20610 0.91002 0.99824 0.97185 1.24647 0.98175 0.96924 1.18084 1.16976 0.81905 0.87307 0.77018 1.90822 1.81752 1.18153 1.50576 1.46103 1.05337 1.10980 1.74288 1.21702 0.86258 0.89326 1.02139 1.20923 0.93236 0.98044 0.95161 1.21774 1.01149 0.98288 0.97315 1.21775 1.01143 0.98292 0.97322 1.19091 0.91362 0.92094 0.97564 1.21175 0.90571 0.92883 1.50316 0.92237 1.25012 0.99135 0.94796 0.95546 1.69961 1.29125 1.03464 1.50831 0.86646 0.84423 0.79205 0.78026 1.20773 1.21338 1.19938 1.83034 1.03272 0.98576 1.68544 1.24013 0.98459 1.00256 1.09632 1.20342 1.00824 0.89712 1.03095 0.91236 0.91361 0.91564 0.83039 0.76894 0.91459 0.91463 0.95376 0.91268 0.93237 0.93240 0.91276 0.95362 0.96274 0.96260 0.93023 0.91330 0.90397 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 9.84 36.01 0.35 -0.28 16 2 C -0.12 -1.23 5.78 -106.45 -0.62 -1.85 16 3 C -0.05 -0.64 9.80 -40.43 -0.40 -1.04 16 4 C -0.26 -3.46 6.45 -36.79 -0.24 -3.70 16 5 C 0.58 9.62 7.78 -12.89 -0.10 9.52 16 6 O -0.53 -10.64 16.84 5.19 0.09 -10.55 16 7 N -0.72 -11.24 4.95 -61.65 -0.31 -11.55 16 8 C 0.13 2.33 4.56 -4.04 -0.02 2.31 16 9 C -0.07 -1.40 0.54 -154.51 -0.08 -1.49 16 10 C -0.13 -2.27 8.05 37.15 0.30 -1.97 16 11 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 12 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 13 C -0.51 -13.54 7.65 -34.44 -0.26 -13.80 16 14 H 0.06 1.51 5.68 -52.49 -0.30 1.22 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 16 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 17 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 S 0.20 2.03 22.08 -107.50 -2.37 -0.34 16 22 C -0.20 -1.88 6.28 -35.86 -0.23 -2.11 16 23 C -0.08 -0.50 9.38 36.00 0.34 -0.16 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 26 H 0.07 0.37 7.26 -51.93 -0.38 -0.01 16 27 H 0.15 1.79 8.06 -52.48 -0.42 1.37 16 28 H 0.40 5.44 5.28 -40.82 -0.22 5.22 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 32 H 0.07 1.31 6.62 -51.92 -0.34 0.96 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.30 6.62 -51.92 -0.34 0.96 16 36 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.40 7.88 -51.93 -0.41 -0.01 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -31.16 352.47 -8.91 -40.07 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.48 Total: 0.89 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -0.86 Total: -14.29 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.43 Total: -37.24 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.37 Total: -0.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.16 -8.91 -40.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359756280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.473 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds