Wall clock time and date at job start Tue Mar 31 2020 07:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00361 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47491 * 119.99896 * 8 6 4 11 11 H 1.48511 * 109.47242 * 239.99873 * 8 6 4 12 12 C 1.52997 * 109.47337 * 119.99728 * 2 1 3 13 13 N 1.46499 * 109.47555 * 300.00682 * 12 2 1 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 C 1.38264 * 119.93461 * 269.72057 * 17 16 14 19 19 C 1.38179 * 120.09375 * 179.77027 * 18 17 16 20 20 C 1.38655 * 119.96828 * 0.50833 * 19 18 17 21 21 O 1.35961 * 120.06527 * 179.72648 * 20 19 18 22 22 C 1.38908 * 119.87626 * 359.74529 * 20 19 18 23 23 F 1.35102 * 120.04855 * 179.97438 * 22 20 19 24 24 C 1.38250 * 119.93793 * 90.00078 * 17 16 14 25 25 H 1.08993 * 109.47298 * 299.99321 * 1 2 3 26 26 H 1.09001 * 109.47411 * 60.00254 * 1 2 3 27 27 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47503 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47703 * 300.00482 * 3 2 1 30 30 H 1.09007 * 109.46685 * 60.00055 * 3 2 1 31 31 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47382 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.47216 * 60.00680 * 12 2 1 34 34 H 0.97000 * 119.99484 * 359.97438 * 13 12 2 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 37 37 H 1.08002 * 119.95263 * 0.02562 * 18 17 16 38 38 H 1.07997 * 120.01636 * 180.25143 * 19 18 17 39 39 H 0.96703 * 113.99576 * 270.02356 * 21 20 19 40 40 H 1.08005 * 119.98588 * 359.95352 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3214 -1.1201 -4.0079 9 1 3.1466 -2.2868 -3.6038 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1870 -4.8165 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5751 -1.4769 3.7807 16 6 1.3702 0.2159 4.9000 17 6 1.8686 -0.4974 6.1304 18 6 1.1164 -1.5127 6.6916 19 6 1.5725 -2.1721 7.8170 20 6 2.7813 -1.8082 8.3907 21 8 3.2293 -2.4520 9.5013 22 6 3.5335 -0.7845 7.8289 23 9 4.7115 -0.4268 8.3853 24 6 3.0744 -0.1314 6.6992 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6765 1.9563 0.8901 31 1 0.7081 1.1609 -3.4844 32 1 3.1300 -0.7208 1.2495 33 1 1.6768 -1.7489 1.2493 34 1 0.9942 0.7581 2.3564 35 1 1.7326 1.2439 4.9041 36 1 0.2803 0.2149 4.8959 37 1 0.1729 -1.7935 6.2474 38 1 0.9859 -2.9677 8.2520 39 1 2.9398 -2.0507 10.3321 40 1 3.6584 0.6646 6.2611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458047515.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:26 Heat of formation + Delta-G solvation = -111.845949 kcal Electronic energy + Delta-G solvation = -23140.731044 eV Core-core repulsion = 19448.808723 eV Total energy + Delta-G solvation = -3691.922322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.00403 -40.08776 -39.06721 -37.19504 -36.28259 -33.31786 -32.19507 -30.90714 -30.73007 -27.51340 -25.76496 -25.52912 -24.66469 -23.18007 -22.12321 -20.12033 -18.85717 -18.81136 -17.20185 -16.97028 -16.89794 -16.15506 -15.76952 -15.41018 -15.09335 -14.98559 -14.61764 -14.21421 -14.08849 -13.60522 -13.38744 -13.14358 -12.91528 -12.55692 -12.24096 -12.00732 -11.86336 -11.78266 -11.38262 -11.23009 -10.89880 -10.83242 -10.68313 -10.42373 -10.23089 -9.67296 -9.64536 -9.33100 -9.08772 -8.81788 -8.65849 -8.49160 -8.34823 -6.05113 -4.15038 0.83333 0.98040 2.98634 3.17188 3.25464 3.34278 3.39101 3.69857 3.85527 4.11725 4.38335 4.43667 4.55557 4.97319 5.03062 5.16823 5.21947 5.24365 5.34306 5.57674 5.75728 5.83409 5.95565 6.19958 6.26380 6.30003 6.47045 6.51781 6.74530 6.78076 6.89412 6.98142 6.98842 7.31014 7.31850 7.52117 7.66893 7.97708 8.00376 8.11955 8.35561 8.65270 8.86096 9.51113 10.96345 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.034284 B = 0.002743 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.512970 B =10205.366638 C =10289.051666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.132 3.868 13 N -0.717 5.717 14 C 0.504 3.496 15 O -0.544 6.544 16 C -0.107 4.107 17 C -0.035 4.035 18 C -0.099 4.099 19 C -0.115 4.115 20 C 0.067 3.933 21 O -0.489 6.489 22 C 0.075 3.925 23 F -0.135 7.135 24 C -0.126 4.126 25 H 0.006 0.994 26 H 0.086 0.914 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.086 0.914 30 H 0.006 0.994 31 H 0.259 0.741 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.398 0.602 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.389 0.611 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.628 1.436 20.093 20.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.009 3.991 13 N -0.367 5.367 14 C 0.289 3.711 15 O -0.422 6.422 16 C -0.147 4.147 17 C -0.036 4.036 18 C -0.118 4.118 19 C -0.133 4.133 20 C 0.021 3.979 21 O -0.298 6.298 22 C 0.055 3.945 23 F -0.114 7.114 24 C -0.145 4.145 25 H 0.025 0.975 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.233 0.767 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.244 0.756 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.881 0.468 19.613 19.708 hybrid contribution 0.111 0.285 -0.510 0.595 sum -1.770 0.754 19.103 19.199 Atomic orbital electron populations 1.21833 0.97756 0.99179 1.00099 1.18357 0.92796 0.92752 0.90586 1.21836 0.98602 0.98354 1.00094 1.21034 1.31406 1.12104 0.89902 0.92392 1.24879 0.94850 0.94923 0.98879 1.69812 1.36714 1.22813 1.23142 0.86519 0.78655 0.79781 0.82959 1.19740 1.21044 1.21049 1.21722 0.98155 0.95791 0.83386 1.46315 1.52641 1.31839 1.05950 1.20324 0.81199 0.85028 0.84582 1.90717 1.38186 1.26403 1.86853 1.20744 1.03010 1.00379 0.90611 1.19191 0.93617 0.95980 0.94811 1.20977 1.00537 0.94982 0.95263 1.21254 0.94539 1.00277 0.97252 1.18411 0.93857 0.93878 0.91740 1.84903 1.75796 1.54381 1.14749 1.18020 0.83883 0.96714 0.95866 1.91490 1.44270 1.90981 1.84613 1.20936 0.96917 1.01682 0.94936 0.97479 0.89578 0.95446 0.95446 0.89579 0.97485 0.93053 0.92747 0.92718 0.76670 0.87747 0.87560 0.84814 0.84372 0.75581 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.51 -13.10 8.01 -34.44 -0.28 -13.38 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.29 9.35 55.43 0.52 -22.77 16 8 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.13 2.72 4.50 -4.04 -0.02 2.71 16 13 N -0.72 -11.85 4.96 -60.29 -0.30 -12.15 16 14 C 0.50 7.99 7.82 -10.98 -0.09 7.91 16 15 O -0.54 -10.98 16.03 5.55 0.09 -10.89 16 16 C -0.11 -1.14 5.83 -29.03 -0.17 -1.31 16 17 C -0.04 -0.41 4.37 -104.61 -0.46 -0.87 16 18 C -0.10 -1.05 9.69 -39.59 -0.38 -1.44 16 19 C -0.11 -1.17 9.98 -39.45 -0.39 -1.56 16 20 C 0.07 0.76 6.71 -39.18 -0.26 0.50 16 21 O -0.49 -4.99 13.37 -19.62 -0.26 -5.25 16 22 C 0.07 0.94 7.31 -39.30 -0.29 0.66 16 23 F -0.13 -1.80 17.11 2.25 0.04 -1.76 16 24 C -0.13 -1.52 9.67 -39.54 -0.38 -1.90 16 25 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 26 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 30 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 31 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.40 5.77 6.16 -40.82 -0.25 5.52 16 35 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.11 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.39 1.88 9.06 45.56 0.41 2.29 16 40 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 337.45 15.07 5.09 5.09 Total: -1.00 -31.22 337.45 -6.66 -37.88 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.52 Total: 5.32 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.29 Total: -11.01 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.22 Total: -34.92 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.17 Total: -16.14 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.22 -6.66 -37.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047515.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.968 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds