Wall clock time and date at job start Tue Mar 31 2020 08:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00262 * 2 1 4 4 N 1.46496 * 109.47226 * 124.99661 * 3 2 1 5 5 C 1.46499 * 120.00331 * 270.00188 * 4 3 2 6 6 C 1.50699 * 109.47136 * 269.99694 * 5 4 3 7 7 H 1.08004 * 120.00039 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00026 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99692 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99908 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47273 * 89.99713 * 10 8 6 12 12 H 1.48501 * 109.46914 * 209.99419 * 10 8 6 13 13 H 1.48498 * 109.46913 * 329.99307 * 10 8 6 14 14 C 1.34784 * 119.99718 * 90.00280 * 4 3 2 15 15 O 1.21275 * 120.00043 * 179.97438 * 14 4 3 16 16 C 1.50699 * 119.99713 * 359.97438 * 14 4 3 17 17 H 1.08994 * 115.55238 * 22.08193 * 16 14 4 18 18 C 1.52991 * 117.50648 * 167.75888 * 16 14 4 19 19 C 1.53098 * 117.49349 * 236.42453 * 16 14 4 20 20 C 1.52929 * 117.37293 * 145.21856 * 19 16 14 21 21 C 1.53070 * 109.68364 * 279.49065 * 20 19 16 22 22 S 1.81631 * 109.05641 * 299.81518 * 21 20 19 23 23 C 1.81612 * 102.49757 * 55.77049 * 22 21 20 24 24 C 1.52928 * 117.37974 * 359.75247 * 19 16 14 25 25 H 1.08003 * 120.00485 * 180.02562 * 1 2 3 26 26 H 1.08007 * 120.00114 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00085 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46687 * 4.99779 * 3 2 1 29 29 H 1.08994 * 109.47202 * 245.00276 * 3 2 1 30 30 H 1.08995 * 109.47156 * 30.00377 * 5 4 3 31 31 H 1.09003 * 109.46858 * 150.00348 * 5 4 3 32 32 H 0.97008 * 119.99755 * 180.02562 * 9 8 6 33 33 H 1.09001 * 117.49591 * 359.97438 * 18 16 14 34 34 H 1.09003 * 117.49156 * 214.98873 * 18 16 14 35 35 H 1.08998 * 109.43813 * 39.56117 * 20 19 16 36 36 H 1.09004 * 109.43608 * 159.43219 * 20 19 16 37 37 H 1.08999 * 109.54379 * 179.97438 * 21 20 19 38 38 H 1.09003 * 109.54070 * 59.68836 * 21 20 19 39 39 H 1.09008 * 109.54284 * 184.34984 * 23 22 21 40 40 H 1.09003 * 109.53951 * 64.10407 * 23 22 21 41 41 H 1.09003 * 109.44085 * 200.56987 * 24 19 16 42 42 H 1.09004 * 109.43740 * 320.48497 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3034 3.8370 1.6365 8 6 2.5185 4.0667 3.6082 9 7 2.7672 5.3572 3.6565 10 14 1.7238 3.2134 5.0676 11 1 2.7797 2.7231 5.9895 12 1 0.8471 4.1735 5.7851 13 1 0.9129 2.0654 4.5883 14 6 4.2497 0.8661 0.9824 15 8 5.0199 0.8887 1.9189 16 6 4.6968 0.3173 -0.3480 17 1 4.1249 0.6552 -1.2121 18 6 6.1941 0.0720 -0.5439 19 6 5.2400 -1.1138 -0.3756 20 6 4.9417 -1.9553 -1.6173 21 6 3.5232 -2.5233 -1.5265 22 16 3.3958 -3.5665 -0.0450 23 6 3.9053 -2.4326 1.2790 24 6 5.2916 -1.8723 0.9513 25 1 -0.5401 -0.9353 0.0004 26 1 -0.5401 0.9354 0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6212 1.4026 -0.9313 30 1 1.4888 1.6966 2.5460 31 1 3.0990 1.3603 3.2259 32 1 2.5383 5.8659 4.4501 33 1 6.8560 0.3080 0.2893 34 1 6.6072 0.2485 -1.5371 35 1 5.0264 -1.3316 -2.5071 36 1 5.6573 -2.7752 -1.6803 37 1 3.3128 -3.1222 -2.4126 38 1 2.8064 -1.7050 -1.4589 39 1 3.9443 -2.9716 2.2257 40 1 3.1894 -1.6140 1.3535 41 1 6.0050 -2.6926 0.8729 42 1 5.6047 -1.1939 1.7450 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451956489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:54 Heat of formation + Delta-G solvation = 8.433654 kcal Electronic energy + Delta-G solvation = -22928.206682 eV Core-core repulsion = 19807.713252 eV Total energy + Delta-G solvation = -3120.493431 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.24556 -37.68007 -35.79701 -33.21177 -32.50785 -32.07551 -31.74907 -28.60130 -25.81201 -25.21353 -23.70720 -23.34469 -21.59540 -20.07424 -19.62196 -18.01941 -17.01305 -16.82228 -16.65623 -15.79027 -15.05484 -14.72634 -14.43729 -14.39716 -14.03359 -13.90769 -13.63830 -13.24469 -13.04359 -12.86966 -12.53374 -12.33653 -12.29074 -11.82278 -11.73824 -11.67105 -11.38843 -11.18043 -10.94965 -10.58555 -10.56718 -10.31460 -10.17981 -9.91602 -9.68535 -9.56940 -9.28783 -9.03356 -8.61458 -7.78340 -7.74861 -6.11382 -4.10267 1.71771 2.32869 2.47013 2.93058 3.27029 3.33084 3.34961 3.75401 3.89336 4.37115 4.54083 4.60849 4.68019 4.76205 4.86861 4.99623 5.06918 5.16811 5.22060 5.23388 5.28340 5.39439 5.42100 5.52489 5.62040 5.67325 5.75992 5.80041 5.88458 5.94940 6.05062 6.11845 6.16919 6.29590 6.67122 6.71020 6.81847 6.90545 7.30743 7.57958 8.19077 8.43678 8.88878 8.94614 9.48900 11.01953 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018837 B = 0.005329 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.104405 B = 5253.102368 C = 5620.406461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.176 4.176 3 C 0.136 3.864 4 N -0.584 5.584 5 C 0.218 3.782 6 C -0.529 4.529 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.874 3.126 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.539 3.461 15 O -0.537 6.537 16 C -0.182 4.182 17 H 0.119 0.881 18 C -0.133 4.133 19 C -0.109 4.109 20 C -0.080 4.080 21 C -0.083 4.083 22 S -0.273 6.273 23 C -0.077 4.077 24 C -0.094 4.094 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.036 0.964 32 H 0.265 0.735 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.527 -15.839 -12.219 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.195 4.195 3 C 0.012 3.988 4 N -0.313 5.313 5 C 0.098 3.902 6 C -0.567 4.567 7 H 0.092 0.908 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.327 3.673 15 O -0.415 6.415 16 C -0.203 4.203 17 H 0.136 0.864 18 C -0.170 4.170 19 C -0.109 4.109 20 C -0.119 4.119 21 C -0.231 4.231 22 S -0.047 6.047 23 C -0.225 4.225 24 C -0.133 4.133 25 H 0.114 0.886 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.567 -16.703 -11.489 20.281 hybrid contribution -0.281 1.115 0.656 1.324 sum 0.286 -15.589 -10.832 18.985 Atomic orbital electron populations 1.23863 0.95824 1.01884 1.00083 1.23558 0.96511 0.99094 1.00351 1.20632 0.93025 0.95354 0.89774 1.47802 1.10542 1.60096 1.12902 1.19651 0.94874 0.95177 0.80512 1.21315 1.41196 0.91101 1.03114 0.90755 1.24841 0.95249 0.94707 0.98100 1.69896 1.47752 1.06595 1.29274 0.86881 0.79912 0.79728 0.83394 1.19900 1.21012 1.19028 1.19294 0.82006 0.77912 0.88133 1.90630 1.52547 1.56600 1.41727 1.22590 0.99209 0.99892 0.98636 0.86368 1.23113 0.91253 0.99099 1.03580 1.21544 1.04550 0.88231 0.96619 1.21298 0.95511 0.99351 0.95772 1.23450 1.00269 1.01641 0.97752 1.86657 1.89638 1.24123 1.04316 1.23448 1.00249 1.00501 0.98273 1.21420 0.95620 1.00268 0.95982 0.88590 0.88225 0.87463 0.89271 0.90500 0.95241 0.94649 0.92545 0.87230 0.88132 0.90596 0.89944 0.87875 0.89441 0.87870 0.89512 0.90362 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 14.32 29.02 0.42 -1.78 16 2 C -0.18 -2.37 9.68 -36.02 -0.35 -2.72 16 3 C 0.14 2.13 5.67 -5.20 -0.03 2.10 16 4 N -0.58 -11.67 2.44 -176.44 -0.43 -12.10 16 5 C 0.22 5.27 4.23 -5.19 -0.02 5.25 16 6 C -0.53 -15.06 9.94 -34.44 -0.34 -15.41 16 7 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 10 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 14 C 0.54 10.48 6.01 -10.98 -0.07 10.42 16 15 O -0.54 -12.48 13.99 5.56 0.08 -12.40 16 16 C -0.18 -2.59 5.21 -91.73 -0.48 -3.07 16 17 H 0.12 1.47 6.07 -51.93 -0.32 1.15 16 18 C -0.13 -1.67 9.39 -26.67 -0.25 -1.92 16 19 C -0.11 -1.29 1.76 -154.47 -0.27 -1.56 16 20 C -0.08 -0.74 5.46 -26.73 -0.15 -0.89 16 21 C -0.08 -0.79 6.46 37.19 0.24 -0.55 16 22 S -0.27 -3.22 22.25 -107.50 -2.39 -5.61 16 23 C -0.08 -1.01 6.42 37.19 0.24 -0.77 16 24 C -0.09 -1.23 4.89 -26.73 -0.13 -1.36 16 25 H 0.10 1.03 8.06 -52.48 -0.42 0.61 16 26 H 0.10 1.19 7.84 -52.48 -0.41 0.78 16 27 H 0.11 1.42 4.87 -52.49 -0.26 1.16 16 28 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 29 H 0.08 1.03 5.86 -51.93 -0.30 0.72 16 30 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 31 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.11 1.58 7.72 -51.93 -0.40 1.18 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.87 6.17 -51.93 -0.32 0.55 16 39 H 0.10 1.29 8.14 -51.92 -0.42 0.87 16 40 H 0.09 1.30 5.97 -51.93 -0.31 0.99 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.10 1.59 5.96 -51.93 -0.31 1.28 16 LS Contribution 341.17 15.07 5.14 5.14 Total: -1.00 -32.35 341.17 -9.09 -41.44 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.30 Total: 3.65 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.29 Total: -10.22 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.34 Total: -38.88 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.39 Total: -5.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.35 -9.09 -41.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451956489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.870 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds