Wall clock time and date at job start Tue Mar 31 2020 07:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47172 * 2 1 4 4 C 1.53002 * 109.47292 * 240.00310 * 2 1 3 5 5 C 1.50699 * 109.47145 * 59.99504 * 4 2 1 6 6 H 1.07996 * 120.00151 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99649 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00350 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99590 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47243 * 60.00343 * 9 7 5 11 11 H 1.48507 * 109.46837 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47408 * 300.00007 * 9 7 5 13 13 C 1.52995 * 109.47313 * 120.00009 * 2 1 3 14 14 N 1.46497 * 109.47095 * 300.00287 * 13 2 1 15 15 C 1.34775 * 120.00265 * 180.02562 * 14 13 2 16 16 O 1.21599 * 120.00042 * 359.97438 * 15 14 13 17 17 C 1.47540 * 120.00346 * 179.97438 * 15 14 13 18 18 C 1.39716 * 120.17874 * 0.02562 * 17 15 14 19 19 C 1.37983 * 119.88289 * 179.97438 * 18 17 15 20 20 F 1.35105 * 119.87625 * 179.97438 * 19 18 17 21 21 C 1.38729 * 120.24828 * 0.02562 * 19 18 17 22 22 C 1.38055 * 120.36342 * 359.67663 * 21 19 18 23 23 C 1.38683 * 120.11312 * 0.60102 * 22 21 19 24 24 O 1.35695 * 120.12675 * 179.69885 * 23 22 21 25 25 H 1.08993 * 109.47149 * 300.00017 * 1 2 3 26 26 H 1.09000 * 109.47039 * 60.00459 * 1 2 3 27 27 H 1.08999 * 109.46979 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47612 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47132 * 300.00392 * 3 2 1 30 30 H 1.09006 * 109.47195 * 59.99766 * 3 2 1 31 31 H 1.09001 * 109.47369 * 179.97438 * 4 2 1 32 32 H 1.08999 * 109.46646 * 299.99688 * 4 2 1 33 33 H 0.96997 * 120.00126 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47219 * 179.97438 * 13 2 1 35 35 H 1.08999 * 109.47274 * 59.99915 * 13 2 1 36 36 H 0.97005 * 119.99985 * 359.97438 * 14 13 2 37 37 H 1.08004 * 120.05888 * 359.96265 * 18 17 15 38 38 H 1.07998 * 119.81763 * 179.97438 * 21 19 18 39 39 H 1.08002 * 119.94280 * 180.29629 * 22 21 19 40 40 H 0.96696 * 114.00125 * 269.72392 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8674 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 2.6274 -1.5508 -3.8527 9 14 1.2491 0.3994 -5.2572 10 1 1.7441 1.7994 -5.2567 11 1 1.7441 -0.3007 -6.4697 12 1 -0.2359 0.3994 -5.2578 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0307 2.4453 15 6 1.8777 -0.4908 3.6694 16 8 2.5768 -1.4794 3.7811 17 6 1.3863 0.2050 4.8741 18 6 0.5823 1.3409 4.7503 19 6 0.1257 1.9866 5.8811 20 9 -0.6513 3.0853 5.7612 21 6 0.4624 1.5124 7.1406 22 6 1.2511 0.3873 7.2748 23 6 1.7231 -0.2700 6.1485 24 8 2.5034 -1.3723 6.2801 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1301 -0.7208 -1.2495 32 1 1.6767 -1.7488 -1.2492 33 1 2.8618 -1.8821 -4.7337 34 1 3.1300 -0.7216 1.2489 35 1 1.6767 -1.7489 1.2492 36 1 0.9942 0.7582 2.3563 37 1 0.3189 1.7131 3.7713 38 1 0.1015 2.0234 8.0209 39 1 1.5051 0.0212 8.2586 40 1 3.4505 -1.1815 6.3180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436740488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:36 Heat of formation + Delta-G solvation = -113.112283 kcal Electronic energy + Delta-G solvation = -23447.384443 eV Core-core repulsion = 19755.407209 eV Total energy + Delta-G solvation = -3691.977234 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.22426 -40.58974 -38.81986 -37.03968 -36.75124 -33.73689 -32.34062 -31.48532 -29.66241 -27.18195 -26.55214 -26.41604 -24.37216 -23.13036 -22.45647 -20.55230 -19.10565 -18.48323 -17.74377 -17.17089 -16.38806 -16.12533 -16.08591 -15.66191 -15.28354 -15.02900 -14.59735 -14.52311 -14.01779 -13.68715 -13.62487 -13.30796 -13.00835 -12.76124 -12.31141 -12.18616 -12.07301 -12.02849 -11.19129 -11.06598 -11.02789 -10.88477 -10.65796 -10.44125 -10.29297 -9.91045 -9.85407 -9.61090 -9.20743 -8.96093 -8.92697 -8.74235 -8.37222 -6.01371 -4.02935 0.33387 0.65945 2.60431 3.22600 3.31157 3.36696 3.38056 3.41076 3.80528 3.86315 4.26468 4.36320 4.43977 4.74300 4.85584 5.21180 5.33994 5.39038 5.45952 5.50052 5.58249 5.62248 5.70761 5.82981 6.12114 6.17706 6.23080 6.27311 6.34762 6.48998 6.59390 6.70150 7.02092 7.04053 7.08721 7.42314 7.60747 7.63659 7.73793 7.96899 8.29581 8.39012 9.01572 9.60282 11.10043 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.025878 B = 0.003223 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.736692 B = 8686.418143 C = 9569.229389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.128 3.872 14 N -0.715 5.715 15 C 0.550 3.450 16 O -0.521 6.521 17 C -0.131 4.131 18 C -0.108 4.108 19 C 0.083 3.917 20 F -0.135 7.135 21 C -0.116 4.116 22 C -0.128 4.128 23 C 0.158 3.842 24 O -0.473 6.473 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.397 0.603 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.160 7.408 21.985 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.006 3.994 14 N -0.368 5.368 15 C 0.335 3.665 16 O -0.398 6.398 17 C -0.135 4.135 18 C -0.127 4.127 19 C 0.063 3.937 20 F -0.114 7.114 21 C -0.135 4.135 22 C -0.146 4.146 23 C 0.111 3.889 24 O -0.284 6.284 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.233 0.767 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.111 6.297 21.876 22.975 hybrid contribution -0.330 1.266 -1.029 1.664 sum -3.441 7.563 20.847 22.441 Atomic orbital electron populations 1.21772 0.95237 1.01288 1.00224 1.20925 0.95517 0.95880 0.95063 1.21771 1.00621 0.95865 1.00228 1.19081 0.96364 0.95235 0.89369 1.21142 1.31331 1.12128 0.90525 0.92299 1.25009 0.95278 0.95069 0.99081 1.69949 1.36832 1.22991 1.23594 0.86707 0.79159 0.79764 0.82649 1.20316 1.21386 1.20314 1.21684 0.99042 0.96131 0.82563 1.46165 1.52972 1.31865 1.05767 1.17903 0.81251 0.84370 0.82934 1.90823 1.37335 1.25149 1.86512 1.20421 1.01885 0.96606 0.94586 1.21270 0.97589 0.94990 0.98869 1.17478 0.95644 0.86468 0.94085 1.91537 1.72274 1.50720 1.96836 1.21189 0.98729 0.97066 0.96477 1.21309 0.99373 0.94747 0.99179 1.18493 0.93883 0.86283 0.90225 1.84775 1.21326 1.27224 1.95082 0.95380 0.91310 0.93234 0.93260 0.91313 0.95390 0.96301 0.96286 0.92948 0.91527 0.91509 0.76700 0.83877 0.83856 0.83646 0.74411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.04 0.90 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.49 7.65 -34.44 -0.26 -13.75 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.13 2.23 4.56 -4.05 -0.02 2.21 16 14 N -0.72 -10.34 4.91 -61.35 -0.30 -10.64 16 15 C 0.55 8.28 7.76 -12.47 -0.10 8.18 16 16 O -0.52 -9.55 15.16 -16.62 -0.25 -9.81 16 17 C -0.13 -1.56 5.88 -104.85 -0.62 -2.18 16 18 C -0.11 -1.08 9.51 -39.12 -0.37 -1.45 16 19 C 0.08 0.77 7.28 -39.49 -0.29 0.48 16 20 F -0.14 -1.34 17.26 2.25 0.04 -1.30 16 21 C -0.12 -0.87 10.01 -39.47 -0.39 -1.26 16 22 C -0.13 -1.00 9.97 -39.48 -0.39 -1.39 16 23 C 0.16 1.69 6.72 -38.72 -0.26 1.43 16 24 O -0.47 -5.35 11.57 -40.68 -0.47 -5.82 16 25 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 26 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 30 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.40 4.87 4.19 -40.82 -0.17 4.70 16 37 H 0.14 1.25 6.40 -52.48 -0.34 0.92 16 38 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.40 2.93 9.06 45.56 0.41 3.35 16 LS Contribution 334.10 15.07 5.03 5.03 Total: -1.00 -32.03 334.10 -6.94 -38.97 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.31 Total: 3.78 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -2.40 Total: -10.74 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.44 Total: -36.17 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.72 Total: -15.62 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.03 -6.94 -38.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436740488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.140 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds