Wall clock time and date at job start Tue Mar 31 2020 07:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47233 * 2 1 4 4 C 1.50701 * 109.47347 * 239.99884 * 2 1 3 5 5 H 1.07999 * 120.00107 * 241.35227 * 4 2 1 6 6 C 1.37880 * 119.99700 * 61.34457 * 4 2 1 7 7 N 1.31518 * 119.99858 * 193.97960 * 6 4 2 8 8 Si 1.86800 * 120.00127 * 13.98076 * 6 4 2 9 9 H 1.48504 * 109.47117 * 84.54549 * 8 6 4 10 10 H 1.48503 * 109.47106 * 204.54693 * 8 6 4 11 11 H 1.48502 * 109.47073 * 324.54652 * 8 6 4 12 12 C 1.53003 * 109.47090 * 119.99894 * 2 1 3 13 13 N 1.46498 * 109.47243 * 299.99704 * 12 2 1 14 14 C 1.34768 * 120.00210 * 179.97438 * 13 12 2 15 15 O 1.21285 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00321 * 180.02562 * 14 13 12 17 17 O 1.42897 * 109.47356 * 180.02562 * 16 14 13 18 18 C 1.35952 * 117.00342 * 179.97438 * 17 16 14 19 19 C 1.38709 * 120.02514 * 0.27287 * 18 17 16 20 20 C 1.38149 * 119.96487 * 180.25128 * 19 18 17 21 21 C 1.38454 * 120.03292 * 359.47243 * 20 19 18 22 22 F 1.35099 * 119.96966 * 180.29843 * 21 20 19 23 23 C 1.38458 * 120.05842 * 0.27646 * 21 20 19 24 24 C 1.38149 * 120.02752 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.47046 * 309.36777 * 1 2 3 26 26 H 1.09003 * 109.47530 * 69.36851 * 1 2 3 27 27 H 1.08998 * 109.47336 * 189.36714 * 1 2 3 28 28 H 1.08997 * 109.47351 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47055 * 300.00036 * 3 2 1 30 30 H 1.09002 * 109.46953 * 59.99972 * 3 2 1 31 31 H 0.96996 * 119.99875 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47084 * 180.02562 * 12 2 1 33 33 H 1.08994 * 109.47055 * 60.00100 * 12 2 1 34 34 H 0.97003 * 119.99622 * 0.02562 * 13 12 2 35 35 H 1.09000 * 109.47793 * 59.99714 * 16 14 13 36 36 H 1.09008 * 109.46698 * 300.00148 * 16 14 13 37 37 H 1.07998 * 120.01977 * 0.02725 * 19 18 17 38 38 H 1.08006 * 119.98501 * 179.74983 * 20 19 18 39 39 H 1.07998 * 119.98028 * 179.97438 * 23 21 20 40 40 H 1.08003 * 120.01065 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6351 -1.6011 -1.1315 6 6 1.7222 -0.2234 -2.4825 7 7 1.9157 -0.9726 -3.5460 8 14 1.0275 1.5006 -2.6684 9 1 2.1416 2.4817 -2.7084 10 1 0.2469 1.5865 -3.9288 11 1 0.1417 1.8043 -1.5159 12 6 2.0399 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.5741 -1.4774 3.7808 16 6 1.3741 0.2188 4.8999 17 8 1.8505 -0.4547 6.0667 18 6 1.4853 0.0619 7.2700 19 6 0.6805 1.1902 7.3255 20 6 0.3145 1.7172 8.5490 21 6 0.7416 1.1133 9.7194 22 9 0.3779 1.6262 10.9151 23 6 1.5407 -0.0161 9.6654 24 6 1.9125 -0.5421 8.4433 25 1 -0.3633 0.6519 0.7945 26 1 -0.3634 0.3621 -0.9618 27 1 -0.3634 -1.0139 0.1673 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6979 -0.6299 -4.4268 32 1 3.1299 -0.7208 1.2495 33 1 1.6766 -1.7489 1.2493 34 1 0.9937 0.7579 2.3564 35 1 0.2841 0.2189 4.8997 36 1 1.7375 1.2465 4.9002 37 1 0.3431 1.6587 6.4128 38 1 -0.3089 2.5982 8.5925 39 1 1.8735 -0.4859 10.5791 40 1 2.5355 -1.4234 8.4015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457984865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:33 Heat of formation + Delta-G solvation = -100.042659 kcal Electronic energy + Delta-G solvation = -22877.401542 eV Core-core repulsion = 19185.991050 eV Total energy + Delta-G solvation = -3691.410492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.81013 -41.45329 -40.47237 -38.56281 -37.90570 -35.04946 -33.50245 -32.29649 -30.97289 -29.45200 -27.99125 -27.27893 -26.61153 -24.14833 -23.23623 -21.66161 -20.96297 -19.47147 -18.57353 -18.37631 -18.02399 -17.44489 -17.40078 -16.84910 -16.54774 -16.52682 -15.90708 -15.63028 -15.29666 -14.91585 -14.69715 -14.64171 -14.46344 -14.14553 -14.02824 -13.92839 -13.73182 -13.35366 -13.31245 -12.89872 -12.38712 -12.16634 -11.94935 -11.91918 -11.87749 -11.74644 -11.09997 -10.90125 -10.61024 -10.37466 -10.18070 -10.06498 -9.13902 -8.29280 -6.31475 0.16620 0.19314 1.37673 1.39682 1.52961 1.55231 1.56226 2.36149 2.56701 2.69297 3.07123 3.33745 3.57967 3.79227 3.82864 4.03823 4.09107 4.14319 4.19599 4.33781 4.34105 4.43153 4.57934 4.77075 4.84567 4.87951 4.91682 4.95969 5.08619 5.12204 5.15171 5.18035 5.21528 5.41108 5.53970 5.67900 5.73141 5.82058 6.26525 6.30734 6.59072 6.73851 7.23952 7.33564 8.88051 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.038966 B = 0.002593 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.411455 B =10797.752702 C =11305.564485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.028 3.972 3 C -0.149 4.149 4 C -0.520 4.520 5 H 0.025 0.975 6 C 0.013 3.987 7 N -0.948 5.948 8 Si 0.947 3.053 9 H -0.282 1.282 10 H -0.318 1.318 11 H -0.197 1.197 12 C 0.158 3.842 13 N -0.702 5.702 14 C 0.506 3.494 15 O -0.581 6.581 16 C 0.044 3.956 17 O -0.316 6.316 18 C 0.108 3.892 19 C -0.178 4.178 20 C -0.110 4.110 21 C 0.039 3.961 22 F -0.150 7.150 23 C -0.112 4.112 24 C -0.135 4.135 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.417 0.583 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.169 0.831 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.764 10.919 25.021 28.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.206 4.206 4 C -0.558 4.558 5 H 0.043 0.957 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.776 3.224 9 H -0.210 1.210 10 H -0.248 1.248 11 H -0.121 1.121 12 C 0.034 3.966 13 N -0.356 5.356 14 C 0.292 3.708 15 O -0.460 6.460 16 C -0.034 4.034 17 O -0.229 6.229 18 C 0.062 3.938 19 C -0.196 4.196 20 C -0.128 4.128 21 C 0.020 3.980 22 F -0.128 7.128 23 C -0.130 4.130 24 C -0.154 4.154 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.256 0.744 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.187 0.813 38 H 0.179 0.821 39 H 0.176 0.824 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.173 10.038 24.925 27.571 hybrid contribution -0.055 0.450 -0.894 1.002 sum -6.229 10.488 24.032 26.950 Atomic orbital electron populations 1.22239 0.95806 1.00794 1.01167 1.18659 0.93972 0.93205 0.91500 1.22314 1.01020 0.96620 1.00601 1.21057 1.32916 1.11077 0.90724 0.95681 1.25924 0.95440 1.01839 0.95185 1.70125 1.50767 1.38419 0.99448 0.86316 0.79428 0.79595 0.77093 1.20962 1.24795 1.12089 1.21055 0.97450 0.95050 0.83055 1.45831 1.53141 1.32298 1.04359 1.20749 0.80268 0.84433 0.85350 1.90737 1.39583 1.28387 1.87291 1.22699 1.02284 0.97313 0.81089 1.86157 1.71096 1.53452 1.12201 1.19314 0.95553 0.93804 0.85113 1.21439 1.01264 0.96882 1.00053 1.21227 1.00310 1.01088 0.90198 1.17856 1.02343 0.96757 0.81056 1.91474 1.90530 1.86631 1.44204 1.21131 0.97697 0.95198 0.99016 1.20473 1.03390 1.02320 0.89190 0.90855 0.93681 0.94130 0.93576 0.94707 0.90086 0.92725 0.93895 0.94100 0.74437 0.85209 0.85173 0.81338 0.82135 0.82431 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 7.53 71.98 0.54 -4.41 16 2 C 0.03 1.10 0.50 -52.93 -0.03 1.08 16 3 C -0.15 -5.09 7.52 71.98 0.54 -4.54 16 4 C -0.52 -27.97 8.62 25.60 0.22 -27.75 16 5 H 0.02 1.55 7.99 -2.91 -0.02 1.53 16 6 C 0.01 0.74 5.32 84.65 0.45 1.19 16 7 N -0.95 -58.29 13.96 21.45 0.30 -57.99 16 8 Si 0.95 41.21 22.79 68.60 1.56 42.77 16 9 H -0.28 -12.07 7.10 99.48 0.71 -11.36 16 10 H -0.32 -14.48 7.11 99.48 0.71 -13.77 16 11 H -0.20 -6.99 4.65 99.48 0.46 -6.53 16 12 C 0.16 5.90 4.49 86.38 0.39 6.29 16 13 N -0.70 -18.42 5.00 -463.08 -2.32 -20.74 16 14 C 0.51 14.07 7.91 87.66 0.69 14.76 16 15 O -0.58 -23.14 16.50 15.99 0.26 -22.87 16 16 C 0.04 0.73 5.22 71.23 0.37 1.10 16 17 O -0.32 -7.29 9.67 -73.97 -0.72 -8.00 16 18 C 0.11 1.97 6.69 22.49 0.15 2.12 16 19 C -0.18 -2.24 9.04 22.36 0.20 -2.04 16 20 C -0.11 -1.39 10.02 22.30 0.22 -1.16 16 21 C 0.04 0.62 7.30 22.37 0.16 0.79 16 22 F -0.15 -2.65 17.27 44.97 0.78 -1.87 16 23 C -0.11 -1.69 10.02 22.30 0.22 -1.47 16 24 C -0.14 -2.37 9.98 22.36 0.22 -2.14 16 25 H 0.07 1.80 7.13 -2.39 -0.02 1.79 16 26 H 0.04 1.68 4.30 -2.39 -0.01 1.67 16 27 H 0.04 1.46 8.12 -2.39 -0.02 1.44 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.03 1.26 2.25 -2.38 -0.01 1.25 16 30 H 0.08 1.94 6.86 -2.39 -0.02 1.92 16 31 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.42 7.52 6.26 -92.71 -0.58 6.94 16 35 H 0.13 1.23 7.65 -2.39 -0.02 1.21 16 36 H 0.13 1.22 7.67 -2.38 -0.02 1.20 16 37 H 0.17 1.01 6.30 -2.91 -0.02 1.00 16 38 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -76.23 325.63 4.49 -71.74 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.25 Total: 13.18 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 4.37 Total: -16.21 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -2.02 Total: -78.74 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.45 Total: -30.87 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.56 Total: 42.77 kcal Total: -76.23 4.49 -71.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457984865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.304 kcal (2) G-P(sol) polarization free energy of solvation -76.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds