Wall clock time and date at job start Tue Mar 31 2020 06:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.37478 * 123.35226 * 265.02351 * 3 2 1 5 5 C 1.33819 * 115.10091 * 179.97438 * 4 3 2 6 6 S 1.70619 * 110.95621 * 0.02562 * 5 4 3 7 7 C 1.36648 * 123.35356 * 84.72514 * 3 2 1 8 8 C 1.46588 * 125.45667 * 0.03973 * 7 3 2 9 9 O 1.21708 * 119.99629 * 359.97438 * 8 7 3 10 10 N 1.34773 * 120.00162 * 179.97438 * 8 7 3 11 11 C 1.46491 * 120.00190 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47455 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46695 * 300.00004 * 12 11 10 14 14 C 1.52994 * 109.46887 * 59.99745 * 12 11 10 15 15 C 1.52997 * 109.47273 * 179.97438 * 12 11 10 16 16 C 1.50703 * 109.47192 * 179.97438 * 15 12 11 17 17 H 1.08004 * 119.99500 * 0.02562 * 16 15 12 18 18 C 1.37879 * 119.99938 * 179.97438 * 16 15 12 19 19 N 1.31515 * 119.99745 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00035 * 0.02562 * 18 16 15 21 21 H 1.48509 * 109.47106 * 89.99965 * 20 18 16 22 22 H 1.48495 * 109.47182 * 209.99804 * 20 18 16 23 23 H 1.48499 * 109.47421 * 329.99995 * 20 18 16 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 27 27 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 29 29 H 1.08003 * 122.44710 * 359.94559 * 4 3 2 30 30 H 1.08000 * 124.51764 * 179.97438 * 5 4 3 31 31 H 0.96999 * 119.99662 * 359.97438 * 10 8 7 32 32 H 1.09008 * 109.47085 * 300.00206 * 11 10 8 33 33 H 1.09001 * 109.47291 * 60.00057 * 11 10 8 34 34 H 1.08997 * 109.47290 * 59.99625 * 13 12 11 35 35 H 1.09002 * 109.46743 * 180.02562 * 13 12 11 36 36 H 1.09001 * 109.47054 * 299.99627 * 13 12 11 37 37 H 1.08996 * 109.47482 * 60.00561 * 14 12 11 38 38 H 1.09002 * 109.46862 * 180.02562 * 14 12 11 39 39 H 1.09000 * 109.47451 * 300.00018 * 14 12 11 40 40 H 1.08998 * 109.47329 * 300.00031 * 15 12 11 41 41 H 1.09001 * 109.47292 * 59.99874 * 15 12 11 42 42 H 0.96995 * 120.00065 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3782 2.1002 -1.1440 5 6 2.8033 3.3546 -0.9528 6 16 2.7924 3.7564 0.7054 7 6 2.1838 2.1641 1.1366 8 6 1.8895 1.7062 2.4976 9 8 1.4728 0.5778 2.6832 10 7 2.0804 2.5346 3.5434 11 6 1.7858 2.0771 4.9035 12 6 2.0860 3.2020 5.8963 13 6 3.5630 3.5889 5.7971 14 6 1.2171 4.4176 5.5676 15 6 1.7777 2.7244 7.3167 16 6 2.0740 3.8321 8.2946 17 1 2.4448 4.7819 7.9384 18 6 1.8708 3.6333 9.6438 19 7 2.1290 4.6002 10.4971 20 14 1.2289 1.9908 10.2596 21 1 2.3731 1.0904 10.5522 22 1 0.4360 2.2017 11.4973 23 1 0.3675 1.3742 9.2189 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.3120 1.6540 -2.1254 30 1 3.1129 4.0230 -1.7426 31 1 2.4129 3.4337 3.3955 32 1 0.7334 1.8018 4.9743 33 1 2.4045 1.2108 5.1376 34 1 3.7822 3.9292 4.7851 35 1 3.7770 4.3900 6.5047 36 1 4.1820 2.7228 6.0312 37 1 0.1650 4.1420 5.6383 38 1 1.4314 5.2191 6.2746 39 1 1.4364 4.7580 4.5556 40 1 0.7254 2.4489 7.3871 41 1 2.3964 1.8581 7.5512 42 1 1.9857 4.4605 11.4462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359772452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:03 Heat of formation + Delta-G solvation = -29.707365 kcal Electronic energy + Delta-G solvation = -21605.414008 eV Core-core repulsion = 18483.266659 eV Total energy + Delta-G solvation = -3122.147349 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.97088 -38.34343 -37.00664 -33.74664 -32.83763 -32.13481 -29.71204 -27.81484 -26.57458 -26.51032 -25.08732 -22.68900 -22.48334 -21.03701 -19.36278 -18.26735 -17.79502 -16.86748 -16.00390 -15.73882 -15.27692 -14.92815 -14.22232 -14.13813 -14.09754 -13.62165 -13.57126 -13.39971 -13.09736 -12.74817 -12.50991 -12.32342 -12.26671 -12.04678 -11.62465 -11.26929 -11.16816 -11.13285 -11.01242 -10.84735 -10.62718 -10.50758 -9.98794 -9.91591 -9.74954 -9.48397 -9.10806 -9.00538 -8.76459 -8.66145 -8.53924 -6.04685 -4.02026 0.35351 1.29711 1.68866 2.21093 3.22844 3.30174 3.31534 3.39582 3.43474 4.45369 4.60228 4.78275 4.96534 5.03261 5.22506 5.27824 5.36266 5.36788 5.50787 5.53371 5.61709 5.63908 5.82135 5.92955 6.08857 6.09501 6.09743 6.16062 6.24839 6.29659 6.35854 6.46085 6.58091 6.65754 6.88173 7.00164 7.03574 7.18822 7.35445 7.58722 7.78299 8.26480 8.52372 8.99275 9.57980 11.08052 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.026386 B = 0.003518 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.919648 B = 7956.838796 C = 8738.290567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 C -0.023 4.023 4 C -0.146 4.146 5 C -0.232 4.232 6 S 0.195 5.805 7 C -0.264 4.264 8 C 0.584 3.416 9 O -0.528 6.528 10 N -0.717 5.717 11 C 0.127 3.873 12 C -0.064 4.064 13 C -0.130 4.130 14 C -0.130 4.130 15 C -0.001 4.001 16 C -0.511 4.511 17 H 0.078 0.922 18 C 0.067 3.933 19 N -0.904 5.904 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.265 1.265 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.143 0.857 30 H 0.168 0.832 31 H 0.396 0.604 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.030 0.970 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 -3.171 -23.969 24.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 C -0.038 4.038 4 C -0.178 4.178 5 C -0.369 4.369 6 S 0.463 5.537 7 C -0.385 4.385 8 C 0.370 3.630 9 O -0.408 6.408 10 N -0.368 5.368 11 C 0.004 3.996 12 C -0.064 4.064 13 C -0.187 4.187 14 C -0.187 4.187 15 C -0.039 4.039 16 C -0.549 4.549 17 H 0.096 0.904 18 C -0.134 4.134 19 N -0.543 5.543 20 Si 0.702 3.298 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.161 0.839 30 H 0.185 0.815 31 H 0.232 0.768 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.871 -2.577 -22.786 22.948 hybrid contribution -0.446 -1.496 -0.588 1.668 sum 0.425 -4.073 -23.374 23.730 Atomic orbital electron populations 1.21603 0.94304 1.01753 1.01768 1.20407 0.96532 0.90574 1.03527 1.19527 0.96353 0.97500 0.90428 1.19916 1.03998 0.94207 0.99642 1.25238 1.08425 1.01390 1.01883 1.83121 1.59932 1.11862 0.98737 1.24560 1.16513 0.99514 0.97883 1.16935 0.78187 0.85190 0.82729 1.90784 1.46048 1.18872 1.85048 1.46069 1.66945 1.16616 1.07202 1.21688 1.00927 0.97894 0.79060 1.20708 0.95845 0.93798 0.96080 1.21789 0.95141 1.02265 0.99507 1.21783 0.99094 0.98629 0.99171 1.19587 0.96525 0.97158 0.90647 1.21077 1.43818 0.99684 0.90324 0.90380 1.24996 0.95060 0.96358 0.97000 1.69899 1.49394 1.32444 1.02548 0.86859 0.79545 0.84908 0.78466 1.20365 1.21504 1.18980 0.92372 0.92082 0.93357 0.88651 0.91471 0.83936 0.81478 0.76802 0.91529 0.91531 0.95113 0.90736 0.93302 0.93294 0.90739 0.95118 0.96313 0.96766 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.77 37.16 0.36 -1.10 16 2 C -0.07 -0.79 5.50 -27.88 -0.15 -0.94 16 3 C -0.02 -0.26 5.16 -105.47 -0.54 -0.81 16 4 C -0.15 -1.34 9.96 -41.41 -0.41 -1.75 16 5 C -0.23 -1.93 10.92 29.18 0.32 -1.61 16 6 S 0.19 1.88 22.16 -107.50 -2.38 -0.50 16 7 C -0.26 -3.34 6.45 -36.79 -0.24 -3.58 16 8 C 0.58 8.88 7.78 -12.89 -0.10 8.78 16 9 O -0.53 -9.34 13.69 5.18 0.07 -9.27 16 10 N -0.72 -10.51 4.95 -61.65 -0.31 -10.82 16 11 C 0.13 2.13 4.56 -4.04 -0.02 2.11 16 12 C -0.06 -1.17 0.54 -154.51 -0.08 -1.25 16 13 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 14 C -0.13 -2.25 8.05 37.15 0.30 -1.95 16 15 C 0.00 -0.03 3.11 -27.88 -0.09 -0.12 16 16 C -0.51 -13.60 8.20 -34.44 -0.28 -13.88 16 17 H 0.08 2.19 5.92 -52.48 -0.31 1.88 16 18 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 19 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 20 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.79 7.57 -51.93 -0.39 0.40 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.10 1.26 6.34 -51.93 -0.33 0.93 16 28 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 29 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 30 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.40 5.16 5.28 -40.82 -0.22 4.94 16 32 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 35 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 39 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 40 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 41 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -30.39 344.75 -8.44 -38.83 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.39 Total: 2.40 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -0.74 Total: -16.24 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.47 Total: -37.16 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.38 Total: -0.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.39 -8.44 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359772452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.121 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds