Wall clock time and date at job start Tue Mar 31 2020 07:14:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81402 * 1
3 3 C 1.81390 * 103.00126 * 2 1
4 4 C 1.53000 * 109.47396 * 60.00211 * 3 2 1
5 5 C 1.52996 * 109.47352 * 299.99853 * 3 2 1
6 6 C 1.53009 * 109.47010 * 180.02562 * 3 2 1
7 7 C 1.52996 * 109.47030 * 295.00099 * 6 3 2
8 8 N 1.46495 * 109.47100 * 180.02562 * 7 6 3
9 9 C 1.39676 * 120.00065 * 180.02562 * 8 7 6
10 10 C 1.38998 * 120.04105 * 359.97246 * 9 8 7
11 11 C 1.38152 * 120.06618 * 180.02562 * 10 9 8
12 12 C 1.38174 * 120.14008 * 359.72675 * 11 10 9
13 13 C 1.38921 * 120.07677 * 0.55429 * 12 11 10
14 14 O 1.35751 * 120.02898 * 179.72009 * 13 12 11
15 15 C 1.34829 * 116.99660 * 174.18611 * 14 13 12
16 16 H 1.08001 * 120.00139 * 5.05352 * 15 14 13
17 17 C 1.38657 * 119.99856 * 185.05736 * 15 14 13
18 18 N 1.31559 * 119.99982 * 180.02562 * 17 15 14
19 19 Si 1.86800 * 120.00027 * 359.97438 * 17 15 14
20 20 H 1.48506 * 109.46813 * 90.00246 * 19 17 15
21 21 H 1.48495 * 109.47176 * 210.00133 * 19 17 15
22 22 H 1.48499 * 109.47156 * 330.00610 * 19 17 15
23 23 C 1.38756 * 120.03808 * 179.97438 * 9 8 7
24 24 H 1.09003 * 109.46820 * 300.00426 * 1 2 3
25 25 H 1.08999 * 109.46839 * 59.99391 * 1 2 3
26 26 H 1.08991 * 109.47661 * 179.97438 * 1 2 3
27 27 H 1.08998 * 109.47438 * 179.97438 * 4 3 2
28 28 H 1.09000 * 109.46921 * 299.99769 * 4 3 2
29 29 H 1.09003 * 109.47124 * 59.99695 * 4 3 2
30 30 H 1.09002 * 109.47224 * 300.00063 * 5 3 2
31 31 H 1.09000 * 109.47004 * 60.00207 * 5 3 2
32 32 H 1.09007 * 109.47210 * 179.97438 * 5 3 2
33 33 H 1.09002 * 109.47117 * 175.00157 * 6 3 2
34 34 H 1.08996 * 109.47150 * 55.00074 * 6 3 2
35 35 H 1.09002 * 109.47123 * 60.00061 * 7 6 3
36 36 H 1.09010 * 109.47355 * 299.99837 * 7 6 3
37 37 H 0.96996 * 120.00233 * 359.97438 * 8 7 6
38 38 H 1.08000 * 119.96982 * 0.02562 * 10 9 8
39 39 H 1.07995 * 119.93052 * 179.97438 * 11 10 9
40 40 H 1.07994 * 119.96332 * 180.29346 * 12 11 10
41 41 H 0.96998 * 119.99940 * 179.97438 * 18 17 15
42 42 H 1.07995 * 120.07467 * 359.97438 * 23 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2221 1.7674 0.0000
4 6 1.6341 2.4266 1.2492
5 6 1.6341 2.4266 -1.2492
6 6 3.7424 1.9398 -0.0006
7 6 4.3184 1.3914 1.3064
8 7 5.7740 1.5570 1.3060
9 6 6.5260 1.1272 2.4018
10 6 5.8942 0.5427 3.4932
11 6 6.6375 0.1179 4.5775
12 6 8.0111 0.2673 4.5783
13 6 8.6481 0.8559 3.4931
14 8 9.9971 1.0073 3.4975
15 6 10.5642 1.4741 2.3668
16 1 9.9432 1.7859 1.5401
17 6 11.9448 1.5537 2.2654
18 7 12.4982 2.0096 1.1624
19 14 13.0189 1.0149 3.6956
20 1 13.3406 -0.4283 3.5568
21 1 14.2765 1.8045 3.6951
22 1 12.2936 1.2398 4.9717
23 6 7.9048 1.2831 2.4020
24 1 -0.3633 0.5139 0.8900
25 1 -0.3633 0.5139 -0.8899
26 1 -0.3634 -1.0275 -0.0005
27 1 1.8797 3.4886 1.2495
28 1 0.5511 2.3039 1.2492
29 1 2.0531 1.9570 2.1392
30 1 2.0531 1.9570 -2.1392
31 1 0.5511 2.3038 -1.2492
32 1 1.8790 3.4888 -1.2490
33 1 3.9881 2.9980 -0.0902
34 1 4.1695 1.3951 -0.8427
35 1 4.0728 0.3332 1.3959
36 1 3.8914 1.9361 2.1485
37 1 6.2156 1.9644 0.5446
38 1 4.8211 0.4206 3.4937
39 1 6.1442 -0.3355 5.4245
40 1 8.5898 -0.0701 5.4254
41 1 13.4640 2.0657 1.0917
42 1 8.3983 1.7365 1.5552
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385201002.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 07:14:26
Heat of formation + Delta-G solvation = -28.532694 kcal
Electronic energy + Delta-G solvation = -20963.711867 eV
Core-core repulsion = 17841.615455 eV
Total energy + Delta-G solvation = -3122.096412 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 295.135 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.87288 -39.15949 -37.93312 -35.65408 -34.36827 -31.77261 -30.61497 -29.69933
-28.57563 -28.17556 -27.10456 -24.49939 -23.33105 -21.98011 -21.41763 -19.78464
-19.14961 -17.49023 -17.02740 -16.81331 -16.44669 -16.21199 -15.87512 -15.66210
-15.42359 -15.22714 -14.98108 -14.60245 -14.54791 -14.20578 -14.06736 -13.78439
-13.64132 -13.42796 -13.05285 -12.85721 -12.73001 -12.57602 -12.53818 -12.27987
-12.14250 -12.03665 -11.84375 -11.79580 -11.36789 -10.98531 -10.68856 -10.55609
-9.17379 -8.64117 -8.48093 -8.24887 -6.20449 0.73743 0.77130 0.88719
1.32068 1.37186 1.53663 1.68099 2.30065 2.49778 2.83212 3.15208
3.26791 3.61598 3.71382 3.99154 4.20879 4.22225 4.27097 4.33209
4.38396 4.40190 4.57390 4.59487 4.65977 4.73874 4.78132 4.81782
4.83841 4.91625 4.97285 5.00164 5.03152 5.12710 5.21006 5.31059
5.44797 5.47183 5.75782 5.84572 5.90880 6.17472 6.57838 6.82491
6.87058 7.64100 8.63829
Molecular weight = 295.13amu
Principal moments of inertia in cm(-1)
A = 0.027904 B = 0.002899 C = 0.002729
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1003.193020 B = 9656.450901 C =10257.845832
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 S -0.307 6.307
3 C -0.012 4.012
4 C -0.148 4.148
5 C -0.141 4.141
6 C -0.104 4.104
7 C 0.130 3.870
8 N -0.748 5.748
9 C 0.251 3.749
10 C -0.258 4.258
11 C -0.026 4.026
12 C -0.250 4.250
13 C 0.159 3.841
14 O -0.245 6.245
15 C -0.396 4.396
16 H 0.078 0.922
17 C 0.008 3.992
18 N -0.926 5.926
19 Si 0.971 3.029
20 H -0.266 1.266
21 H -0.267 1.267
22 H -0.263 1.263
23 C -0.312 4.312
24 H 0.087 0.913
25 H 0.086 0.914
26 H 0.104 0.896
27 H 0.075 0.925
28 H 0.069 0.931
29 H 0.066 0.934
30 H 0.062 0.938
31 H 0.069 0.931
32 H 0.076 0.924
33 H 0.092 0.908
34 H 0.069 0.931
35 H 0.059 0.941
36 H 0.069 0.931
37 H 0.397 0.603
38 H 0.138 0.862
39 H 0.158 0.842
40 H 0.123 0.877
41 H 0.284 0.716
42 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.891 -0.350 -1.081 26.915
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.282 4.282
2 S -0.081 6.081
3 C -0.122 4.122
4 C -0.207 4.207
5 C -0.200 4.200
6 C -0.142 4.142
7 C 0.006 3.994
8 N -0.378 5.378
9 C 0.146 3.854
10 C -0.281 4.281
11 C -0.045 4.045
12 C -0.271 4.271
13 C 0.109 3.891
14 O -0.152 6.152
15 C -0.472 4.472
16 H 0.096 0.904
17 C -0.189 4.189
18 N -0.567 5.567
19 Si 0.793 3.207
20 H -0.191 1.191
21 H -0.191 1.191
22 H -0.187 1.187
23 C -0.336 4.336
24 H 0.105 0.895
25 H 0.105 0.895
26 H 0.123 0.877
27 H 0.094 0.906
28 H 0.088 0.912
29 H 0.085 0.915
30 H 0.081 0.919
31 H 0.088 0.912
32 H 0.095 0.905
33 H 0.111 0.889
34 H 0.088 0.912
35 H 0.077 0.923
36 H 0.087 0.913
37 H 0.231 0.769
38 H 0.156 0.844
39 H 0.175 0.825
40 H 0.141 0.859
41 H 0.093 0.907
42 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -26.100 -1.263 -1.005 26.150
hybrid contribution 0.334 1.101 -0.504 1.256
sum -25.766 -0.162 -1.509 25.811
Atomic orbital electron populations
1.23476 0.91849 1.07041 1.05791 1.87313 1.10196 1.12642 1.97940
1.22582 0.97276 0.92217 1.00144 1.22224 1.01340 1.01367 0.95739
1.22106 1.01273 1.01300 0.95311 1.21609 0.92564 1.02815 0.97261
1.21495 0.78742 1.00767 0.98399 1.44735 1.06357 1.68072 1.18632
1.17600 0.88914 0.90707 0.88131 1.20600 1.00216 1.12030 0.95214
1.20883 0.91378 0.94568 0.97648 1.20320 0.95698 1.11814 0.99267
1.19386 0.82591 0.92626 0.94480 1.83523 1.17896 1.76562 1.37245
1.20696 0.91932 1.42357 0.92255 0.90411 1.25287 0.97103 0.96317
1.00231 1.69732 1.12643 1.46624 1.27714 0.85212 0.77548 0.78865
0.79053 1.19111 1.19121 1.18702 1.20580 0.93609 1.17328 1.02112
0.89456 0.89515 0.87704 0.90614 0.91228 0.91534 0.91923 0.91231
0.90493 0.88918 0.91237 0.92285 0.91276 0.76897 0.84379 0.82463
0.85940 0.90650 0.87841
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.18 9.87 113.37 1.12 -0.07 16
2 S -0.31 -5.42 20.10 -56.49 -1.14 -6.55 16
3 C -0.01 -0.17 0.70 -10.79 -0.01 -0.18 16
4 C -0.15 -1.77 7.83 71.98 0.56 -1.21 16
5 C -0.14 -1.59 8.32 71.98 0.60 -0.99 16
6 C -0.10 -1.83 4.38 30.60 0.13 -1.70 16
7 C 0.13 2.92 4.25 86.38 0.37 3.29 16
8 N -0.75 -22.47 5.73 -339.48 -1.95 -24.41 16
9 C 0.25 9.40 6.65 38.20 0.25 9.65 16
10 C -0.26 -8.46 9.31 22.43 0.21 -8.25 16
11 C -0.03 -0.86 10.03 22.23 0.22 -0.64 16
12 C -0.25 -10.23 9.99 22.42 0.22 -10.00 16
13 C 0.16 7.90 6.64 22.56 0.15 8.05 16
14 O -0.24 -13.93 8.58 -22.73 -0.20 -14.12 16
15 C -0.40 -24.20 9.95 67.92 0.68 -23.52 16
16 H 0.08 5.00 5.43 -2.91 -0.02 4.98 16
17 C 0.01 0.50 5.49 84.83 0.47 0.97 16
18 N -0.93 -56.64 13.96 21.61 0.30 -56.34 16
19 Si 0.97 46.79 28.62 68.60 1.96 48.76 16
20 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16
21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
22 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16
23 C -0.31 -14.61 9.01 22.52 0.20 -14.40 16
24 H 0.09 0.74 7.00 -2.39 -0.02 0.72 16
25 H 0.09 0.72 6.99 -2.39 -0.02 0.70 16
26 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16
27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16
28 H 0.07 0.66 6.68 -2.39 -0.02 0.65 16
29 H 0.07 0.92 6.35 -2.39 -0.02 0.91 16
30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16
31 H 0.07 0.63 6.68 -2.39 -0.02 0.61 16
32 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16
33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16
34 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16
35 H 0.06 1.47 6.94 -2.39 -0.02 1.45 16
36 H 0.07 1.46 6.15 -2.38 -0.01 1.44 16
37 H 0.40 11.65 8.48 -92.71 -0.79 10.86 16
38 H 0.14 3.69 6.73 -2.91 -0.02 3.67 16
39 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16
40 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16
41 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16
42 H 0.10 5.31 5.64 -2.91 -0.02 5.29 16
Total: -1.00 -70.08 347.09 4.40 -65.67
By element:
Atomic # 1 Polarization: 25.77 SS G_CDS: 0.24 Total: 26.01 kcal
Atomic # 6 Polarization: -44.18 SS G_CDS: 5.18 Total: -39.00 kcal
Atomic # 7 Polarization: -79.11 SS G_CDS: -1.64 Total: -80.76 kcal
Atomic # 8 Polarization: -13.93 SS G_CDS: -0.20 Total: -14.12 kcal
Atomic # 14 Polarization: 46.79 SS G_CDS: 1.96 Total: 48.76 kcal
Atomic # 16 Polarization: -5.42 SS G_CDS: -1.14 Total: -6.55 kcal
Total: -70.08 4.40 -65.67 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385201002.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.141 kcal
(2) G-P(sol) polarization free energy of solvation -70.077 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.937 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.673 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.533 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds