Wall clock time and date at job start Tue Mar 31 2020 08:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 120.00262 * 2 1 4 4 N 1.46496 * 109.47226 * 124.99661 * 3 2 1 5 5 C 1.46499 * 120.00331 * 270.00188 * 4 3 2 6 6 C 1.50699 * 109.47136 * 269.99694 * 5 4 3 7 7 H 1.08004 * 120.00039 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00026 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99692 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99908 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47273 * 89.99713 * 10 8 6 12 12 H 1.48501 * 109.46914 * 209.99419 * 10 8 6 13 13 H 1.48498 * 109.46913 * 329.99307 * 10 8 6 14 14 C 1.34784 * 119.99718 * 90.00280 * 4 3 2 15 15 O 1.21275 * 120.00043 * 179.97438 * 14 4 3 16 16 C 1.50699 * 119.99713 * 359.97438 * 14 4 3 17 17 H 1.08994 * 115.55238 * 22.08193 * 16 14 4 18 18 C 1.52991 * 117.50648 * 167.75888 * 16 14 4 19 19 C 1.53098 * 117.49349 * 236.42453 * 16 14 4 20 20 C 1.52929 * 117.37293 * 145.21856 * 19 16 14 21 21 C 1.53070 * 109.68364 * 279.49065 * 20 19 16 22 22 S 1.81631 * 109.05641 * 299.81518 * 21 20 19 23 23 C 1.81612 * 102.49757 * 55.77049 * 22 21 20 24 24 C 1.52928 * 117.37974 * 359.75247 * 19 16 14 25 25 H 1.08003 * 120.00485 * 180.02562 * 1 2 3 26 26 H 1.08007 * 120.00114 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00085 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46687 * 4.99779 * 3 2 1 29 29 H 1.08994 * 109.47202 * 245.00276 * 3 2 1 30 30 H 1.08995 * 109.47156 * 30.00377 * 5 4 3 31 31 H 1.09003 * 109.46858 * 150.00348 * 5 4 3 32 32 H 0.97008 * 119.99755 * 180.02562 * 9 8 6 33 33 H 1.09001 * 117.49591 * 359.97438 * 18 16 14 34 34 H 1.09003 * 117.49156 * 214.98873 * 18 16 14 35 35 H 1.08998 * 109.43813 * 39.56117 * 20 19 16 36 36 H 1.09004 * 109.43608 * 159.43219 * 20 19 16 37 37 H 1.08999 * 109.54379 * 179.97438 * 21 20 19 38 38 H 1.09003 * 109.54070 * 59.68836 * 21 20 19 39 39 H 1.09008 * 109.54284 * 184.34984 * 23 22 21 40 40 H 1.09003 * 109.53951 * 64.10407 * 23 22 21 41 41 H 1.09003 * 109.44085 * 200.56987 * 24 19 16 42 42 H 1.09004 * 109.43740 * 320.48497 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3034 3.8370 1.6365 8 6 2.5185 4.0667 3.6082 9 7 2.7672 5.3572 3.6565 10 14 1.7238 3.2134 5.0676 11 1 2.7797 2.7231 5.9895 12 1 0.8471 4.1735 5.7851 13 1 0.9129 2.0654 4.5883 14 6 4.2497 0.8661 0.9824 15 8 5.0199 0.8887 1.9189 16 6 4.6968 0.3173 -0.3480 17 1 4.1249 0.6552 -1.2121 18 6 6.1941 0.0720 -0.5439 19 6 5.2400 -1.1138 -0.3756 20 6 4.9417 -1.9553 -1.6173 21 6 3.5232 -2.5233 -1.5265 22 16 3.3958 -3.5665 -0.0450 23 6 3.9053 -2.4326 1.2790 24 6 5.2916 -1.8723 0.9513 25 1 -0.5401 -0.9353 0.0004 26 1 -0.5401 0.9354 0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6212 1.4026 -0.9313 30 1 1.4888 1.6966 2.5460 31 1 3.0990 1.3603 3.2259 32 1 2.5383 5.8659 4.4501 33 1 6.8560 0.3080 0.2893 34 1 6.6072 0.2485 -1.5371 35 1 5.0264 -1.3316 -2.5071 36 1 5.6573 -2.7752 -1.6803 37 1 3.3128 -3.1222 -2.4126 38 1 2.8064 -1.7050 -1.4589 39 1 3.9443 -2.9716 2.2257 40 1 3.1894 -1.6140 1.3535 41 1 6.0050 -2.6926 0.8729 42 1 5.6047 -1.1939 1.7450 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451956489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:53 Heat of formation + Delta-G solvation = -10.381614 kcal Electronic energy + Delta-G solvation = -22929.022573 eV Core-core repulsion = 19807.713252 eV Total energy + Delta-G solvation = -3121.309322 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.53814 -38.95259 -37.24918 -35.08036 -33.81872 -33.40597 -32.62901 -30.48152 -27.06363 -26.53510 -25.08167 -24.23200 -23.19583 -21.17686 -20.75756 -19.29389 -19.11020 -18.24278 -17.69379 -17.21438 -16.39142 -16.17703 -15.63455 -15.61121 -15.39286 -14.94858 -14.69620 -14.62871 -14.32882 -14.20740 -13.83331 -13.67308 -13.56421 -13.30277 -13.09782 -12.89351 -12.75708 -12.55838 -12.33356 -12.21913 -11.96088 -11.77264 -11.50464 -11.33722 -10.95823 -10.86800 -10.59309 -10.56106 -10.34867 -9.44171 -8.65284 -8.37543 -6.42289 0.83194 1.26057 1.30224 1.31856 1.40611 1.55767 1.62022 2.26750 2.33991 2.76884 2.96727 3.49974 3.61298 3.70605 3.72810 3.91246 3.99752 4.06019 4.14794 4.16419 4.34966 4.38213 4.47492 4.51677 4.71290 4.73494 4.79340 4.82331 4.85813 4.90061 4.95991 4.97812 5.05189 5.09841 5.19242 5.31157 5.42328 5.51098 5.70144 5.88238 6.20758 6.58786 6.67258 7.18516 7.41213 8.79381 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018837 B = 0.005329 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.104405 B = 5253.102368 C = 5620.406461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.186 4.186 3 C 0.133 3.867 4 N -0.592 5.592 5 C 0.231 3.769 6 C -0.534 4.534 7 H 0.030 0.970 8 C 0.014 3.986 9 N -0.943 5.943 10 Si 0.943 3.057 11 H -0.276 1.276 12 H -0.273 1.273 13 H -0.242 1.242 14 C 0.531 3.469 15 O -0.588 6.588 16 C -0.194 4.194 17 H 0.143 0.857 18 C -0.130 4.130 19 C -0.088 4.088 20 C -0.074 4.074 21 C -0.079 4.079 22 S -0.279 6.279 23 C -0.075 4.075 24 C -0.094 4.094 25 H 0.117 0.883 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.042 0.958 31 H 0.016 0.984 32 H 0.269 0.731 33 H 0.082 0.918 34 H 0.137 0.863 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 -18.376 -14.331 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.205 4.205 3 C 0.011 3.989 4 N -0.321 5.321 5 C 0.108 3.892 6 C -0.573 4.573 7 H 0.048 0.952 8 C -0.184 4.184 9 N -0.583 5.583 10 Si 0.766 3.234 11 H -0.202 1.202 12 H -0.198 1.198 13 H -0.165 1.165 14 C 0.321 3.679 15 O -0.469 6.469 16 C -0.214 4.214 17 H 0.161 0.839 18 C -0.168 4.168 19 C -0.089 4.089 20 C -0.113 4.113 21 C -0.227 4.227 22 S -0.054 6.054 23 C -0.224 4.224 24 C -0.133 4.133 25 H 0.135 0.865 26 H 0.119 0.881 27 H 0.131 0.869 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.155 0.845 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.147 0.853 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.111 0.889 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.559 -19.258 -13.652 23.612 hybrid contribution 0.097 1.945 1.256 2.318 sum -0.461 -17.312 -12.395 21.297 Atomic orbital electron populations 1.24076 0.95415 1.02967 0.97718 1.23348 0.96776 0.97917 1.02422 1.20833 0.92563 0.96391 0.89115 1.47865 1.11834 1.59840 1.12608 1.19225 0.95108 0.92160 0.82668 1.21534 1.40533 0.93391 1.01836 0.95205 1.25789 0.95898 0.95328 1.01364 1.70042 1.49358 1.08402 1.30513 0.85786 0.79139 0.79402 0.79095 1.20181 1.19753 1.16489 1.20199 0.81133 0.76909 0.89645 1.90600 1.53806 1.58551 1.43975 1.22535 1.00734 1.02132 0.96025 0.83914 1.23223 0.89831 0.99242 1.04472 1.21656 1.02581 0.87338 0.97304 1.21352 0.95528 0.99564 0.94828 1.23587 1.00466 1.01531 0.97075 1.86691 1.89560 1.24145 1.04965 1.23306 0.99557 1.00163 0.99338 1.21380 0.96014 1.00099 0.95821 0.86513 0.88098 0.86902 0.90602 0.88095 0.93958 0.96634 0.92227 0.89958 0.84480 0.87783 0.88643 0.85261 0.89520 0.88239 0.91680 0.88879 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 14.32 67.79 0.97 -2.61 16 2 C -0.19 -4.64 9.68 25.65 0.25 -4.39 16 3 C 0.13 4.06 5.67 85.63 0.49 4.55 16 4 N -0.59 -24.12 2.44 -830.53 -2.03 -26.14 16 5 C 0.23 11.42 4.23 85.63 0.36 11.78 16 6 C -0.53 -31.74 9.94 25.60 0.25 -31.48 16 7 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 8 C 0.01 0.86 5.47 84.65 0.46 1.33 16 9 N -0.94 -59.95 13.96 21.45 0.30 -59.65 16 10 Si 0.94 45.09 27.47 68.60 1.88 46.98 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 13 H -0.24 -10.52 6.54 99.48 0.65 -9.87 16 14 C 0.53 21.19 6.01 87.66 0.53 21.72 16 15 O -0.59 -28.90 13.99 -3.01 -0.04 -28.94 16 16 C -0.19 -5.26 5.21 -11.51 -0.06 -5.32 16 17 H 0.14 3.13 6.07 -2.39 -0.01 3.11 16 18 C -0.13 -3.08 9.39 30.63 0.29 -2.79 16 19 C -0.09 -1.91 1.76 -52.15 -0.09 -2.00 16 20 C -0.07 -1.03 5.46 30.59 0.17 -0.87 16 21 C -0.08 -1.18 6.46 72.01 0.47 -0.71 16 22 S -0.28 -5.89 22.25 -56.49 -1.26 -7.15 16 23 C -0.08 -1.94 6.42 72.01 0.46 -1.48 16 24 C -0.09 -2.43 4.89 30.59 0.15 -2.28 16 25 H 0.12 2.09 8.06 -2.91 -0.02 2.07 16 26 H 0.10 2.18 7.84 -2.91 -0.02 2.16 16 27 H 0.11 2.73 4.87 -2.91 -0.01 2.72 16 28 H 0.08 2.49 7.72 -2.39 -0.02 2.47 16 29 H 0.10 2.52 5.86 -2.39 -0.01 2.51 16 30 H 0.04 1.97 7.13 -2.39 -0.02 1.96 16 31 H 0.02 0.83 6.85 -2.39 -0.02 0.82 16 32 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 33 H 0.08 2.43 7.72 -2.39 -0.02 2.41 16 34 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.10 0.99 8.08 -2.39 -0.02 0.97 16 36 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.37 6.17 -2.39 -0.01 1.36 16 39 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 40 H 0.06 1.95 5.97 -2.39 -0.01 1.93 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.06 2.12 5.96 -2.38 -0.01 2.11 16 Total: -1.00 -75.20 341.17 4.50 -70.70 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.95 Total: 18.76 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 4.69 Total: -14.55 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.73 Total: -85.79 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.04 Total: -28.94 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.98 kcal Atomic # 16 Polarization: -5.89 SS G_CDS: -1.26 Total: -7.15 kcal Total: -75.20 4.50 -70.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451956489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.314 kcal (2) G-P(sol) polarization free energy of solvation -75.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds