Wall clock time and date at job start Tue Mar 31 2020 06:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.37478 * 123.35226 * 265.02351 * 3 2 1 5 5 C 1.33819 * 115.10091 * 179.97438 * 4 3 2 6 6 S 1.70619 * 110.95621 * 0.02562 * 5 4 3 7 7 C 1.36648 * 123.35356 * 84.72514 * 3 2 1 8 8 C 1.46588 * 125.45667 * 0.03973 * 7 3 2 9 9 O 1.21708 * 119.99629 * 359.97438 * 8 7 3 10 10 N 1.34773 * 120.00162 * 179.97438 * 8 7 3 11 11 C 1.46491 * 120.00190 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47455 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46695 * 300.00004 * 12 11 10 14 14 C 1.52994 * 109.46887 * 59.99745 * 12 11 10 15 15 C 1.52997 * 109.47273 * 179.97438 * 12 11 10 16 16 C 1.50703 * 109.47192 * 179.97438 * 15 12 11 17 17 H 1.08004 * 119.99500 * 0.02562 * 16 15 12 18 18 C 1.37879 * 119.99938 * 179.97438 * 16 15 12 19 19 N 1.31515 * 119.99745 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00035 * 0.02562 * 18 16 15 21 21 H 1.48509 * 109.47106 * 89.99965 * 20 18 16 22 22 H 1.48495 * 109.47182 * 209.99804 * 20 18 16 23 23 H 1.48499 * 109.47421 * 329.99995 * 20 18 16 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 27 27 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 29 29 H 1.08003 * 122.44710 * 359.94559 * 4 3 2 30 30 H 1.08000 * 124.51764 * 179.97438 * 5 4 3 31 31 H 0.96999 * 119.99662 * 359.97438 * 10 8 7 32 32 H 1.09008 * 109.47085 * 300.00206 * 11 10 8 33 33 H 1.09001 * 109.47291 * 60.00057 * 11 10 8 34 34 H 1.08997 * 109.47290 * 59.99625 * 13 12 11 35 35 H 1.09002 * 109.46743 * 180.02562 * 13 12 11 36 36 H 1.09001 * 109.47054 * 299.99627 * 13 12 11 37 37 H 1.08996 * 109.47482 * 60.00561 * 14 12 11 38 38 H 1.09002 * 109.46862 * 180.02562 * 14 12 11 39 39 H 1.09000 * 109.47451 * 300.00018 * 14 12 11 40 40 H 1.08998 * 109.47329 * 300.00031 * 15 12 11 41 41 H 1.09001 * 109.47292 * 59.99874 * 15 12 11 42 42 H 0.96995 * 120.00065 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3782 2.1002 -1.1440 5 6 2.8033 3.3546 -0.9528 6 16 2.7924 3.7564 0.7054 7 6 2.1838 2.1641 1.1366 8 6 1.8895 1.7062 2.4976 9 8 1.4728 0.5778 2.6832 10 7 2.0804 2.5346 3.5434 11 6 1.7858 2.0771 4.9035 12 6 2.0860 3.2020 5.8963 13 6 3.5630 3.5889 5.7971 14 6 1.2171 4.4176 5.5676 15 6 1.7777 2.7244 7.3167 16 6 2.0740 3.8321 8.2946 17 1 2.4448 4.7819 7.9384 18 6 1.8708 3.6333 9.6438 19 7 2.1290 4.6002 10.4971 20 14 1.2289 1.9908 10.2596 21 1 2.3731 1.0904 10.5522 22 1 0.4360 2.2017 11.4973 23 1 0.3675 1.3742 9.2189 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.3120 1.6540 -2.1254 30 1 3.1129 4.0230 -1.7426 31 1 2.4129 3.4337 3.3955 32 1 0.7334 1.8018 4.9743 33 1 2.4045 1.2108 5.1376 34 1 3.7822 3.9292 4.7851 35 1 3.7770 4.3900 6.5047 36 1 4.1820 2.7228 6.0312 37 1 0.1650 4.1420 5.6383 38 1 1.4314 5.2191 6.2746 39 1 1.4364 4.7580 4.5556 40 1 0.7254 2.4489 7.3871 41 1 2.3964 1.8581 7.5512 42 1 1.9857 4.4605 11.4462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359772452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:02 Heat of formation + Delta-G solvation = -47.335278 kcal Electronic energy + Delta-G solvation = -21606.178412 eV Core-core repulsion = 18483.266659 eV Total energy + Delta-G solvation = -3122.911753 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.08937 -39.38110 -38.31988 -35.25982 -34.06310 -33.62250 -30.71843 -29.62132 -28.02303 -27.72325 -26.09416 -24.39408 -23.29428 -22.22282 -20.53218 -19.22931 -19.07186 -18.88476 -16.96140 -16.89525 -16.49536 -16.22540 -15.75501 -15.34890 -15.29228 -15.00110 -14.66065 -14.55194 -14.22120 -14.19062 -14.02001 -13.72939 -13.25718 -12.94930 -12.85404 -12.83471 -12.63737 -12.40310 -12.32168 -12.18562 -12.00781 -11.77590 -11.64676 -11.53834 -11.28877 -10.95402 -10.87458 -10.70461 -10.20983 -9.71586 -9.39722 -8.22368 -6.22531 -0.45911 0.52881 0.96391 1.36047 1.38882 1.43055 1.48831 2.14752 2.16986 2.39184 3.13113 3.77634 3.90936 3.92205 4.02658 4.12636 4.18623 4.33491 4.48454 4.53968 4.60717 4.67527 4.74139 4.77434 4.90278 4.90997 4.99023 5.06680 5.08883 5.11595 5.26880 5.28184 5.34002 5.38897 5.39905 5.46851 5.53457 5.54961 5.66372 5.75257 6.37640 6.46333 6.84144 7.13200 7.40224 8.93226 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.026386 B = 0.003518 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.919648 B = 7956.838796 C = 8738.290567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.022 4.022 4 C -0.157 4.157 5 C -0.212 4.212 6 S 0.215 5.785 7 C -0.306 4.306 8 C 0.582 3.418 9 O -0.562 6.562 10 N -0.712 5.712 11 C 0.140 3.860 12 C -0.059 4.059 13 C -0.125 4.125 14 C -0.125 4.125 15 C -0.002 4.002 16 C -0.502 4.502 17 H 0.053 0.947 18 C 0.007 3.993 19 N -0.951 5.951 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.252 1.252 24 H 0.065 0.935 25 H 0.031 0.969 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.169 0.831 30 H 0.201 0.799 31 H 0.405 0.595 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.016 0.984 41 H 0.014 0.986 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.949 -3.557 -27.232 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.112 4.112 3 C -0.038 4.038 4 C -0.187 4.187 5 C -0.350 4.350 6 S 0.483 5.517 7 C -0.426 4.426 8 C 0.370 3.630 9 O -0.444 6.444 10 N -0.364 5.364 11 C 0.016 3.984 12 C -0.060 4.060 13 C -0.182 4.182 14 C -0.182 4.182 15 C -0.040 4.040 16 C -0.540 4.540 17 H 0.071 0.929 18 C -0.190 4.190 19 N -0.592 5.592 20 Si 0.759 3.241 21 H -0.197 1.197 22 H -0.215 1.215 23 H -0.176 1.176 24 H 0.084 0.916 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.187 0.813 30 H 0.218 0.782 31 H 0.242 0.758 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.055 -2.949 -26.073 26.260 hybrid contribution -0.459 -1.297 0.298 1.408 sum 0.596 -4.247 -25.774 26.129 Atomic orbital electron populations 1.21553 0.94210 1.02087 1.01092 1.20406 0.96606 0.90806 1.03371 1.19800 0.95438 0.97528 0.91037 1.20118 1.04213 0.94473 0.99911 1.25697 1.06065 1.01418 1.01813 1.83018 1.59182 1.09649 0.99802 1.24393 1.19645 1.01896 0.96684 1.17311 0.77289 0.84660 0.83736 1.90762 1.47541 1.20274 1.85774 1.45895 1.67160 1.17063 1.06261 1.21339 1.00304 0.96815 0.79921 1.20575 0.96731 0.94623 0.94043 1.21715 0.94330 1.01331 1.00828 1.21710 0.98747 0.97318 1.00415 1.19552 0.96180 0.95759 0.92502 1.21361 1.41909 0.99771 0.90996 0.92914 1.25818 0.95881 0.99748 0.97530 1.70037 1.51652 1.34689 1.02864 0.85903 0.79266 0.80864 0.78084 1.19700 1.21461 1.17570 0.91615 0.94948 0.91654 0.91434 0.88914 0.81322 0.78167 0.75772 0.92319 0.92219 0.91794 0.93250 0.93459 0.93505 0.93241 0.91801 0.96602 0.96744 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.77 71.98 0.70 -1.99 16 2 C -0.07 -1.51 5.50 29.85 0.16 -1.35 16 3 C -0.02 -0.46 5.16 -20.42 -0.11 -0.56 16 4 C -0.16 -2.29 9.96 21.09 0.21 -2.08 16 5 C -0.21 -2.63 10.92 66.81 0.73 -1.90 16 6 S 0.21 3.52 22.16 -56.49 -1.25 2.27 16 7 C -0.31 -7.29 6.45 24.08 0.16 -7.13 16 8 C 0.58 17.43 7.78 86.42 0.67 18.10 16 9 O -0.56 -20.18 13.69 -4.37 -0.06 -20.24 16 10 N -0.71 -20.10 4.95 -467.17 -2.31 -22.41 16 11 C 0.14 4.62 4.56 86.38 0.39 5.01 16 12 C -0.06 -2.14 0.54 -52.18 -0.03 -2.17 16 13 C -0.12 -4.24 8.05 71.98 0.58 -3.66 16 14 C -0.12 -4.25 8.05 71.98 0.58 -3.67 16 15 C 0.00 -0.09 3.11 29.85 0.09 0.00 16 16 C -0.50 -27.29 8.20 25.60 0.21 -27.08 16 17 H 0.05 3.08 5.92 -2.91 -0.02 3.06 16 18 C 0.01 0.37 5.47 84.66 0.46 0.84 16 19 N -0.95 -58.64 13.96 21.45 0.30 -58.34 16 20 Si 0.93 44.48 27.47 68.60 1.88 46.36 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 23 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.03 0.83 7.57 -2.39 -0.02 0.82 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.81 6.34 -2.39 -0.02 1.79 16 28 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 29 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.41 9.76 5.28 -92.71 -0.49 9.27 16 32 H 0.06 2.03 8.14 -2.38 -0.02 2.02 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.72 6.86 -2.39 -0.02 1.70 16 35 H 0.05 1.93 6.62 -2.39 -0.02 1.91 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 39 H 0.06 1.72 6.86 -2.39 -0.02 1.71 16 40 H 0.02 0.72 7.20 -2.39 -0.02 0.70 16 41 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 42 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -67.85 344.75 3.85 -64.00 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.47 Total: 16.01 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 4.82 Total: -27.64 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -2.01 Total: -80.76 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.06 Total: -20.24 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.25 Total: 2.27 kcal Total: -67.85 3.85 -64.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359772452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.667 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds