Wall clock time and date at job start Tue Mar 31 2020 08:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99981 * 2 1 4 4 N 1.46499 * 109.47245 * 125.00359 * 3 2 1 5 5 C 1.46499 * 119.99949 * 89.99809 * 4 3 2 6 6 C 1.50706 * 109.47286 * 269.99933 * 5 4 3 7 7 H 1.08001 * 119.99991 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99706 * 179.72744 * 6 5 4 9 9 N 1.31509 * 120.00399 * 0.27526 * 8 6 5 10 10 Si 1.86799 * 119.99729 * 180.27975 * 8 6 5 11 11 H 1.48500 * 109.47312 * 59.99674 * 10 8 6 12 12 H 1.48497 * 109.47340 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47269 * 299.99701 * 10 8 6 14 14 C 1.34775 * 119.99993 * 270.00397 * 4 3 2 15 15 O 1.21277 * 120.00199 * 180.02562 * 14 4 3 16 16 C 1.50708 * 120.00061 * 359.97438 * 14 4 3 17 17 H 1.08997 * 115.54355 * 352.04867 * 16 14 4 18 18 C 1.52972 * 117.49376 * 206.39793 * 16 14 4 19 19 C 1.53089 * 117.49449 * 137.72657 * 16 14 4 20 20 C 1.52931 * 117.37319 * 0.23443 * 19 16 14 21 21 C 1.53081 * 109.68813 * 279.49054 * 20 19 16 22 22 S 1.81629 * 109.05461 * 299.81556 * 21 20 19 23 23 C 1.81627 * 102.49941 * 55.77269 * 22 21 20 24 24 C 1.52931 * 117.37636 * 214.77665 * 19 16 14 25 25 H 1.07997 * 119.99844 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.00075 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00239 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.46855 * 5.00178 * 3 2 1 29 29 H 1.09001 * 109.46728 * 245.00052 * 3 2 1 30 30 H 1.09003 * 109.46648 * 150.00463 * 5 4 3 31 31 H 1.08996 * 109.47529 * 30.00167 * 5 4 3 32 32 H 0.96996 * 120.00103 * 180.02562 * 9 8 6 33 33 H 1.08999 * 117.49938 * 359.97438 * 18 16 14 34 34 H 1.08999 * 117.49629 * 145.00932 * 18 16 14 35 35 H 1.09001 * 109.43969 * 39.55856 * 20 19 16 36 36 H 1.08996 * 109.43630 * 159.42758 * 20 19 16 37 37 H 1.08995 * 109.53908 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.53758 * 59.68741 * 21 20 19 39 39 H 1.09000 * 109.53978 * 184.35212 * 23 22 21 40 40 H 1.08996 * 109.54050 * 64.09620 * 23 22 21 41 41 H 1.09002 * 109.43509 * 200.57465 * 24 19 16 42 42 H 1.09003 * 109.43487 * 320.48034 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3590 0.8257 0.9693 6 6 4.3926 -0.6439 1.3017 7 1 3.4875 -1.1502 1.6031 8 6 5.5776 -1.3432 1.2151 9 7 6.6797 -0.7269 0.8476 10 14 5.6177 -3.1665 1.6196 11 1 4.7026 -3.8965 0.7059 12 1 7.0003 -3.6810 1.4496 13 1 5.1820 -3.3716 3.0243 14 6 2.5938 1.8222 2.3213 15 8 3.3640 1.8448 3.2578 16 6 1.1895 2.3434 2.4880 17 1 0.6031 2.4154 1.5720 18 6 0.9535 3.4058 3.5630 19 6 0.4475 1.9762 3.7756 20 6 1.1926 1.1130 4.7948 21 6 1.1294 -0.3564 4.3703 22 16 -0.6089 -0.8773 4.2937 23 6 -1.3318 0.3329 3.1485 24 6 -1.0608 1.7440 3.6763 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 5.0284 1.3651 1.6393 31 1 4.6810 0.9724 -0.0617 32 1 7.5133 -1.2190 0.7863 33 1 1.8137 3.7274 4.1501 34 1 0.2114 4.1764 3.3546 35 1 2.2338 1.4309 4.8472 36 1 0.7293 1.2276 5.7747 37 1 1.6614 -0.9692 5.0979 38 1 1.5884 -0.4723 3.3884 39 1 -2.4073 0.1705 3.0776 40 1 -0.8789 0.2188 2.1637 41 1 -1.5106 1.8549 4.6630 42 1 -1.4962 2.4752 2.9951 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451956490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:56 Heat of formation + Delta-G solvation = 5.113649 kcal Electronic energy + Delta-G solvation = -23186.276069 eV Core-core repulsion = 20065.638672 eV Total energy + Delta-G solvation = -3120.637397 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.14324 -37.55797 -35.68845 -33.18433 -32.37122 -31.98546 -31.49878 -27.86989 -25.96240 -24.89122 -23.69973 -23.13998 -21.84347 -19.92312 -19.47037 -17.97227 -16.90945 -16.54770 -16.43301 -15.24351 -14.92415 -14.71397 -14.44384 -14.14275 -13.97520 -13.69446 -13.46763 -13.15854 -12.89489 -12.74533 -12.48496 -12.20361 -11.99176 -11.96075 -11.60416 -11.24534 -11.21336 -10.98778 -10.87386 -10.58865 -10.42095 -10.23319 -10.12299 -9.85038 -9.60987 -9.48414 -9.15187 -8.81029 -8.45543 -7.73629 -7.49424 -6.07035 -4.11422 1.97835 2.48287 2.73003 3.00281 3.29920 3.34616 3.37947 3.86442 4.02965 4.41542 4.67157 4.75135 4.83581 4.88967 5.07688 5.16105 5.23709 5.28520 5.32428 5.40370 5.45688 5.55105 5.63783 5.65673 5.66496 5.76404 5.87775 5.92470 5.99732 6.08235 6.18822 6.25173 6.34404 6.55707 6.92365 6.94397 7.05452 7.39445 7.49952 7.88906 8.19848 8.35993 8.86630 9.05114 9.53708 11.01092 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.006267 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.097873 B = 4466.735479 C = 4833.163844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C 0.137 3.863 4 N -0.590 5.590 5 C 0.246 3.754 6 C -0.522 4.522 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.895 5.895 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.538 3.462 15 O -0.536 6.536 16 C -0.184 4.184 17 H 0.115 0.885 18 C -0.139 4.139 19 C -0.101 4.101 20 C -0.097 4.097 21 C -0.067 4.067 22 S -0.283 6.283 23 C -0.085 4.085 24 C -0.080 4.080 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.044 6.201 1.472 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.162 4.162 3 C 0.013 3.987 4 N -0.320 5.320 5 C 0.127 3.873 6 C -0.561 4.561 7 H 0.076 0.924 8 C -0.139 4.139 9 N -0.534 5.534 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.326 3.674 15 O -0.415 6.415 16 C -0.205 4.205 17 H 0.133 0.867 18 C -0.176 4.176 19 C -0.102 4.102 20 C -0.136 4.136 21 C -0.215 4.215 22 S -0.057 6.057 23 C -0.233 4.233 24 C -0.118 4.118 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.139 0.861 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.877 5.311 2.421 16.916 hybrid contribution 0.640 -0.262 -0.712 0.992 sum -15.237 5.049 1.709 16.142 Atomic orbital electron populations 1.23667 0.95813 1.01151 1.04170 1.23620 0.95816 1.00365 0.96388 1.20627 0.92424 0.94505 0.91124 1.48134 1.14791 1.60020 1.09104 1.19321 0.76029 0.94416 0.97501 1.21354 0.94767 0.93925 1.46052 0.92446 1.24906 0.95416 0.98467 0.95148 1.69911 0.99487 1.36390 1.47562 0.86635 0.77057 0.85106 0.79126 1.20246 1.21186 1.20143 1.19262 0.87127 0.78109 0.82941 1.90583 1.54928 1.57197 1.38779 1.22620 0.96967 1.06064 0.94852 0.86698 1.23100 1.03121 0.90922 1.00465 1.21504 0.93985 0.98116 0.96557 1.21504 1.03324 0.91971 0.96753 1.23346 0.92730 0.99152 1.06229 1.86552 1.11476 1.45433 1.62206 1.23457 1.03194 0.95552 1.01057 1.21288 0.92922 0.95505 1.02132 0.88650 0.89258 0.86062 0.91277 0.89730 0.93810 0.95073 0.92672 0.87565 0.88330 0.87150 0.90954 0.88053 0.89172 0.88282 0.88836 0.90141 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.63 11.99 29.02 0.35 -2.28 16 2 C -0.14 -2.21 9.85 -36.02 -0.35 -2.56 16 3 C 0.14 2.16 5.64 -5.19 -0.03 2.13 16 4 N -0.59 -11.92 2.44 -176.43 -0.43 -12.36 16 5 C 0.25 6.19 5.20 -5.19 -0.03 6.17 16 6 C -0.52 -14.19 9.28 -34.44 -0.32 -14.51 16 7 H 0.06 1.56 7.45 -52.49 -0.39 1.17 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 10 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.54 10.58 6.29 -10.98 -0.07 10.51 16 15 O -0.54 -12.49 13.39 5.56 0.07 -12.42 16 16 C -0.18 -2.68 5.31 -91.74 -0.49 -3.17 16 17 H 0.12 1.46 5.91 -51.93 -0.31 1.15 16 18 C -0.14 -1.74 9.41 -26.68 -0.25 -1.99 16 19 C -0.10 -1.33 1.76 -154.46 -0.27 -1.60 16 20 C -0.10 -1.48 4.84 -26.72 -0.13 -1.61 16 21 C -0.07 -1.10 6.42 37.20 0.24 -0.86 16 22 S -0.28 -4.12 22.25 -107.50 -2.39 -6.51 16 23 C -0.08 -0.99 6.47 37.20 0.24 -0.75 16 24 C -0.08 -0.85 5.46 -26.73 -0.15 -1.00 16 25 H 0.10 1.14 8.06 -52.49 -0.42 0.72 16 26 H 0.09 0.94 7.84 -52.49 -0.41 0.53 16 27 H 0.12 2.21 7.59 -52.48 -0.40 1.81 16 28 H 0.07 0.89 5.56 -51.93 -0.29 0.60 16 29 H 0.08 1.30 7.89 -51.93 -0.41 0.89 16 30 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 31 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 32 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 33 H 0.11 1.49 7.91 -51.93 -0.41 1.08 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.11 2.00 5.46 -51.93 -0.28 1.72 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 38 H 0.09 1.76 7.40 -51.93 -0.38 1.38 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.15 5.61 -51.93 -0.29 0.86 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -30.35 344.68 -9.66 -40.00 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.46 Total: 4.71 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -1.35 Total: -9.87 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.31 Total: -37.75 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -2.39 Total: -6.51 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.35 -9.66 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451956490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.116 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds