Wall clock time and date at job start Tue Mar 31 2020 06:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47149 * 2 1 4 4 S 1.70619 * 124.52179 * 270.02886 * 3 2 1 5 5 C 1.75836 * 91.56229 * 179.97438 * 4 3 2 6 6 C 1.46581 * 125.45977 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99893 * 180.02562 * 6 5 4 8 8 N 1.34773 * 119.99878 * 0.03292 * 6 5 4 9 9 C 1.46496 * 120.00133 * 179.72035 * 8 6 5 10 10 C 1.52998 * 109.47329 * 180.26769 * 9 8 6 11 11 C 1.53002 * 109.47584 * 300.00315 * 10 9 8 12 12 C 1.53005 * 109.46919 * 60.00079 * 10 9 8 13 13 C 1.50701 * 109.47477 * 179.97438 * 10 9 8 14 14 H 1.08009 * 119.99651 * 1.35372 * 13 10 9 15 15 C 1.37868 * 120.00338 * 181.34830 * 13 10 9 16 16 N 1.31521 * 120.00453 * 193.97821 * 15 13 10 17 17 Si 1.86801 * 120.00217 * 13.98060 * 15 13 10 18 18 H 1.48505 * 109.47124 * 84.54309 * 17 15 13 19 19 H 1.48497 * 109.47512 * 204.54782 * 17 15 13 20 20 H 1.48505 * 109.46983 * 324.55043 * 17 15 13 21 21 C 1.36648 * 109.08126 * 0.24452 * 5 4 3 22 22 C 1.33816 * 124.52339 * 90.00088 * 3 2 1 23 23 C 1.50703 * 122.44789 * 0.04714 * 22 3 2 24 24 H 1.09003 * 109.47003 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47160 * 300.00034 * 1 2 3 26 26 H 1.08997 * 109.47224 * 59.99945 * 1 2 3 27 27 H 1.08998 * 109.47160 * 239.99966 * 2 1 3 28 28 H 1.08997 * 109.47224 * 120.00055 * 2 1 3 29 29 H 0.97008 * 120.00021 * 359.97438 * 8 6 5 30 30 H 1.08999 * 109.47000 * 300.27268 * 9 8 6 31 31 H 1.09007 * 109.47232 * 60.27146 * 9 8 6 32 32 H 1.08998 * 109.47272 * 69.36560 * 11 10 9 33 33 H 1.08992 * 109.47141 * 189.36621 * 11 10 9 34 34 H 1.09004 * 109.46813 * 309.36431 * 11 10 9 35 35 H 1.09008 * 109.47129 * 59.99910 * 12 10 9 36 36 H 1.09004 * 109.47084 * 179.97438 * 12 10 9 37 37 H 1.08999 * 109.47102 * 300.00253 * 12 10 9 38 38 H 0.96991 * 120.00307 * 180.02562 * 16 15 13 39 39 H 1.08001 * 123.35086 * 179.76305 * 21 5 4 40 40 H 1.08998 * 109.47549 * 89.99820 * 23 22 3 41 41 H 1.09006 * 109.47066 * 210.00287 * 23 22 3 42 42 H 1.09005 * 109.47217 * 329.99314 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3540 2.3327 -1.4058 5 6 2.8455 3.7238 -0.4491 6 6 3.2998 5.0089 -0.9883 7 8 3.6178 5.9077 -0.2320 8 7 3.3650 5.1951 -2.3215 9 6 3.8132 6.4815 -2.8604 10 6 3.7887 6.4304 -4.3893 11 6 4.7214 5.3202 -4.8776 12 6 2.3634 6.1459 -4.8673 13 6 4.2491 7.7539 -4.9437 14 1 4.5518 8.5445 -4.2729 15 6 4.2841 7.9557 -6.3071 16 7 4.9333 8.9864 -6.8030 17 14 3.4092 6.7651 -7.4502 18 1 1.9790 7.1485 -7.5638 19 1 4.0424 6.8119 -8.7926 20 1 3.5106 5.3884 -6.9028 21 6 2.7419 3.4128 0.8775 22 6 2.2852 2.1358 1.1025 23 6 2.0896 1.5797 2.4894 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.1117 4.4785 -2.9243 30 1 3.1487 7.2724 -2.5125 31 1 4.8287 6.6842 -2.5199 32 1 4.2983 4.3498 -4.6179 33 1 4.8339 5.3897 -5.9594 34 1 5.6966 5.4301 -4.4031 35 1 1.6988 6.9369 -4.5195 36 1 2.3458 6.1099 -5.9566 37 1 2.0299 5.1888 -4.4663 38 1 4.9575 9.1285 -7.7621 39 1 2.9909 4.1026 1.6702 40 1 3.0116 1.1036 2.8234 41 1 1.8305 2.3889 3.1722 42 1 1.2852 0.8442 2.4759 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457986641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:59 Heat of formation + Delta-G solvation = -11.432100 kcal Electronic energy + Delta-G solvation = -21488.973346 eV Core-core repulsion = 18367.618472 eV Total energy + Delta-G solvation = -3121.354874 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.63453 -38.56628 -36.70304 -33.99940 -33.36245 -31.55705 -30.49845 -27.80192 -26.49116 -26.32287 -25.08471 -23.93581 -22.52845 -20.50574 -19.38940 -18.59409 -17.92838 -16.37100 -16.13590 -15.56593 -15.15218 -14.94618 -14.60712 -14.48217 -14.22158 -13.66998 -13.29676 -13.22237 -12.93141 -12.87833 -12.64382 -12.42164 -12.35515 -12.21898 -12.06337 -11.86310 -11.59574 -11.40298 -11.30820 -10.91177 -10.46088 -10.34372 -10.18958 -10.08632 -9.77100 -9.14771 -8.82322 -8.70596 -8.61406 -8.49009 -8.42159 -6.15888 -4.13432 0.45383 1.36673 1.79285 2.27020 3.23171 3.30247 3.37796 3.41631 3.52561 4.34474 4.39669 4.67431 4.84400 4.92646 5.05904 5.10677 5.14670 5.21347 5.38869 5.45909 5.49095 5.60588 5.67900 5.70993 5.83903 5.87751 6.02373 6.03335 6.17434 6.31875 6.33893 6.45566 6.49971 6.60401 6.66967 6.71183 6.92356 7.18630 7.40357 7.69979 7.82076 8.41208 8.48419 8.89293 9.47820 10.97167 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.027101 B = 0.003685 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.941839 B = 7596.458178 C = 8347.732376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C -0.202 4.202 4 S 0.194 5.806 5 C -0.253 4.253 6 C 0.581 3.419 7 O -0.536 6.536 8 N -0.717 5.717 9 C 0.142 3.858 10 C 0.028 3.972 11 C -0.143 4.143 12 C -0.149 4.149 13 C -0.513 4.513 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.890 5.890 17 Si 0.884 3.116 18 H -0.285 1.285 19 H -0.305 1.305 20 H -0.249 1.249 21 C -0.056 4.056 22 C -0.120 4.120 23 C -0.092 4.092 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.394 0.606 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.021 0.979 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.028 0.972 38 H 0.265 0.735 39 H 0.152 0.848 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.048 -20.130 13.260 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.321 4.321 4 S 0.464 5.536 5 C -0.374 4.374 6 C 0.366 3.634 7 O -0.415 6.415 8 N -0.367 5.367 9 C 0.020 3.980 10 C 0.027 3.973 11 C -0.200 4.200 12 C -0.206 4.206 13 C -0.551 4.551 14 H 0.095 0.905 15 C -0.127 4.127 16 N -0.527 5.527 17 Si 0.717 3.283 18 H -0.213 1.213 19 H -0.233 1.233 20 H -0.175 1.175 21 C -0.089 4.089 22 C -0.133 4.133 23 C -0.151 4.151 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.229 0.771 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.169 0.831 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.840 -19.623 12.012 24.307 hybrid contribution -0.507 -0.522 0.428 0.844 sum -8.347 -20.146 12.440 25.105 Atomic orbital electron populations 1.21796 0.94172 1.02017 1.02672 1.20111 0.96284 0.89510 1.03352 1.24016 1.08694 1.02040 0.97395 1.83047 1.60314 1.02647 1.07588 1.24712 1.15237 0.99479 0.97967 1.16968 0.78246 0.85408 0.82803 1.90810 1.49786 1.42743 1.58158 1.46222 1.66950 1.17953 1.05578 1.21588 0.99510 0.82150 0.94755 1.18735 0.91826 0.96616 0.90152 1.22307 0.99745 0.96146 1.01846 1.22375 0.99266 0.98973 0.99936 1.20702 1.44822 0.97216 0.92385 0.90454 1.24964 0.94421 0.95266 0.98017 1.69948 1.39713 1.30068 1.12978 0.87310 0.79319 0.82793 0.78897 1.21290 1.23332 1.17496 1.20596 0.97288 0.95734 0.95307 1.18641 1.04236 0.94002 0.96411 1.20505 1.01968 1.00973 0.91683 0.91966 0.92198 0.92306 0.90708 0.89877 0.77138 0.91625 0.91512 0.96032 0.92380 0.93281 0.92659 0.93908 0.95295 0.92525 0.83071 0.91295 0.91359 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.60 16 2 C -0.05 -0.39 5.72 -27.88 -0.16 -0.54 16 3 C -0.20 -2.02 5.53 -35.86 -0.20 -2.22 16 4 S 0.19 2.21 22.10 -107.50 -2.38 -0.16 16 5 C -0.25 -3.67 6.45 -36.79 -0.24 -3.90 16 6 C 0.58 10.35 7.78 -12.90 -0.10 10.25 16 7 O -0.54 -11.30 16.84 5.19 0.09 -11.21 16 8 N -0.72 -12.58 5.00 -61.65 -0.31 -12.89 16 9 C 0.14 2.91 4.49 -4.04 -0.02 2.89 16 10 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 11 C -0.14 -2.94 7.53 37.16 0.28 -2.66 16 12 C -0.15 -3.05 7.52 37.16 0.28 -2.77 16 13 C -0.51 -13.82 8.62 -34.44 -0.30 -14.12 16 14 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 15 C 0.08 2.11 5.32 -17.82 -0.09 2.02 16 16 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 17 Si 0.88 21.05 22.79 -169.99 -3.87 17.18 16 18 H -0.29 -6.76 7.10 56.52 0.40 -6.36 16 19 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.25 -5.39 4.65 56.52 0.26 -5.12 16 21 C -0.06 -0.73 9.80 -40.44 -0.40 -1.12 16 22 C -0.12 -1.26 5.78 -106.45 -0.62 -1.88 16 23 C -0.09 -0.70 9.55 36.01 0.34 -0.35 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.40 7.81 -51.93 -0.41 -0.01 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.50 7.25 -51.93 -0.38 0.13 16 29 H 0.39 6.18 5.37 -40.82 -0.22 5.96 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16 33 H 0.06 1.26 4.30 -51.93 -0.22 1.04 16 34 H 0.05 1.00 8.12 -51.93 -0.42 0.57 16 35 H 0.05 1.13 8.14 -51.92 -0.42 0.70 16 36 H 0.04 0.92 2.25 -51.93 -0.12 0.80 16 37 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 42 H 0.07 0.42 6.86 -51.93 -0.36 0.06 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -31.01 339.48 -7.85 -38.86 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.34 Total: 3.42 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -0.92 Total: -14.47 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.47 Total: -38.74 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -3.87 Total: 17.18 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.38 Total: -0.16 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.01 -7.85 -38.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.426 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds