Wall clock time and date at job start Tue Mar 31 2020 07:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81390 * 103.00126 * 2 1 4 4 C 1.53000 * 109.47396 * 60.00211 * 3 2 1 5 5 C 1.52996 * 109.47352 * 299.99853 * 3 2 1 6 6 C 1.53009 * 109.47010 * 180.02562 * 3 2 1 7 7 C 1.52996 * 109.47030 * 295.00099 * 6 3 2 8 8 N 1.46495 * 109.47100 * 180.02562 * 7 6 3 9 9 C 1.39676 * 120.00065 * 180.02562 * 8 7 6 10 10 C 1.38998 * 120.04105 * 359.97246 * 9 8 7 11 11 C 1.38152 * 120.06618 * 180.02562 * 10 9 8 12 12 C 1.38174 * 120.14008 * 359.72675 * 11 10 9 13 13 C 1.38921 * 120.07677 * 0.55429 * 12 11 10 14 14 O 1.35751 * 120.02898 * 179.72009 * 13 12 11 15 15 C 1.34829 * 116.99660 * 174.18611 * 14 13 12 16 16 H 1.08001 * 120.00139 * 5.05352 * 15 14 13 17 17 C 1.38657 * 119.99856 * 185.05736 * 15 14 13 18 18 N 1.31559 * 119.99982 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00027 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46813 * 90.00246 * 19 17 15 21 21 H 1.48495 * 109.47176 * 210.00133 * 19 17 15 22 22 H 1.48499 * 109.47156 * 330.00610 * 19 17 15 23 23 C 1.38756 * 120.03808 * 179.97438 * 9 8 7 24 24 H 1.09003 * 109.46820 * 300.00426 * 1 2 3 25 25 H 1.08999 * 109.46839 * 59.99391 * 1 2 3 26 26 H 1.08991 * 109.47661 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47438 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46921 * 299.99769 * 4 3 2 29 29 H 1.09003 * 109.47124 * 59.99695 * 4 3 2 30 30 H 1.09002 * 109.47224 * 300.00063 * 5 3 2 31 31 H 1.09000 * 109.47004 * 60.00207 * 5 3 2 32 32 H 1.09007 * 109.47210 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.47117 * 175.00157 * 6 3 2 34 34 H 1.08996 * 109.47150 * 55.00074 * 6 3 2 35 35 H 1.09002 * 109.47123 * 60.00061 * 7 6 3 36 36 H 1.09010 * 109.47355 * 299.99837 * 7 6 3 37 37 H 0.96996 * 120.00233 * 359.97438 * 8 7 6 38 38 H 1.08000 * 119.96982 * 0.02562 * 10 9 8 39 39 H 1.07995 * 119.93052 * 179.97438 * 11 10 9 40 40 H 1.07994 * 119.96332 * 180.29346 * 12 11 10 41 41 H 0.96998 * 119.99940 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.07467 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 1.6341 2.4266 1.2492 5 6 1.6341 2.4266 -1.2492 6 6 3.7424 1.9398 -0.0006 7 6 4.3184 1.3914 1.3064 8 7 5.7740 1.5570 1.3060 9 6 6.5260 1.1272 2.4018 10 6 5.8942 0.5427 3.4932 11 6 6.6375 0.1179 4.5775 12 6 8.0111 0.2673 4.5783 13 6 8.6481 0.8559 3.4931 14 8 9.9971 1.0073 3.4975 15 6 10.5642 1.4741 2.3668 16 1 9.9432 1.7859 1.5401 17 6 11.9448 1.5537 2.2654 18 7 12.4982 2.0096 1.1624 19 14 13.0189 1.0149 3.6956 20 1 13.3406 -0.4283 3.5568 21 1 14.2765 1.8045 3.6951 22 1 12.2936 1.2398 4.9717 23 6 7.9048 1.2831 2.4020 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0275 -0.0005 27 1 1.8797 3.4886 1.2495 28 1 0.5511 2.3039 1.2492 29 1 2.0531 1.9570 2.1392 30 1 2.0531 1.9570 -2.1392 31 1 0.5511 2.3038 -1.2492 32 1 1.8790 3.4888 -1.2490 33 1 3.9881 2.9980 -0.0902 34 1 4.1695 1.3951 -0.8427 35 1 4.0728 0.3332 1.3959 36 1 3.8914 1.9361 2.1485 37 1 6.2156 1.9644 0.5446 38 1 4.8211 0.4206 3.4937 39 1 6.1442 -0.3355 5.4245 40 1 8.5898 -0.0701 5.4254 41 1 13.4640 2.0657 1.0917 42 1 8.3983 1.7365 1.5552 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385201002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:26 Heat of formation + Delta-G solvation = -28.532694 kcal Electronic energy + Delta-G solvation = -20963.711867 eV Core-core repulsion = 17841.615455 eV Total energy + Delta-G solvation = -3122.096412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.87288 -39.15949 -37.93312 -35.65408 -34.36827 -31.77261 -30.61497 -29.69933 -28.57563 -28.17556 -27.10456 -24.49939 -23.33105 -21.98011 -21.41763 -19.78464 -19.14961 -17.49023 -17.02740 -16.81331 -16.44669 -16.21199 -15.87512 -15.66210 -15.42359 -15.22714 -14.98108 -14.60245 -14.54791 -14.20578 -14.06736 -13.78439 -13.64132 -13.42796 -13.05285 -12.85721 -12.73001 -12.57602 -12.53818 -12.27987 -12.14250 -12.03665 -11.84375 -11.79580 -11.36789 -10.98531 -10.68856 -10.55609 -9.17379 -8.64117 -8.48093 -8.24887 -6.20449 0.73743 0.77130 0.88719 1.32068 1.37186 1.53663 1.68099 2.30065 2.49778 2.83212 3.15208 3.26791 3.61598 3.71382 3.99154 4.20879 4.22225 4.27097 4.33209 4.38396 4.40190 4.57390 4.59487 4.65977 4.73874 4.78132 4.81782 4.83841 4.91625 4.97285 5.00164 5.03152 5.12710 5.21006 5.31059 5.44797 5.47183 5.75782 5.84572 5.90880 6.17472 6.57838 6.82491 6.87058 7.64100 8.63829 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.027904 B = 0.002899 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.193020 B = 9656.450901 C =10257.845832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.307 6.307 3 C -0.012 4.012 4 C -0.148 4.148 5 C -0.141 4.141 6 C -0.104 4.104 7 C 0.130 3.870 8 N -0.748 5.748 9 C 0.251 3.749 10 C -0.258 4.258 11 C -0.026 4.026 12 C -0.250 4.250 13 C 0.159 3.841 14 O -0.245 6.245 15 C -0.396 4.396 16 H 0.078 0.922 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.971 3.029 20 H -0.266 1.266 21 H -0.267 1.267 22 H -0.263 1.263 23 C -0.312 4.312 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.397 0.603 38 H 0.138 0.862 39 H 0.158 0.842 40 H 0.123 0.877 41 H 0.284 0.716 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.891 -0.350 -1.081 26.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.081 6.081 3 C -0.122 4.122 4 C -0.207 4.207 5 C -0.200 4.200 6 C -0.142 4.142 7 C 0.006 3.994 8 N -0.378 5.378 9 C 0.146 3.854 10 C -0.281 4.281 11 C -0.045 4.045 12 C -0.271 4.271 13 C 0.109 3.891 14 O -0.152 6.152 15 C -0.472 4.472 16 H 0.096 0.904 17 C -0.189 4.189 18 N -0.567 5.567 19 Si 0.793 3.207 20 H -0.191 1.191 21 H -0.191 1.191 22 H -0.187 1.187 23 C -0.336 4.336 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.123 0.877 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.231 0.769 38 H 0.156 0.844 39 H 0.175 0.825 40 H 0.141 0.859 41 H 0.093 0.907 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -26.100 -1.263 -1.005 26.150 hybrid contribution 0.334 1.101 -0.504 1.256 sum -25.766 -0.162 -1.509 25.811 Atomic orbital electron populations 1.23476 0.91849 1.07041 1.05791 1.87313 1.10196 1.12642 1.97940 1.22582 0.97276 0.92217 1.00144 1.22224 1.01340 1.01367 0.95739 1.22106 1.01273 1.01300 0.95311 1.21609 0.92564 1.02815 0.97261 1.21495 0.78742 1.00767 0.98399 1.44735 1.06357 1.68072 1.18632 1.17600 0.88914 0.90707 0.88131 1.20600 1.00216 1.12030 0.95214 1.20883 0.91378 0.94568 0.97648 1.20320 0.95698 1.11814 0.99267 1.19386 0.82591 0.92626 0.94480 1.83523 1.17896 1.76562 1.37245 1.20696 0.91932 1.42357 0.92255 0.90411 1.25287 0.97103 0.96317 1.00231 1.69732 1.12643 1.46624 1.27714 0.85212 0.77548 0.78865 0.79053 1.19111 1.19121 1.18702 1.20580 0.93609 1.17328 1.02112 0.89456 0.89515 0.87704 0.90614 0.91228 0.91534 0.91923 0.91231 0.90493 0.88918 0.91237 0.92285 0.91276 0.76897 0.84379 0.82463 0.85940 0.90650 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.87 113.37 1.12 -0.07 16 2 S -0.31 -5.42 20.10 -56.49 -1.14 -6.55 16 3 C -0.01 -0.17 0.70 -10.79 -0.01 -0.18 16 4 C -0.15 -1.77 7.83 71.98 0.56 -1.21 16 5 C -0.14 -1.59 8.32 71.98 0.60 -0.99 16 6 C -0.10 -1.83 4.38 30.60 0.13 -1.70 16 7 C 0.13 2.92 4.25 86.38 0.37 3.29 16 8 N -0.75 -22.47 5.73 -339.48 -1.95 -24.41 16 9 C 0.25 9.40 6.65 38.20 0.25 9.65 16 10 C -0.26 -8.46 9.31 22.43 0.21 -8.25 16 11 C -0.03 -0.86 10.03 22.23 0.22 -0.64 16 12 C -0.25 -10.23 9.99 22.42 0.22 -10.00 16 13 C 0.16 7.90 6.64 22.56 0.15 8.05 16 14 O -0.24 -13.93 8.58 -22.73 -0.20 -14.12 16 15 C -0.40 -24.20 9.95 67.92 0.68 -23.52 16 16 H 0.08 5.00 5.43 -2.91 -0.02 4.98 16 17 C 0.01 0.50 5.49 84.83 0.47 0.97 16 18 N -0.93 -56.64 13.96 21.61 0.30 -56.34 16 19 Si 0.97 46.79 28.62 68.60 1.96 48.76 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 23 C -0.31 -14.61 9.01 22.52 0.20 -14.40 16 24 H 0.09 0.74 7.00 -2.39 -0.02 0.72 16 25 H 0.09 0.72 6.99 -2.39 -0.02 0.70 16 26 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.66 6.68 -2.39 -0.02 0.65 16 29 H 0.07 0.92 6.35 -2.39 -0.02 0.91 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.63 6.68 -2.39 -0.02 0.61 16 32 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.47 6.94 -2.39 -0.02 1.45 16 36 H 0.07 1.46 6.15 -2.38 -0.01 1.44 16 37 H 0.40 11.65 8.48 -92.71 -0.79 10.86 16 38 H 0.14 3.69 6.73 -2.91 -0.02 3.67 16 39 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 42 H 0.10 5.31 5.64 -2.91 -0.02 5.29 16 Total: -1.00 -70.08 347.09 4.40 -65.67 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.24 Total: 26.01 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 5.18 Total: -39.00 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -1.64 Total: -80.76 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.20 Total: -14.12 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.96 Total: 48.76 kcal Atomic # 16 Polarization: -5.42 SS G_CDS: -1.14 Total: -6.55 kcal Total: -70.08 4.40 -65.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385201002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.141 kcal (2) G-P(sol) polarization free energy of solvation -70.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds