Wall clock time and date at job start Tue Mar 31 2020 08:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99981 * 2 1 4 4 N 1.46499 * 109.47245 * 125.00359 * 3 2 1 5 5 C 1.46499 * 119.99949 * 89.99809 * 4 3 2 6 6 C 1.50706 * 109.47286 * 269.99933 * 5 4 3 7 7 H 1.08001 * 119.99991 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99706 * 179.72744 * 6 5 4 9 9 N 1.31509 * 120.00399 * 0.27526 * 8 6 5 10 10 Si 1.86799 * 119.99729 * 180.27975 * 8 6 5 11 11 H 1.48500 * 109.47312 * 59.99674 * 10 8 6 12 12 H 1.48497 * 109.47340 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47269 * 299.99701 * 10 8 6 14 14 C 1.34775 * 119.99993 * 270.00397 * 4 3 2 15 15 O 1.21277 * 120.00199 * 180.02562 * 14 4 3 16 16 C 1.50708 * 120.00061 * 359.97438 * 14 4 3 17 17 H 1.08997 * 115.54355 * 352.04867 * 16 14 4 18 18 C 1.52972 * 117.49376 * 206.39793 * 16 14 4 19 19 C 1.53089 * 117.49449 * 137.72657 * 16 14 4 20 20 C 1.52931 * 117.37319 * 0.23443 * 19 16 14 21 21 C 1.53081 * 109.68813 * 279.49054 * 20 19 16 22 22 S 1.81629 * 109.05461 * 299.81556 * 21 20 19 23 23 C 1.81627 * 102.49941 * 55.77269 * 22 21 20 24 24 C 1.52931 * 117.37636 * 214.77665 * 19 16 14 25 25 H 1.07997 * 119.99844 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.00075 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00239 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.46855 * 5.00178 * 3 2 1 29 29 H 1.09001 * 109.46728 * 245.00052 * 3 2 1 30 30 H 1.09003 * 109.46648 * 150.00463 * 5 4 3 31 31 H 1.08996 * 109.47529 * 30.00167 * 5 4 3 32 32 H 0.96996 * 120.00103 * 180.02562 * 9 8 6 33 33 H 1.08999 * 117.49938 * 359.97438 * 18 16 14 34 34 H 1.08999 * 117.49629 * 145.00932 * 18 16 14 35 35 H 1.09001 * 109.43969 * 39.55856 * 20 19 16 36 36 H 1.08996 * 109.43630 * 159.42758 * 20 19 16 37 37 H 1.08995 * 109.53908 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.53758 * 59.68741 * 21 20 19 39 39 H 1.09000 * 109.53978 * 184.35212 * 23 22 21 40 40 H 1.08996 * 109.54050 * 64.09620 * 23 22 21 41 41 H 1.09002 * 109.43509 * 200.57465 * 24 19 16 42 42 H 1.09003 * 109.43487 * 320.48034 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3590 0.8257 0.9693 6 6 4.3926 -0.6439 1.3017 7 1 3.4875 -1.1502 1.6031 8 6 5.5776 -1.3432 1.2151 9 7 6.6797 -0.7269 0.8476 10 14 5.6177 -3.1665 1.6196 11 1 4.7026 -3.8965 0.7059 12 1 7.0003 -3.6810 1.4496 13 1 5.1820 -3.3716 3.0243 14 6 2.5938 1.8222 2.3213 15 8 3.3640 1.8448 3.2578 16 6 1.1895 2.3434 2.4880 17 1 0.6031 2.4154 1.5720 18 6 0.9535 3.4058 3.5630 19 6 0.4475 1.9762 3.7756 20 6 1.1926 1.1130 4.7948 21 6 1.1294 -0.3564 4.3703 22 16 -0.6089 -0.8773 4.2937 23 6 -1.3318 0.3329 3.1485 24 6 -1.0608 1.7440 3.6763 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 5.0284 1.3651 1.6393 31 1 4.6810 0.9724 -0.0617 32 1 7.5133 -1.2190 0.7863 33 1 1.8137 3.7274 4.1501 34 1 0.2114 4.1764 3.3546 35 1 2.2338 1.4309 4.8472 36 1 0.7293 1.2276 5.7747 37 1 1.6614 -0.9692 5.0979 38 1 1.5884 -0.4723 3.3884 39 1 -2.4073 0.1705 3.0776 40 1 -0.8789 0.2188 2.1637 41 1 -1.5106 1.8549 4.6630 42 1 -1.4962 2.4752 2.9951 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451956490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:55 Heat of formation + Delta-G solvation = -11.573869 kcal Electronic energy + Delta-G solvation = -23186.999694 eV Core-core repulsion = 20065.638672 eV Total energy + Delta-G solvation = -3121.361022 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47416 -38.88307 -37.17128 -35.09746 -33.70112 -33.35579 -32.57353 -29.78689 -27.23001 -26.37889 -25.14937 -24.21089 -23.36518 -21.15112 -20.62117 -19.31374 -18.64128 -18.27590 -17.63337 -16.99575 -16.26779 -16.09581 -15.81081 -15.45456 -15.33520 -14.81243 -14.71731 -14.41461 -14.24937 -14.13597 -13.87765 -13.62714 -13.48139 -13.18800 -13.10548 -12.88556 -12.71601 -12.47638 -12.31608 -12.27487 -12.03506 -11.64179 -11.46306 -11.30179 -10.90225 -10.66264 -10.61488 -10.40794 -10.19859 -9.43865 -8.64096 -8.24040 -6.36391 0.86003 1.30648 1.33740 1.34767 1.41504 1.60930 1.67502 2.29767 2.47651 2.86426 3.05717 3.58050 3.65905 3.78039 3.79845 3.95748 4.02980 4.13342 4.18104 4.23865 4.40876 4.48899 4.53751 4.57537 4.74505 4.76698 4.82048 4.88509 4.97200 5.00550 5.04579 5.10793 5.18116 5.21499 5.23634 5.38609 5.56787 5.78079 5.83857 5.88858 6.05941 6.69984 6.81739 7.28527 7.52051 8.82948 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.006267 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.097873 B = 4466.735479 C = 4833.163844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.180 4.180 3 C 0.137 3.863 4 N -0.598 5.598 5 C 0.263 3.737 6 C -0.526 4.526 7 H 0.050 0.950 8 C 0.010 3.990 9 N -0.928 5.928 10 Si 0.955 3.045 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.280 1.280 14 C 0.528 3.472 15 O -0.588 6.588 16 C -0.190 4.190 17 H 0.147 0.853 18 C -0.121 4.121 19 C -0.097 4.097 20 C -0.095 4.095 21 C -0.064 4.064 22 S -0.295 6.295 23 C -0.079 4.079 24 C -0.072 4.072 25 H 0.104 0.896 26 H 0.126 0.874 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.080 0.920 30 H -0.003 1.003 31 H 0.020 0.980 32 H 0.266 0.734 33 H 0.082 0.918 34 H 0.145 0.855 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.130 0.870 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.614 7.117 0.974 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.199 4.199 3 C 0.015 3.985 4 N -0.327 5.327 5 C 0.142 3.858 6 C -0.565 4.565 7 H 0.069 0.931 8 C -0.188 4.188 9 N -0.568 5.568 10 Si 0.780 3.220 11 H -0.188 1.188 12 H -0.202 1.202 13 H -0.206 1.206 14 C 0.318 3.682 15 O -0.469 6.469 16 C -0.211 4.211 17 H 0.164 0.836 18 C -0.158 4.158 19 C -0.098 4.098 20 C -0.134 4.134 21 C -0.212 4.212 22 S -0.070 6.070 23 C -0.226 4.226 24 C -0.110 4.110 25 H 0.122 0.878 26 H 0.144 0.856 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.098 0.902 30 H 0.016 0.984 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.163 0.837 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.148 0.852 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.486 6.229 1.895 21.495 hybrid contribution 2.008 -0.541 -0.540 2.148 sum -18.478 5.688 1.355 19.381 Atomic orbital electron populations 1.23943 0.94361 1.03237 0.98947 1.23259 0.96935 0.98477 1.01271 1.20863 0.92209 0.96262 0.89190 1.48114 1.13628 1.59855 1.11141 1.18721 0.78752 0.93102 0.95264 1.21572 0.94526 0.94992 1.45369 0.93140 1.25733 0.95131 1.02858 0.95118 1.70026 1.00010 1.38056 1.48725 0.85663 0.77599 0.80120 0.78661 1.18811 1.20238 1.20569 1.20239 0.89118 0.77069 0.81733 1.90565 1.56977 1.59063 1.40323 1.22554 0.93654 1.07905 0.96990 0.83570 1.23240 1.03094 0.91332 0.98105 1.21612 0.95558 0.98153 0.94427 1.21415 1.01794 0.91562 0.98618 1.23126 0.94515 1.00091 1.03488 1.86570 1.09207 1.47561 1.63613 1.23648 1.04446 0.94965 0.99550 1.21343 0.90171 0.95556 1.03955 0.87816 0.85568 0.90174 0.87139 0.90194 0.98440 0.96235 0.92522 0.89899 0.83734 0.90924 0.89421 0.89678 0.93048 0.85167 0.89210 0.88887 0.87021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 11.99 67.78 0.81 -2.73 16 2 C -0.18 -5.42 9.85 25.65 0.25 -5.17 16 3 C 0.14 4.21 5.64 85.63 0.48 4.69 16 4 N -0.60 -25.12 2.44 -830.49 -2.03 -27.14 16 5 C 0.26 14.21 5.20 85.64 0.45 14.66 16 6 C -0.53 -30.33 9.28 25.60 0.24 -30.10 16 7 H 0.05 2.92 7.45 -2.91 -0.02 2.90 16 8 C 0.01 0.61 5.46 84.65 0.46 1.07 16 9 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 10 Si 0.95 46.06 29.54 68.60 2.03 48.09 16 11 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 14 C 0.53 21.35 6.29 87.66 0.55 21.90 16 15 O -0.59 -29.35 13.39 -3.02 -0.04 -29.39 16 16 C -0.19 -5.06 5.31 -11.52 -0.06 -5.12 16 17 H 0.15 2.91 5.91 -2.39 -0.01 2.89 16 18 C -0.12 -2.62 9.41 30.63 0.29 -2.34 16 19 C -0.10 -2.27 1.76 -52.15 -0.09 -2.36 16 20 C -0.10 -2.92 4.84 30.60 0.15 -2.77 16 21 C -0.06 -2.18 6.42 72.01 0.46 -1.71 16 22 S -0.30 -8.07 22.25 -56.49 -1.26 -9.33 16 23 C -0.08 -1.44 6.47 72.01 0.47 -0.98 16 24 C -0.07 -1.11 5.46 30.60 0.17 -0.95 16 25 H 0.10 2.07 8.06 -2.91 -0.02 2.04 16 26 H 0.13 1.79 7.84 -2.91 -0.02 1.77 16 27 H 0.08 3.07 7.59 -2.91 -0.02 3.04 16 28 H 0.11 2.43 5.56 -2.39 -0.01 2.42 16 29 H 0.08 2.47 7.89 -2.39 -0.02 2.46 16 30 H 0.00 -0.16 7.42 -2.39 -0.02 -0.17 16 31 H 0.02 1.08 7.89 -2.39 -0.02 1.06 16 32 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 33 H 0.08 2.25 7.91 -2.39 -0.02 2.23 16 34 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 2.82 5.46 -2.39 -0.01 2.81 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.05 2.12 7.40 -2.39 -0.02 2.10 16 39 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.09 1.74 5.61 -2.39 -0.01 1.73 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.11 1.01 8.08 -2.39 -0.02 0.99 16 Total: -1.00 -74.16 344.68 4.61 -69.55 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 1.00 Total: 16.59 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 4.62 Total: -11.90 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -1.74 Total: -83.61 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.04 Total: -29.39 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.26 Total: -9.33 kcal Total: -74.16 4.61 -69.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451956490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.977 kcal (2) G-P(sol) polarization free energy of solvation -74.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds