Wall clock time and date at job start Tue Mar 31 2020 07:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47580 * 2 1 4 4 C 1.52998 * 109.46990 * 239.99813 * 2 1 3 5 5 C 1.50702 * 109.47361 * 60.00185 * 4 2 1 6 6 H 1.08001 * 119.99339 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00459 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00138 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00070 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46721 * 60.00232 * 9 7 5 11 11 H 1.48499 * 109.47109 * 180.02562 * 9 7 5 12 12 H 1.48490 * 109.47237 * 300.00318 * 9 7 5 13 13 C 1.53001 * 109.47283 * 120.00114 * 2 1 3 14 14 N 1.46494 * 109.47041 * 299.99910 * 13 2 1 15 15 C 1.34780 * 120.00331 * 179.97438 * 14 13 2 16 16 O 1.21612 * 119.99747 * 359.97438 * 15 14 13 17 17 C 1.47413 * 120.00211 * 179.97438 * 15 14 13 18 18 C 1.39775 * 120.16469 * 0.02562 * 17 15 14 19 19 C 1.37680 * 119.92928 * 179.97438 * 18 17 15 20 20 C 1.38839 * 120.27341 * 359.97438 * 19 18 17 21 21 F 1.35101 * 119.83093 * 180.02562 * 20 19 18 22 22 C 1.38344 * 120.33867 * 0.04468 * 20 19 18 23 23 C 1.38577 * 120.05941 * 359.95530 * 22 20 19 24 24 O 1.35657 * 120.13285 * 180.29774 * 23 22 20 25 25 H 1.09006 * 109.46724 * 300.00336 * 1 2 3 26 26 H 1.09001 * 109.47012 * 59.99653 * 1 2 3 27 27 H 1.08997 * 109.47721 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47687 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47231 * 300.00213 * 3 2 1 30 30 H 1.09006 * 109.47367 * 60.00057 * 3 2 1 31 31 H 1.09004 * 109.47603 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47456 * 300.00379 * 4 2 1 33 33 H 0.97001 * 120.00321 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47610 * 179.97438 * 13 2 1 35 35 H 1.09005 * 109.47313 * 59.99739 * 13 2 1 36 36 H 0.96999 * 120.00392 * 359.97438 * 14 13 2 37 37 H 1.07993 * 120.03465 * 0.02562 * 18 17 15 38 38 H 1.08000 * 119.86165 * 179.97438 * 19 18 17 39 39 H 1.08006 * 119.97085 * 179.97438 * 22 20 19 40 40 H 0.96708 * 114.00176 * 269.71893 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6271 -1.5509 -3.8527 9 14 1.2478 0.3986 -5.2572 10 1 1.7419 1.7990 -5.2571 11 1 1.7429 -0.3014 -6.4697 12 1 -0.2371 0.3976 -5.2573 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8769 -0.4914 3.6695 16 8 2.5753 -1.4807 3.7811 17 6 1.3860 0.2038 4.8731 18 6 0.5826 1.3409 4.7489 19 6 0.1264 1.9862 5.8763 20 6 0.4604 1.5119 7.1377 21 9 0.0074 2.1517 8.2380 22 6 1.2552 0.3877 7.2737 23 6 1.7220 -0.2726 6.1483 24 8 2.4965 -1.3786 6.2799 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1300 -0.7209 -1.2495 32 1 1.6765 -1.7490 -1.2493 33 1 2.8620 -1.8819 -4.7337 34 1 3.1300 -0.7217 1.2490 35 1 1.6766 -1.7490 1.2493 36 1 0.9944 0.7582 2.3564 37 1 0.3194 1.7124 3.7696 38 1 -0.4939 2.8649 5.7790 39 1 1.5118 0.0242 8.2578 40 1 3.4448 -1.1927 6.3165 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436734436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:33 Heat of formation + Delta-G solvation = -113.831144 kcal Electronic energy + Delta-G solvation = -23326.561084 eV Core-core repulsion = 19634.552678 eV Total energy + Delta-G solvation = -3692.008406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.36640 -40.58824 -38.79118 -37.03760 -36.84384 -33.69409 -32.24514 -31.15079 -30.25200 -27.16481 -26.56137 -26.31565 -24.05094 -23.30351 -22.56075 -20.50276 -19.19393 -18.54513 -17.48185 -17.17312 -16.78039 -16.30478 -16.03636 -15.47532 -15.27896 -14.98200 -14.56991 -14.50442 -14.14168 -13.83789 -13.61976 -13.28992 -13.03179 -12.77533 -12.40060 -12.08056 -12.07647 -11.89047 -11.19547 -11.15820 -11.03555 -10.89513 -10.66564 -10.44479 -10.30006 -9.91632 -9.85009 -9.44207 -9.21183 -9.08996 -8.96604 -8.73268 -8.37893 -6.01950 -4.03608 0.31763 0.69931 2.59406 3.27063 3.30377 3.36132 3.37357 3.41137 3.57401 4.02571 4.28500 4.43117 4.50609 4.59384 4.85567 5.24025 5.33414 5.33760 5.47885 5.54834 5.57997 5.67841 5.70147 5.79834 6.11060 6.17043 6.22705 6.27152 6.34372 6.49790 6.58359 6.70221 7.01373 7.03397 7.08258 7.38274 7.60720 7.65529 7.73319 7.96272 8.32571 8.38597 9.00925 9.59665 11.09451 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.031940 B = 0.002960 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.440851 B = 9455.929378 C =10133.495776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.129 3.871 14 N -0.717 5.717 15 C 0.551 3.449 16 O -0.525 6.525 17 C -0.171 4.171 18 C -0.042 4.042 19 C -0.171 4.171 20 C 0.138 3.862 21 F -0.133 7.133 22 C -0.195 4.195 23 C 0.198 3.802 24 O -0.471 6.471 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.396 0.604 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 7.966 20.702 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.006 3.994 14 N -0.369 5.369 15 C 0.337 3.663 16 O -0.402 6.402 17 C -0.175 4.175 18 C -0.061 4.061 19 C -0.189 4.189 20 C 0.118 3.882 21 F -0.111 7.111 22 C -0.214 4.214 23 C 0.151 3.849 24 O -0.283 6.283 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.232 0.768 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -3.474 6.838 20.648 22.026 hybrid contribution -0.253 1.145 -0.755 1.395 sum -3.727 7.983 19.893 21.757 Atomic orbital electron populations 1.21770 0.95245 1.01281 1.00187 1.20919 0.95502 0.95872 0.95076 1.21766 1.00621 0.95866 1.00192 1.19084 0.96370 0.95244 0.89391 1.21138 1.31338 1.12112 0.90524 0.92307 1.25008 0.95287 0.95064 0.99080 1.69949 1.36829 1.22984 1.23595 0.86710 0.79156 0.79757 0.82673 1.20321 1.21389 1.20320 1.21667 0.99010 0.96116 0.82597 1.46140 1.53125 1.31871 1.05745 1.17904 0.81131 0.84325 0.82965 1.90820 1.37548 1.25283 1.86582 1.20640 1.04275 0.98312 0.94230 1.21137 0.93373 0.92536 0.99052 1.21088 1.04280 1.03063 0.90516 1.17649 0.95695 0.91941 0.82937 1.91536 1.86976 1.80636 1.51994 1.21378 1.03147 0.96430 1.00480 1.18105 0.92187 0.84989 0.89619 1.84755 1.21584 1.26876 1.95066 0.95367 0.91345 0.93255 0.93282 0.91348 0.95373 0.96311 0.96294 0.92946 0.91599 0.91580 0.76764 0.84027 0.83749 0.83472 0.74049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.05 37.16 0.30 -1.86 16 2 C -0.07 -1.34 0.54 -154.52 -0.08 -1.42 16 3 C -0.13 -2.12 8.05 37.15 0.30 -1.82 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.36 7.65 -34.44 -0.26 -13.62 16 6 H 0.06 1.46 5.68 -52.49 -0.30 1.17 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.13 2.20 4.56 -4.04 -0.02 2.18 16 14 N -0.72 -10.01 4.91 -61.39 -0.30 -10.31 16 15 C 0.55 8.13 7.76 -12.52 -0.10 8.03 16 16 O -0.52 -9.59 15.16 -16.63 -0.25 -9.84 16 17 C -0.17 -1.98 5.89 -104.84 -0.62 -2.59 16 18 C -0.04 -0.37 9.53 -39.21 -0.37 -0.74 16 19 C -0.17 -1.35 10.00 -39.56 -0.40 -1.74 16 20 C 0.14 1.22 7.30 -39.32 -0.29 0.93 16 21 F -0.13 -1.22 17.26 2.25 0.04 -1.18 16 22 C -0.20 -1.77 9.95 -39.42 -0.39 -2.16 16 23 C 0.20 2.18 6.71 -38.71 -0.26 1.92 16 24 O -0.47 -5.44 11.57 -40.57 -0.47 -5.91 16 25 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 26 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 30 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.40 4.54 4.19 -40.82 -0.17 4.37 16 37 H 0.14 0.96 6.40 -52.49 -0.34 0.62 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.40 3.01 9.06 45.56 0.41 3.43 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -31.92 334.09 -6.94 -38.87 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.31 Total: 3.52 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.40 Total: -10.68 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.44 Total: -35.71 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.72 Total: -15.75 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.92 -6.94 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436734436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.965 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds