Wall clock time and date at job start Tue Mar 31 2020 08:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.36492 * 124.77821 * 269.69851 * 4 3 2 6 6 C 1.50693 * 125.41917 * 0.02562 * 5 4 3 7 7 C 1.34361 * 109.16079 * 179.81778 * 5 4 3 8 8 C 1.46894 * 106.35539 * 0.42934 * 7 5 4 9 9 C 1.46459 * 127.05873 * 179.75788 * 8 7 5 10 10 O 1.21341 * 119.99908 * 179.97438 * 9 8 7 11 11 C 1.50694 * 120.00176 * 359.96908 * 9 8 7 12 12 S 1.81397 * 109.47240 * 180.02562 * 11 9 8 13 13 C 1.81397 * 103.00155 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47456 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99843 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00195 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00344 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99858 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46804 * 60.00064 * 18 16 14 20 20 H 1.48501 * 109.46971 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47121 * 299.99722 * 18 16 14 22 22 C 1.34490 * 124.77332 * 90.00441 * 4 3 2 23 23 C 1.50700 * 125.92191 * 359.97438 * 22 4 3 24 24 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 25 25 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 26 26 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 28 28 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 29 29 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 30 30 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 31 31 H 1.08999 * 109.47397 * 89.99291 * 6 5 4 32 32 H 1.09001 * 109.47264 * 210.00132 * 6 5 4 33 33 H 1.08999 * 109.46942 * 329.99599 * 6 5 4 34 34 H 1.08000 * 126.81686 * 180.15669 * 7 5 4 35 35 H 1.08994 * 109.47597 * 300.00624 * 11 9 8 36 36 H 1.09009 * 109.47037 * 60.00276 * 11 9 8 37 37 H 1.09000 * 109.47323 * 300.00265 * 13 12 11 38 38 H 1.09004 * 109.47255 * 59.99846 * 13 12 11 39 39 H 0.96996 * 120.00038 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.47072 * 90.00533 * 23 22 4 41 41 H 1.09006 * 109.46692 * 210.00231 * 23 22 4 42 42 H 1.08995 * 109.46888 * 329.99623 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.2840 1.4482 1.1201 6 6 3.7740 1.4549 2.5382 7 6 5.5778 1.4423 0.7579 8 6 5.5961 1.4427 -0.7109 9 6 6.7758 1.4424 -1.5789 10 8 6.6417 1.4423 -2.7849 11 6 8.1562 1.4424 -0.9743 12 16 9.3962 1.4428 -2.2982 13 6 10.9652 1.4419 -1.3877 14 6 12.1128 1.4428 -2.3645 15 1 11.9178 1.4433 -3.4267 16 6 13.4117 1.4418 -1.9020 17 7 13.6492 1.4407 -0.6085 18 14 14.8343 1.4422 -3.1128 19 1 14.7580 2.6554 -3.9657 20 1 16.1187 1.4416 -2.3675 21 1 14.7569 0.2304 -3.9677 22 6 4.2715 1.4428 -1.1057 23 6 3.7727 1.4425 -2.5277 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6765 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.6513 0.4289 2.8850 32 1 4.4884 1.9722 3.1787 33 1 2.8135 1.9687 2.5764 34 1 6.4341 1.4423 1.4160 35 1 8.2829 2.3324 -0.3579 36 1 8.2827 0.5524 -0.3576 37 1 11.0218 2.3315 -0.7604 38 1 11.0213 0.5516 -0.7614 39 1 14.5630 1.4403 -0.2832 40 1 3.6522 2.4701 -2.8706 41 1 4.4925 0.9289 -3.1651 42 1 2.8129 0.9283 -2.5759 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:18 Heat of formation + Delta-G solvation = -16.223895 kcal Electronic energy + Delta-G solvation = -20674.807514 eV Core-core repulsion = 17553.244852 eV Total energy + Delta-G solvation = -3121.562662 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.58671 -38.44305 -35.46220 -33.05731 -32.84162 -31.69425 -29.87146 -29.11742 -28.38182 -26.30346 -24.87027 -23.03335 -22.45892 -21.69483 -19.64493 -18.27745 -16.70096 -16.34352 -15.85644 -15.64705 -15.30541 -14.97830 -14.59020 -14.40167 -14.09006 -13.89176 -13.70641 -13.43805 -13.14680 -12.83039 -12.62027 -12.49870 -12.41793 -12.36135 -12.33330 -12.20570 -12.12550 -11.69123 -11.53473 -11.44840 -11.30936 -10.78249 -10.66995 -9.90600 -9.57330 -9.25759 -8.67109 -8.65246 -8.53007 -8.03953 -6.51497 -6.11420 -4.14659 1.54007 2.23172 2.52098 2.72396 3.34730 3.36770 3.42226 3.42382 3.98566 4.17502 4.29802 4.41794 4.43379 4.58681 4.69297 4.70978 4.80252 4.92205 4.96364 5.12337 5.13379 5.25615 5.29613 5.41689 5.44962 5.48018 5.55250 5.59687 5.67486 5.68262 5.73670 5.86152 5.92270 5.92890 6.28423 6.76110 7.01959 7.12362 7.19513 7.20622 7.83760 8.04848 8.11377 8.87175 9.47647 11.00141 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.035621 B = 0.002645 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.857729 B =10584.964076 C =11184.691698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.097 3.903 4 N -0.435 5.435 5 C 0.001 3.999 6 C -0.082 4.082 7 C -0.148 4.148 8 C -0.253 4.253 9 C 0.442 3.558 10 O -0.451 6.451 11 C -0.142 4.142 12 S -0.261 6.261 13 C 0.079 3.921 14 C -0.509 4.509 15 H 0.067 0.933 16 C 0.064 3.936 17 N -0.895 5.895 18 Si 0.907 3.093 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.104 3.896 23 C -0.095 4.095 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.148 0.852 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.265 0.735 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.944 -0.795 6.786 28.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C -0.025 4.025 4 N -0.112 5.112 5 C -0.106 4.106 6 C -0.139 4.139 7 C -0.172 4.172 8 C -0.262 4.262 9 C 0.319 3.681 10 O -0.327 6.327 11 C -0.290 4.290 12 S -0.035 6.035 13 C -0.068 4.068 14 C -0.548 4.548 15 H 0.085 0.915 16 C -0.139 4.139 17 N -0.533 5.533 18 Si 0.734 3.266 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.012 4.012 23 C -0.152 4.152 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.165 0.835 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.378 -0.790 5.246 28.870 hybrid contribution 1.074 0.006 1.151 1.574 sum -27.304 -0.784 6.397 28.054 Atomic orbital electron populations 1.21703 0.94344 1.02550 1.02163 1.21914 0.96681 0.95714 1.03613 1.21986 0.77445 0.98598 1.04472 1.43578 1.05995 1.56405 1.05203 1.20146 0.90466 1.11494 0.88495 1.20310 1.01256 1.02494 0.89848 1.21883 0.95255 1.06758 0.93293 1.20945 0.92233 1.19033 0.93951 1.20782 0.88139 0.71349 0.87814 1.90500 1.88351 1.37304 1.16527 1.23699 0.96296 1.05944 1.03094 1.87050 1.02744 1.98035 1.15623 1.21101 0.88595 0.99956 0.97179 1.20642 0.89223 1.51924 0.93009 0.91502 1.24962 0.98674 0.94768 0.95531 1.69948 1.20861 1.49958 1.12552 0.86413 0.80550 0.78979 0.80706 1.19914 1.21137 1.19908 1.20805 0.89783 1.01641 0.89014 1.20579 1.01659 1.03373 0.89581 0.92370 0.92298 0.91908 0.91037 0.91051 0.89138 0.89063 0.91202 0.90036 0.92076 0.83459 0.88005 0.88017 0.94714 0.94717 0.92559 0.90423 0.88076 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.22 16 2 C -0.14 -0.81 6.26 -26.73 -0.17 -0.98 16 3 C 0.10 0.62 5.36 -4.04 -0.02 0.59 16 4 N -0.44 -4.41 2.68 -107.62 -0.29 -4.70 16 5 C 0.00 0.01 6.84 -81.89 -0.56 -0.55 16 6 C -0.08 -0.56 10.05 36.00 0.36 -0.20 16 7 C -0.15 -1.89 10.58 -37.45 -0.40 -2.28 16 8 C -0.25 -3.78 6.29 -103.09 -0.65 -4.43 16 9 C 0.44 7.93 7.14 -31.00 -0.22 7.71 16 10 O -0.45 -9.18 14.40 5.50 0.08 -9.10 16 11 C -0.14 -2.66 5.98 36.00 0.22 -2.44 16 12 S -0.26 -6.28 20.79 -107.50 -2.24 -8.52 16 13 C 0.08 2.14 5.70 36.01 0.21 2.35 16 14 C -0.51 -14.95 9.13 -34.44 -0.31 -15.26 16 15 H 0.07 1.97 7.71 -52.49 -0.40 1.57 16 16 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 17 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 18 Si 0.91 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.10 1.32 6.94 -81.43 -0.56 0.75 16 23 C -0.09 -1.03 9.28 36.01 0.33 -0.69 16 24 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.50 7.49 -51.93 -0.39 0.11 16 30 H 0.09 0.45 6.87 -51.93 -0.36 0.09 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.33 6.92 -51.93 -0.36 -0.03 16 34 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 36 H 0.10 1.77 8.14 -51.92 -0.42 1.34 16 37 H 0.03 0.97 8.14 -51.92 -0.42 0.54 16 38 H 0.03 0.97 8.14 -51.92 -0.42 0.54 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.10 1.32 6.52 -51.93 -0.34 0.98 16 42 H 0.06 0.50 7.58 -51.93 -0.39 0.11 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -33.82 364.08 -9.62 -43.44 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -6.87 Total: -3.83 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -1.51 Total: -13.90 kcal Atomic # 7 Polarization: -31.05 SS G_CDS: 0.45 Total: -30.60 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: -6.28 SS G_CDS: -2.24 Total: -8.52 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.82 -9.62 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.220 kcal (2) G-P(sol) polarization free energy of solvation -33.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds