Wall clock time and date at job start Tue Mar 31 2020 07:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81390 * 103.00126 * 2 1 4 4 C 1.53000 * 109.47396 * 60.00211 * 3 2 1 5 5 C 1.52996 * 109.47352 * 299.99853 * 3 2 1 6 6 C 1.53009 * 109.47010 * 180.02562 * 3 2 1 7 7 C 1.52996 * 109.47030 * 295.00099 * 6 3 2 8 8 N 1.46495 * 109.47100 * 180.02562 * 7 6 3 9 9 C 1.39676 * 120.00065 * 180.02562 * 8 7 6 10 10 C 1.38998 * 120.04105 * 359.97246 * 9 8 7 11 11 C 1.38152 * 120.06618 * 180.02562 * 10 9 8 12 12 C 1.38174 * 120.14008 * 359.72675 * 11 10 9 13 13 C 1.38921 * 120.07677 * 0.55429 * 12 11 10 14 14 O 1.35751 * 120.02898 * 179.72009 * 13 12 11 15 15 C 1.34829 * 116.99660 * 174.18611 * 14 13 12 16 16 H 1.08001 * 120.00139 * 5.05352 * 15 14 13 17 17 C 1.38657 * 119.99856 * 185.05736 * 15 14 13 18 18 N 1.31559 * 119.99982 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00027 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46813 * 90.00246 * 19 17 15 21 21 H 1.48495 * 109.47176 * 210.00133 * 19 17 15 22 22 H 1.48499 * 109.47156 * 330.00610 * 19 17 15 23 23 C 1.38756 * 120.03808 * 179.97438 * 9 8 7 24 24 H 1.09003 * 109.46820 * 300.00426 * 1 2 3 25 25 H 1.08999 * 109.46839 * 59.99391 * 1 2 3 26 26 H 1.08991 * 109.47661 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47438 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46921 * 299.99769 * 4 3 2 29 29 H 1.09003 * 109.47124 * 59.99695 * 4 3 2 30 30 H 1.09002 * 109.47224 * 300.00063 * 5 3 2 31 31 H 1.09000 * 109.47004 * 60.00207 * 5 3 2 32 32 H 1.09007 * 109.47210 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.47117 * 175.00157 * 6 3 2 34 34 H 1.08996 * 109.47150 * 55.00074 * 6 3 2 35 35 H 1.09002 * 109.47123 * 60.00061 * 7 6 3 36 36 H 1.09010 * 109.47355 * 299.99837 * 7 6 3 37 37 H 0.96996 * 120.00233 * 359.97438 * 8 7 6 38 38 H 1.08000 * 119.96982 * 0.02562 * 10 9 8 39 39 H 1.07995 * 119.93052 * 179.97438 * 11 10 9 40 40 H 1.07994 * 119.96332 * 180.29346 * 12 11 10 41 41 H 0.96998 * 119.99940 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.07467 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 1.6341 2.4266 1.2492 5 6 1.6341 2.4266 -1.2492 6 6 3.7424 1.9398 -0.0006 7 6 4.3184 1.3914 1.3064 8 7 5.7740 1.5570 1.3060 9 6 6.5260 1.1272 2.4018 10 6 5.8942 0.5427 3.4932 11 6 6.6375 0.1179 4.5775 12 6 8.0111 0.2673 4.5783 13 6 8.6481 0.8559 3.4931 14 8 9.9971 1.0073 3.4975 15 6 10.5642 1.4741 2.3668 16 1 9.9432 1.7859 1.5401 17 6 11.9448 1.5537 2.2654 18 7 12.4982 2.0096 1.1624 19 14 13.0189 1.0149 3.6956 20 1 13.3406 -0.4283 3.5568 21 1 14.2765 1.8045 3.6951 22 1 12.2936 1.2398 4.9717 23 6 7.9048 1.2831 2.4020 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0275 -0.0005 27 1 1.8797 3.4886 1.2495 28 1 0.5511 2.3039 1.2492 29 1 2.0531 1.9570 2.1392 30 1 2.0531 1.9570 -2.1392 31 1 0.5511 2.3038 -1.2492 32 1 1.8790 3.4888 -1.2490 33 1 3.9881 2.9980 -0.0902 34 1 4.1695 1.3951 -0.8427 35 1 4.0728 0.3332 1.3959 36 1 3.8914 1.9361 2.1485 37 1 6.2156 1.9644 0.5446 38 1 4.8211 0.4206 3.4937 39 1 6.1442 -0.3355 5.4245 40 1 8.5898 -0.0701 5.4254 41 1 13.4640 2.0657 1.0917 42 1 8.3983 1.7365 1.5552 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385201002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:27 Heat of formation + Delta-G solvation = -10.664295 kcal Electronic energy + Delta-G solvation = -20962.937035 eV Core-core repulsion = 17841.615455 eV Total energy + Delta-G solvation = -3121.321580 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.17841 -37.88806 -36.65538 -34.35787 -32.26325 -30.62207 -29.21179 -28.72859 -27.85284 -27.13800 -25.10671 -23.43593 -21.72702 -20.71262 -20.33865 -17.80013 -17.50502 -16.50299 -15.74084 -15.47548 -15.23688 -15.06485 -14.54999 -14.28423 -14.10580 -14.03586 -13.66905 -13.59805 -13.19710 -13.10343 -12.91433 -12.46092 -12.39637 -12.16122 -12.10038 -11.98570 -11.71755 -11.37375 -11.24876 -11.02132 -10.81742 -10.73962 -10.53010 -10.15144 -9.95719 -9.37746 -9.35196 -8.76041 -7.91052 -7.40330 -6.78040 -6.34076 -4.00590 1.40294 2.27605 2.35694 2.53322 3.27532 3.31324 3.46670 3.71282 4.30817 4.31177 4.41743 4.68831 4.70805 4.78666 4.85957 4.99957 5.01744 5.08165 5.18592 5.20581 5.28601 5.36797 5.40078 5.41851 5.58685 5.68181 5.71170 5.77007 5.95790 5.99909 6.01290 6.20303 6.37471 6.57717 6.63154 7.02827 7.28402 7.34591 7.58491 7.86803 7.98312 8.11880 8.25259 9.02325 9.67551 10.74013 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.027904 B = 0.002899 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.193020 B = 9656.450901 C =10257.845832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.245 6.245 3 C -0.025 4.025 4 C -0.149 4.149 5 C -0.143 4.143 6 C -0.108 4.108 7 C 0.128 3.872 8 N -0.754 5.754 9 C 0.249 3.751 10 C -0.271 4.271 11 C -0.041 4.041 12 C -0.238 4.238 13 C 0.196 3.804 14 O -0.219 6.219 15 C -0.385 4.385 16 H 0.105 0.895 17 C 0.061 3.939 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.291 4.291 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.395 0.605 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.278 0.722 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.926 -0.028 -2.462 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.018 6.018 3 C -0.135 4.135 4 C -0.208 4.208 5 C -0.202 4.202 6 C -0.147 4.147 7 C 0.003 3.997 8 N -0.386 5.386 9 C 0.148 3.852 10 C -0.294 4.294 11 C -0.060 4.060 12 C -0.259 4.259 13 C 0.143 3.857 14 O -0.124 6.124 15 C -0.461 4.461 16 H 0.122 0.878 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.183 1.183 23 C -0.315 4.315 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.229 0.771 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.068 -0.946 -2.362 23.208 hybrid contribution -0.207 1.029 -0.028 1.050 sum -23.275 0.083 -2.390 23.398 Atomic orbital electron populations 1.23458 0.95155 1.06263 1.04747 1.87107 1.06416 1.10491 1.97778 1.22634 0.98574 0.93431 0.98886 1.22230 1.00564 1.01204 0.96801 1.22123 1.00647 1.01026 0.96435 1.21651 0.91375 1.02579 0.99130 1.21341 0.81023 1.00826 0.96477 1.44531 1.04983 1.69338 1.19701 1.17474 0.89940 0.91209 0.86617 1.20149 0.98583 1.14323 0.96296 1.20374 0.92700 0.96411 0.96513 1.20025 0.94194 1.11771 0.99909 1.18795 0.83395 0.90934 0.92605 1.83581 1.16119 1.74634 1.38072 1.20755 0.91539 1.41849 0.91961 0.87757 1.24458 0.95986 0.96149 0.97499 1.69650 1.11982 1.44830 1.25829 0.86190 0.79101 0.78837 0.82831 1.19944 1.20924 1.18328 1.20616 0.91859 1.16118 1.02875 0.90495 0.90648 0.88289 0.91399 0.92533 0.90656 0.91237 0.92432 0.91467 0.89939 0.90314 0.91610 0.92348 0.77101 0.87629 0.87063 0.86975 0.91209 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 9.87 101.05 1.00 0.16 16 2 S -0.24 -2.36 20.10 -107.50 -2.16 -4.52 16 3 C -0.02 -0.21 0.70 -90.62 -0.06 -0.27 16 4 C -0.15 -1.12 7.83 37.16 0.29 -0.83 16 5 C -0.14 -0.98 8.32 37.16 0.31 -0.67 16 6 C -0.11 -1.04 4.38 -26.73 -0.12 -1.16 16 7 C 0.13 1.57 4.25 -4.05 -0.02 1.55 16 8 N -0.75 -11.60 5.73 -58.65 -0.34 -11.94 16 9 C 0.25 4.76 6.65 -83.81 -0.56 4.20 16 10 C -0.27 -4.85 9.31 -39.33 -0.37 -5.22 16 11 C -0.04 -0.74 10.03 -39.64 -0.40 -1.14 16 12 C -0.24 -5.00 9.99 -39.35 -0.39 -5.39 16 13 C 0.20 4.72 6.64 -39.13 -0.26 4.46 16 14 O -0.22 -5.98 8.58 0.05 0.00 -5.98 16 15 C -0.39 -11.13 9.95 30.89 0.31 -10.83 16 16 H 0.11 3.08 5.43 -52.49 -0.29 2.80 16 17 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 18 N -0.88 -26.02 13.96 55.48 0.77 -25.25 16 19 Si 0.90 22.19 28.62 -169.99 -4.86 17.32 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.29 -6.54 9.01 -39.20 -0.35 -6.90 16 24 H 0.08 0.45 7.00 -51.92 -0.36 0.08 16 25 H 0.07 0.42 6.99 -51.92 -0.36 0.06 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.37 6.68 -51.93 -0.35 0.02 16 29 H 0.07 0.63 6.35 -51.93 -0.33 0.30 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.35 6.68 -51.93 -0.35 0.00 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.88 6.94 -51.93 -0.36 0.52 16 36 H 0.06 0.70 6.15 -51.92 -0.32 0.38 16 37 H 0.40 5.74 8.48 -40.82 -0.35 5.39 16 38 H 0.11 1.65 6.73 -52.49 -0.35 1.30 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.11 2.21 8.06 -52.49 -0.42 1.78 16 41 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.13 3.06 5.64 -52.49 -0.30 2.76 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -30.85 347.09 -8.30 -39.15 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.23 Total: 6.33 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -0.72 Total: -20.35 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.44 Total: -37.18 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: 0.00 Total: -5.98 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.86 Total: 17.32 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -2.16 Total: -4.52 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.85 -8.30 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385201002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.485 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds