Wall clock time and date at job start Tue Mar 31 2020 07:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00361 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47491 * 119.99896 * 8 6 4 11 11 H 1.48511 * 109.47242 * 239.99873 * 8 6 4 12 12 C 1.52997 * 109.47337 * 119.99728 * 2 1 3 13 13 N 1.46499 * 109.47555 * 300.00682 * 12 2 1 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 C 1.38264 * 119.93461 * 269.72057 * 17 16 14 19 19 C 1.38179 * 120.09375 * 179.77027 * 18 17 16 20 20 C 1.38655 * 119.96828 * 0.50833 * 19 18 17 21 21 O 1.35961 * 120.06527 * 179.72648 * 20 19 18 22 22 C 1.38908 * 119.87626 * 359.74529 * 20 19 18 23 23 F 1.35102 * 120.04855 * 179.97438 * 22 20 19 24 24 C 1.38250 * 119.93793 * 90.00078 * 17 16 14 25 25 H 1.08993 * 109.47298 * 299.99321 * 1 2 3 26 26 H 1.09001 * 109.47411 * 60.00254 * 1 2 3 27 27 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47503 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47703 * 300.00482 * 3 2 1 30 30 H 1.09007 * 109.46685 * 60.00055 * 3 2 1 31 31 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47382 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.47216 * 60.00680 * 12 2 1 34 34 H 0.97000 * 119.99484 * 359.97438 * 13 12 2 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 37 37 H 1.08002 * 119.95263 * 0.02562 * 18 17 16 38 38 H 1.07997 * 120.01636 * 180.25143 * 19 18 17 39 39 H 0.96703 * 113.99576 * 270.02356 * 21 20 19 40 40 H 1.08005 * 119.98588 * 359.95352 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3214 -1.1201 -4.0079 9 1 3.1466 -2.2868 -3.6038 10 1 1.1661 -1.5865 -4.8161 11 1 3.1466 -0.1870 -4.8165 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5751 -1.4769 3.7807 16 6 1.3702 0.2159 4.9000 17 6 1.8686 -0.4974 6.1304 18 6 1.1164 -1.5127 6.6916 19 6 1.5725 -2.1721 7.8170 20 6 2.7813 -1.8082 8.3907 21 8 3.2293 -2.4520 9.5013 22 6 3.5335 -0.7845 7.8289 23 9 4.7115 -0.4268 8.3853 24 6 3.0744 -0.1314 6.6992 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6765 1.9563 0.8901 31 1 0.7081 1.1609 -3.4844 32 1 3.1300 -0.7208 1.2495 33 1 1.6768 -1.7489 1.2493 34 1 0.9942 0.7581 2.3564 35 1 1.7326 1.2439 4.9041 36 1 0.2803 0.2149 4.8959 37 1 0.1729 -1.7935 6.2474 38 1 0.9859 -2.9677 8.2520 39 1 2.9398 -2.0507 10.3321 40 1 3.6584 0.6646 6.2611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458047515.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:25 Heat of formation + Delta-G solvation = -132.593192 kcal Electronic energy + Delta-G solvation = -23141.630712 eV Core-core repulsion = 19448.808723 eV Total energy + Delta-G solvation = -3692.821990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.94895 -41.11229 -40.17844 -38.30222 -37.69379 -34.95548 -33.25510 -32.45960 -31.63887 -28.57024 -27.53205 -27.35299 -26.24134 -24.00843 -23.08862 -21.38957 -20.57501 -19.63223 -18.42980 -18.02154 -17.79699 -17.59979 -17.01545 -16.68942 -16.38368 -16.27033 -16.09590 -15.13457 -14.94099 -14.91714 -14.71570 -14.57601 -14.39062 -13.96193 -13.52787 -13.18259 -13.09429 -12.86467 -12.75621 -12.68862 -12.56377 -12.53114 -12.22166 -12.13567 -11.61962 -11.46026 -11.25269 -10.85750 -10.66152 -10.39260 -9.93590 -9.88691 -9.52696 -8.02470 -6.17725 -0.00018 0.15008 1.40464 1.45164 1.54140 1.76433 2.22894 2.45448 2.69865 2.96953 3.21232 3.30759 3.59435 3.78338 4.06825 4.21189 4.22989 4.44990 4.49043 4.55457 4.62387 4.75025 4.83302 4.95952 5.01993 5.04310 5.09089 5.13890 5.16941 5.22589 5.40568 5.45019 5.64125 5.68353 5.70192 5.75535 6.18698 6.24479 6.45257 6.70840 6.74540 6.87200 7.40617 7.50171 8.96291 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.034284 B = 0.002743 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.512970 B =10205.366638 C =10289.051666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.529 4.529 5 H 0.041 0.959 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.942 3.058 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.149 3.851 13 N -0.710 5.710 14 C 0.503 3.497 15 O -0.591 6.591 16 C -0.095 4.095 17 C -0.051 4.051 18 C -0.099 4.099 19 C -0.116 4.116 20 C 0.065 3.935 21 O -0.501 6.501 22 C 0.046 3.954 23 F -0.147 7.147 24 C -0.135 4.135 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.017 0.983 28 H 0.015 0.985 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.260 0.740 32 H 0.033 0.967 33 H 0.036 0.964 34 H 0.411 0.589 35 H 0.133 0.867 36 H 0.143 0.857 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.411 0.589 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 1.961 21.304 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.568 4.568 5 H 0.059 0.941 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.769 3.231 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.024 3.976 13 N -0.362 5.362 14 C 0.291 3.709 15 O -0.472 6.472 16 C -0.134 4.134 17 C -0.052 4.052 18 C -0.117 4.117 19 C -0.135 4.135 20 C 0.019 3.981 21 O -0.314 6.314 22 C 0.027 3.973 23 F -0.125 7.125 24 C -0.154 4.154 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.249 0.751 35 H 0.151 0.849 36 H 0.161 0.839 37 H 0.173 0.827 38 H 0.180 0.820 39 H 0.270 0.730 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.306 1.029 20.852 21.137 hybrid contribution 0.558 0.080 -0.817 0.993 sum -2.747 1.109 20.035 20.253 Atomic orbital electron populations 1.21672 0.96887 0.98706 1.00628 1.18347 0.93407 0.92980 0.90184 1.21682 0.97806 0.97862 1.00612 1.21332 1.31578 1.12091 0.91805 0.94052 1.25418 0.95183 0.95602 1.00860 1.69908 1.36987 1.23263 1.23509 0.85754 0.78158 0.78740 0.80427 1.20194 1.20642 1.20763 1.21207 0.96729 0.95060 0.84561 1.46119 1.52879 1.32055 1.05155 1.21231 0.79877 0.84339 0.85439 1.90704 1.40234 1.28726 1.87504 1.20769 1.05013 1.00716 0.86869 1.19375 0.93684 0.96739 0.95356 1.21327 1.01187 0.94207 0.95019 1.21540 0.94203 1.00632 0.97090 1.18593 0.94035 0.93323 0.92117 1.84834 1.76198 1.54735 1.15677 1.18326 0.84114 0.98054 0.96836 1.91451 1.44987 1.91229 1.84869 1.21112 0.97381 1.01944 0.94926 0.93846 0.92030 0.96368 0.96561 0.91991 0.93914 0.93040 0.94887 0.94567 0.75092 0.84918 0.83943 0.82660 0.82007 0.72968 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.08 71.98 0.58 -4.54 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 4 C -0.53 -27.78 8.01 25.60 0.21 -27.57 16 5 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 6 C 0.03 1.52 5.15 84.66 0.44 1.96 16 7 N -0.90 -47.16 9.35 21.45 0.20 -46.96 16 8 Si 0.94 42.42 29.54 68.60 2.03 44.44 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 C 0.15 6.10 4.50 86.38 0.39 6.49 16 13 N -0.71 -21.94 4.96 -463.06 -2.30 -24.24 16 14 C 0.50 14.89 7.82 87.66 0.69 15.57 16 15 O -0.59 -23.47 16.03 -3.04 -0.05 -23.51 16 16 C -0.09 -1.66 5.83 29.10 0.17 -1.49 16 17 C -0.05 -1.06 4.37 -19.86 -0.09 -1.14 16 18 C -0.10 -1.83 9.69 22.26 0.22 -1.61 16 19 C -0.12 -2.11 9.98 22.36 0.22 -1.89 16 20 C 0.06 1.41 6.71 22.53 0.15 1.56 16 21 O -0.50 -9.59 13.37 -93.11 -1.24 -10.84 16 22 C 0.05 1.14 7.31 22.45 0.16 1.31 16 23 F -0.15 -3.94 17.11 44.97 0.77 -3.17 16 24 C -0.13 -3.10 9.67 22.29 0.22 -2.89 16 25 H 0.04 1.47 6.86 -2.39 -0.02 1.46 16 26 H 0.06 2.94 6.07 -2.39 -0.01 2.92 16 27 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 30 H 0.04 1.47 6.86 -2.38 -0.02 1.46 16 31 H 0.26 13.14 8.31 -92.70 -0.77 12.36 16 32 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.41 10.42 6.16 -92.71 -0.57 9.85 16 35 H 0.13 1.64 8.08 -2.38 -0.02 1.62 16 36 H 0.14 1.53 8.08 -2.39 -0.02 1.51 16 37 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.41 3.35 9.06 -74.06 -0.67 2.68 16 40 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -68.76 337.45 3.15 -65.61 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -0.16 Total: 15.26 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 3.90 Total: -16.60 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -2.10 Total: -71.19 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -1.29 Total: -34.35 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.77 Total: -3.17 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -68.76 3.15 -65.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047515.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.982 kcal (2) G-P(sol) polarization free energy of solvation -68.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds