Wall clock time and date at job start Tue Mar 31 2020 07:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47233 * 2 1 4 4 C 1.50701 * 109.47347 * 239.99884 * 2 1 3 5 5 H 1.07999 * 120.00107 * 241.35227 * 4 2 1 6 6 C 1.37880 * 119.99700 * 61.34457 * 4 2 1 7 7 N 1.31518 * 119.99858 * 193.97960 * 6 4 2 8 8 Si 1.86800 * 120.00127 * 13.98076 * 6 4 2 9 9 H 1.48504 * 109.47117 * 84.54549 * 8 6 4 10 10 H 1.48503 * 109.47106 * 204.54693 * 8 6 4 11 11 H 1.48502 * 109.47073 * 324.54652 * 8 6 4 12 12 C 1.53003 * 109.47090 * 119.99894 * 2 1 3 13 13 N 1.46498 * 109.47243 * 299.99704 * 12 2 1 14 14 C 1.34768 * 120.00210 * 179.97438 * 13 12 2 15 15 O 1.21285 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00321 * 180.02562 * 14 13 12 17 17 O 1.42897 * 109.47356 * 180.02562 * 16 14 13 18 18 C 1.35952 * 117.00342 * 179.97438 * 17 16 14 19 19 C 1.38709 * 120.02514 * 0.27287 * 18 17 16 20 20 C 1.38149 * 119.96487 * 180.25128 * 19 18 17 21 21 C 1.38454 * 120.03292 * 359.47243 * 20 19 18 22 22 F 1.35099 * 119.96966 * 180.29843 * 21 20 19 23 23 C 1.38458 * 120.05842 * 0.27646 * 21 20 19 24 24 C 1.38149 * 120.02752 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.47046 * 309.36777 * 1 2 3 26 26 H 1.09003 * 109.47530 * 69.36851 * 1 2 3 27 27 H 1.08998 * 109.47336 * 189.36714 * 1 2 3 28 28 H 1.08997 * 109.47351 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47055 * 300.00036 * 3 2 1 30 30 H 1.09002 * 109.46953 * 59.99972 * 3 2 1 31 31 H 0.96996 * 119.99875 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47084 * 180.02562 * 12 2 1 33 33 H 1.08994 * 109.47055 * 60.00100 * 12 2 1 34 34 H 0.97003 * 119.99622 * 0.02562 * 13 12 2 35 35 H 1.09000 * 109.47793 * 59.99714 * 16 14 13 36 36 H 1.09008 * 109.46698 * 300.00148 * 16 14 13 37 37 H 1.07998 * 120.01977 * 0.02725 * 19 18 17 38 38 H 1.08006 * 119.98501 * 179.74983 * 20 19 18 39 39 H 1.07998 * 119.98028 * 179.97438 * 23 21 20 40 40 H 1.08003 * 120.01065 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6351 -1.6011 -1.1315 6 6 1.7222 -0.2234 -2.4825 7 7 1.9157 -0.9726 -3.5460 8 14 1.0275 1.5006 -2.6684 9 1 2.1416 2.4817 -2.7084 10 1 0.2469 1.5865 -3.9288 11 1 0.1417 1.8043 -1.5159 12 6 2.0399 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.5741 -1.4774 3.7808 16 6 1.3741 0.2188 4.8999 17 8 1.8505 -0.4547 6.0667 18 6 1.4853 0.0619 7.2700 19 6 0.6805 1.1902 7.3255 20 6 0.3145 1.7172 8.5490 21 6 0.7416 1.1133 9.7194 22 9 0.3779 1.6262 10.9151 23 6 1.5407 -0.0161 9.6654 24 6 1.9125 -0.5421 8.4433 25 1 -0.3633 0.6519 0.7945 26 1 -0.3634 0.3621 -0.9618 27 1 -0.3634 -1.0139 0.1673 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6979 -0.6299 -4.4268 32 1 3.1299 -0.7208 1.2495 33 1 1.6766 -1.7489 1.2493 34 1 0.9937 0.7579 2.3564 35 1 0.2841 0.2189 4.8997 36 1 1.7375 1.2465 4.9002 37 1 0.3431 1.6587 6.4128 38 1 -0.3089 2.5982 8.5925 39 1 1.8735 -0.4859 10.5791 40 1 2.5355 -1.4234 8.4015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457984865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:33 Heat of formation + Delta-G solvation = -78.377571 kcal Electronic energy + Delta-G solvation = -22876.462074 eV Core-core repulsion = 19185.991050 eV Total energy + Delta-G solvation = -3690.471024 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.12191 -40.60409 -39.34135 -37.48587 -36.64842 -33.48051 -31.75008 -31.56862 -30.19728 -28.53126 -26.48091 -25.75666 -24.83569 -23.46495 -22.51403 -20.44968 -19.31816 -18.75334 -17.67538 -17.44474 -16.59163 -16.47183 -16.13040 -15.81389 -15.43189 -15.18379 -14.89198 -14.65925 -14.21892 -13.97855 -13.40374 -13.36760 -13.33217 -12.99897 -12.72158 -12.55380 -12.51129 -12.28025 -12.12057 -11.43379 -11.26227 -11.18399 -10.52477 -10.39348 -10.24769 -10.14766 -9.69715 -9.58029 -9.19746 -8.76274 -8.70833 -8.52071 -8.44736 -6.20304 -4.18207 0.76890 0.85594 2.46706 2.69812 3.18445 3.20265 3.25162 3.33984 3.67927 3.96936 4.28306 4.29702 4.38620 4.59494 4.75506 4.81933 4.82661 4.95272 5.09936 5.19568 5.48911 5.66631 5.72706 5.78598 5.84538 5.95314 5.96618 6.25600 6.30457 6.37748 6.42311 6.53338 6.60309 6.62579 6.85062 6.97854 7.12916 7.34360 7.64801 7.71311 8.34121 8.41308 8.85000 9.42989 10.92724 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.038966 B = 0.002593 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.411455 B =10797.752702 C =11305.564485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.029 3.971 3 C -0.149 4.149 4 C -0.515 4.515 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.889 5.889 8 Si 0.886 3.114 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.143 3.857 13 N -0.717 5.717 14 C 0.508 3.492 15 O -0.523 6.523 16 C 0.038 3.962 17 O -0.283 6.283 18 C 0.125 3.875 19 C -0.184 4.184 20 C -0.111 4.111 21 C 0.054 3.946 22 F -0.143 7.143 23 C -0.112 4.112 24 C -0.121 4.121 25 H 0.021 0.979 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.029 0.971 31 H 0.265 0.735 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 7.287 22.664 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 C -0.206 4.206 4 C -0.553 4.553 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.526 5.526 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.021 3.979 13 N -0.370 5.370 14 C 0.291 3.709 15 O -0.399 6.399 16 C -0.041 4.041 17 O -0.195 6.195 18 C 0.079 3.921 19 C -0.203 4.203 20 C -0.130 4.130 21 C 0.035 3.965 22 F -0.122 7.122 23 C -0.131 4.131 24 C -0.139 4.139 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.232 0.768 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.160 0.840 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.917 6.366 22.514 23.722 hybrid contribution -0.828 1.723 -0.237 1.926 sum -4.745 8.089 22.277 24.171 Atomic orbital electron populations 1.22311 0.97800 0.99899 1.00047 1.18727 0.92551 0.92280 0.93688 1.22376 1.01305 0.98270 0.98607 1.20698 1.34236 1.12413 0.87922 0.90474 1.24980 0.94656 0.97314 0.95784 1.69948 1.47974 1.35903 0.98759 0.87291 0.79329 0.85518 0.76038 1.21321 1.23357 1.17541 1.21586 0.98818 0.95901 0.81555 1.46171 1.53157 1.32095 1.05602 1.19862 0.81642 0.85216 0.84148 1.90752 1.37011 1.25640 1.86452 1.22612 1.00395 0.96995 0.84086 1.86212 1.70085 1.52121 1.11107 1.19121 0.94378 0.92690 0.85893 1.21170 1.02409 0.97903 0.98844 1.20936 1.00654 1.00664 0.90741 1.17586 1.01826 0.96295 0.80806 1.91490 1.90420 1.86530 1.43716 1.20972 0.98064 0.95310 0.98707 1.20330 1.02912 1.01946 0.88750 0.95969 0.92421 0.93306 0.92687 0.93941 0.95221 0.92485 0.91677 0.91571 0.76770 0.88930 0.88957 0.84277 0.84403 0.83979 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 7.53 37.15 0.28 -2.46 16 2 C 0.03 0.59 0.50 -155.66 -0.08 0.52 16 3 C -0.15 -2.83 7.52 37.16 0.28 -2.55 16 4 C -0.51 -13.40 8.62 -34.44 -0.30 -13.70 16 5 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 6 C 0.08 2.05 5.32 -17.82 -0.09 1.95 16 7 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 8 Si 0.89 20.43 22.79 -169.99 -3.87 16.55 16 9 H -0.29 -6.58 7.10 56.52 0.40 -6.17 16 10 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.25 -5.16 4.65 56.52 0.26 -4.89 16 12 C 0.14 2.70 4.49 -4.04 -0.02 2.68 16 13 N -0.72 -10.56 5.00 -60.30 -0.30 -10.87 16 14 C 0.51 7.65 7.91 -10.99 -0.09 7.56 16 15 O -0.52 -10.37 16.50 -14.36 -0.24 -10.61 16 16 C 0.04 0.40 5.22 36.00 0.19 0.58 16 17 O -0.28 -3.58 9.67 -39.50 -0.38 -3.97 16 18 C 0.13 1.30 6.69 -39.24 -0.26 1.04 16 19 C -0.18 -1.54 9.04 -39.44 -0.36 -1.90 16 20 C -0.11 -0.90 10.02 -39.53 -0.40 -1.30 16 21 C 0.05 0.49 7.30 -39.42 -0.29 0.20 16 22 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 23 C -0.11 -0.93 10.02 -39.53 -0.40 -1.33 16 24 C -0.12 -1.13 9.98 -39.44 -0.39 -1.52 16 25 H 0.02 0.34 7.13 -51.93 -0.37 -0.03 16 26 H 0.06 1.19 4.30 -51.93 -0.22 0.97 16 27 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 30 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 31 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.40 4.76 6.26 -40.82 -0.26 4.50 16 35 H 0.09 0.72 7.65 -51.93 -0.40 0.32 16 36 H 0.09 0.71 7.67 -51.92 -0.40 0.31 16 37 H 0.14 0.85 6.30 -52.49 -0.33 0.52 16 38 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -31.88 325.63 -6.09 -37.98 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.10 Total: 2.90 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -1.92 Total: -10.22 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.47 Total: -36.18 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.62 Total: -14.57 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -3.87 Total: 16.55 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.88 -6.09 -37.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457984865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.399 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds