Wall clock time and date at job start Tue Mar 31 2020 06:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47149 * 2 1 4 4 S 1.70619 * 124.52179 * 270.02886 * 3 2 1 5 5 C 1.75836 * 91.56229 * 179.97438 * 4 3 2 6 6 C 1.46581 * 125.45977 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99893 * 180.02562 * 6 5 4 8 8 N 1.34773 * 119.99878 * 0.03292 * 6 5 4 9 9 C 1.46496 * 120.00133 * 179.72035 * 8 6 5 10 10 C 1.52998 * 109.47329 * 180.26769 * 9 8 6 11 11 C 1.53002 * 109.47584 * 300.00315 * 10 9 8 12 12 C 1.53005 * 109.46919 * 60.00079 * 10 9 8 13 13 C 1.50701 * 109.47477 * 179.97438 * 10 9 8 14 14 H 1.08009 * 119.99651 * 1.35372 * 13 10 9 15 15 C 1.37868 * 120.00338 * 181.34830 * 13 10 9 16 16 N 1.31521 * 120.00453 * 193.97821 * 15 13 10 17 17 Si 1.86801 * 120.00217 * 13.98060 * 15 13 10 18 18 H 1.48505 * 109.47124 * 84.54309 * 17 15 13 19 19 H 1.48497 * 109.47512 * 204.54782 * 17 15 13 20 20 H 1.48505 * 109.46983 * 324.55043 * 17 15 13 21 21 C 1.36648 * 109.08126 * 0.24452 * 5 4 3 22 22 C 1.33816 * 124.52339 * 90.00088 * 3 2 1 23 23 C 1.50703 * 122.44789 * 0.04714 * 22 3 2 24 24 H 1.09003 * 109.47003 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47160 * 300.00034 * 1 2 3 26 26 H 1.08997 * 109.47224 * 59.99945 * 1 2 3 27 27 H 1.08998 * 109.47160 * 239.99966 * 2 1 3 28 28 H 1.08997 * 109.47224 * 120.00055 * 2 1 3 29 29 H 0.97008 * 120.00021 * 359.97438 * 8 6 5 30 30 H 1.08999 * 109.47000 * 300.27268 * 9 8 6 31 31 H 1.09007 * 109.47232 * 60.27146 * 9 8 6 32 32 H 1.08998 * 109.47272 * 69.36560 * 11 10 9 33 33 H 1.08992 * 109.47141 * 189.36621 * 11 10 9 34 34 H 1.09004 * 109.46813 * 309.36431 * 11 10 9 35 35 H 1.09008 * 109.47129 * 59.99910 * 12 10 9 36 36 H 1.09004 * 109.47084 * 179.97438 * 12 10 9 37 37 H 1.08999 * 109.47102 * 300.00253 * 12 10 9 38 38 H 0.96991 * 120.00307 * 180.02562 * 16 15 13 39 39 H 1.08001 * 123.35086 * 179.76305 * 21 5 4 40 40 H 1.08998 * 109.47549 * 89.99820 * 23 22 3 41 41 H 1.09006 * 109.47066 * 210.00287 * 23 22 3 42 42 H 1.09005 * 109.47217 * 329.99314 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3540 2.3327 -1.4058 5 6 2.8455 3.7238 -0.4491 6 6 3.2998 5.0089 -0.9883 7 8 3.6178 5.9077 -0.2320 8 7 3.3650 5.1951 -2.3215 9 6 3.8132 6.4815 -2.8604 10 6 3.7887 6.4304 -4.3893 11 6 4.7214 5.3202 -4.8776 12 6 2.3634 6.1459 -4.8673 13 6 4.2491 7.7539 -4.9437 14 1 4.5518 8.5445 -4.2729 15 6 4.2841 7.9557 -6.3071 16 7 4.9333 8.9864 -6.8030 17 14 3.4092 6.7651 -7.4502 18 1 1.9790 7.1485 -7.5638 19 1 4.0424 6.8119 -8.7926 20 1 3.5106 5.3884 -6.9028 21 6 2.7419 3.4128 0.8775 22 6 2.2852 2.1358 1.1025 23 6 2.0896 1.5797 2.4894 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.1117 4.4785 -2.9243 30 1 3.1487 7.2724 -2.5125 31 1 4.8287 6.6842 -2.5199 32 1 4.2983 4.3498 -4.6179 33 1 4.8339 5.3897 -5.9594 34 1 5.6966 5.4301 -4.4031 35 1 1.6988 6.9369 -4.5195 36 1 2.3458 6.1099 -5.9566 37 1 2.0299 5.1888 -4.4663 38 1 4.9575 9.1285 -7.7621 39 1 2.9909 4.1026 1.6702 40 1 3.0116 1.1036 2.8234 41 1 1.8305 2.3889 3.1722 42 1 1.2852 0.8442 2.4759 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457986641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:59 Heat of formation + Delta-G solvation = -31.238513 kcal Electronic energy + Delta-G solvation = -21489.832216 eV Core-core repulsion = 18367.618472 eV Total energy + Delta-G solvation = -3122.213745 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99096 -39.55747 -38.37110 -35.10243 -34.69813 -33.49529 -31.31730 -28.67318 -28.07249 -27.70832 -27.03861 -25.09524 -23.27298 -21.79330 -21.05360 -19.70669 -19.02459 -18.08361 -17.45524 -17.12564 -16.61703 -16.48411 -15.60518 -15.35184 -15.21943 -14.94796 -14.74918 -14.61464 -14.37511 -14.06402 -14.01586 -13.78657 -13.43794 -13.13133 -13.05044 -13.00272 -12.60034 -12.41802 -12.27696 -12.14802 -12.04332 -11.98576 -11.80920 -11.63724 -11.27242 -11.06230 -10.63797 -10.42768 -10.20991 -9.64391 -9.33360 -8.31406 -6.33730 -0.52701 0.44563 0.90139 1.32449 1.36115 1.37056 1.50378 2.12814 2.12994 2.33808 3.04267 3.69683 3.77756 4.02805 4.11111 4.20448 4.26854 4.35787 4.41846 4.46679 4.51821 4.68920 4.76521 4.80256 4.83845 4.86985 4.87880 4.94105 5.00580 5.03067 5.07328 5.09817 5.14666 5.31436 5.32623 5.42881 5.45928 5.55905 5.67761 5.74969 6.27026 6.44672 6.70264 7.08101 7.31217 8.85760 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.027101 B = 0.003685 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.941839 B = 7596.458178 C = 8347.732376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.056 4.056 3 C -0.185 4.185 4 S 0.223 5.777 5 C -0.297 4.297 6 C 0.581 3.419 7 O -0.581 6.581 8 N -0.708 5.708 9 C 0.156 3.844 10 C 0.027 3.973 11 C -0.142 4.142 12 C -0.149 4.149 13 C -0.520 4.520 14 H 0.029 0.971 15 C 0.018 3.982 16 N -0.945 5.945 17 Si 0.943 3.057 18 H -0.280 1.280 19 H -0.313 1.313 20 H -0.204 1.204 21 C -0.051 4.051 22 C -0.133 4.133 23 C -0.091 4.091 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.406 0.594 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.039 0.961 37 H 0.069 0.931 38 H 0.265 0.735 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.996 -24.913 13.604 30.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.305 4.305 4 S 0.493 5.507 5 C -0.417 4.417 6 C 0.369 3.631 7 O -0.463 6.463 8 N -0.359 5.359 9 C 0.033 3.967 10 C 0.026 3.974 11 C -0.200 4.200 12 C -0.205 4.205 13 C -0.558 4.558 14 H 0.047 0.953 15 C -0.179 4.179 16 N -0.584 5.584 17 Si 0.772 3.228 18 H -0.207 1.207 19 H -0.242 1.242 20 H -0.128 1.128 21 C -0.085 4.085 22 C -0.144 4.144 23 C -0.150 4.150 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.243 0.757 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.162 0.838 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.804 -24.453 12.369 29.104 hybrid contribution 0.114 0.961 0.472 1.076 sum -9.689 -23.492 12.840 28.472 Atomic orbital electron populations 1.21803 0.93400 1.03149 1.02245 1.20304 0.96787 0.87524 1.04851 1.24513 1.06348 1.03093 0.96537 1.82826 1.59580 1.00827 1.07493 1.24372 1.18711 0.99446 0.99216 1.17413 0.77100 0.86278 0.82275 1.90777 1.51779 1.44728 1.59036 1.45948 1.67015 1.16964 1.05945 1.21146 0.98066 0.83401 0.94104 1.18665 0.93515 0.94577 0.90619 1.22236 0.99339 0.97325 1.01054 1.22315 0.97505 1.01049 0.99660 1.20989 1.44198 0.98539 0.92044 0.95270 1.25851 0.94967 0.97290 0.99820 1.70107 1.42035 1.32905 1.13366 0.86348 0.77745 0.82744 0.75966 1.20712 1.24221 1.12817 1.20797 0.96246 0.96739 0.94714 1.18852 1.04339 0.93046 0.98207 1.20576 1.03145 1.01442 0.89800 0.90123 0.92336 0.93085 0.89594 0.88039 0.75694 0.93427 0.93608 0.91952 0.93187 0.93903 0.93249 0.94282 0.91247 0.92573 0.83794 0.90281 0.91177 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 71.98 0.71 -0.60 16 2 C -0.06 -0.55 5.72 29.85 0.17 -0.38 16 3 C -0.18 -3.06 5.53 24.68 0.14 -2.92 16 4 S 0.22 4.40 22.10 -56.49 -1.25 3.15 16 5 C -0.30 -8.28 6.45 24.08 0.16 -8.13 16 6 C 0.58 20.80 7.78 86.42 0.67 21.47 16 7 O -0.58 -25.44 16.84 -4.33 -0.07 -25.51 16 8 N -0.71 -24.24 5.00 -467.19 -2.34 -26.57 16 9 C 0.16 6.54 4.49 86.38 0.39 6.93 16 10 C 0.03 1.19 0.50 -52.93 -0.03 1.16 16 11 C -0.14 -5.53 7.53 71.98 0.54 -4.98 16 12 C -0.15 -5.69 7.52 71.98 0.54 -5.15 16 13 C -0.52 -29.01 8.62 25.60 0.22 -28.79 16 14 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 15 C 0.02 1.04 5.32 84.65 0.45 1.49 16 16 N -0.95 -58.86 13.96 21.44 0.30 -58.56 16 17 Si 0.94 42.67 22.79 68.60 1.56 44.23 16 18 H -0.28 -12.39 7.10 99.48 0.71 -11.68 16 19 H -0.31 -14.53 7.11 99.48 0.71 -13.83 16 20 H -0.20 -7.81 4.65 99.48 0.46 -7.34 16 21 C -0.05 -1.25 9.80 21.72 0.21 -1.04 16 22 C -0.13 -2.44 5.78 -21.05 -0.12 -2.56 16 23 C -0.09 -1.09 9.55 71.24 0.68 -0.41 16 24 H 0.08 0.45 8.14 -2.39 -0.02 0.44 16 25 H 0.06 0.55 7.81 -2.39 -0.02 0.53 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.10 0.72 7.25 -2.39 -0.02 0.70 16 29 H 0.41 11.63 5.37 -92.70 -0.50 11.14 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.06 1.91 7.13 -2.39 -0.02 1.89 16 33 H 0.05 2.02 4.30 -2.39 -0.01 2.01 16 34 H 0.04 1.69 8.12 -2.39 -0.02 1.67 16 35 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.04 1.54 2.25 -2.38 -0.01 1.53 16 37 H 0.07 2.09 6.86 -2.39 -0.02 2.07 16 38 H 0.27 15.53 8.31 -92.72 -0.77 14.76 16 39 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.82 8.13 -2.38 -0.02 0.80 16 42 H 0.08 0.71 6.86 -2.38 -0.02 0.70 16 Total: -1.00 -71.44 339.48 3.23 -68.21 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.28 Total: 18.96 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 4.73 Total: -23.91 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -2.04 Total: -85.13 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.07 Total: -25.51 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.56 Total: 44.23 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.25 Total: 3.15 kcal Total: -71.44 3.23 -68.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.975 kcal (2) G-P(sol) polarization free energy of solvation -71.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds