Wall clock time and date at job start Tue Mar 31 2020 07:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 109.46862 * 2 1 4 4 C 1.76203 * 102.99972 * 109.05528 * 2 1 3 5 5 C 1.38234 * 120.00235 * 90.00017 * 4 2 1 6 6 C 1.38234 * 120.00240 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00037 * 0.26327 * 6 5 4 8 8 C 1.50693 * 120.00207 * 179.72405 * 7 6 5 9 9 N 1.46901 * 109.47201 * 89.99355 * 8 7 6 10 10 C 1.46900 * 110.99924 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46977 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47287 * 300.00145 * 11 10 9 13 13 C 1.52994 * 109.47143 * 60.00693 * 11 10 9 14 14 C 1.50701 * 109.47119 * 180.02562 * 11 10 9 15 15 H 1.08000 * 119.99941 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00321 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99880 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 120.00291 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47188 * 59.99526 * 18 16 14 20 20 H 1.48495 * 109.47054 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46617 * 299.99690 * 18 16 14 22 22 C 1.38238 * 119.99752 * 359.47832 * 7 6 5 23 23 C 1.38234 * 120.00033 * 0.49775 * 22 7 6 24 24 H 1.09002 * 109.47402 * 310.94368 * 1 2 3 25 25 H 1.08995 * 109.47434 * 70.94719 * 1 2 3 26 26 H 1.09001 * 109.47284 * 190.94928 * 1 2 3 27 27 H 1.07999 * 119.99751 * 359.97438 * 5 4 2 28 28 H 1.08002 * 119.99744 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.47097 * 209.99342 * 8 7 6 30 30 H 1.09001 * 109.47081 * 329.99847 * 8 7 6 31 31 H 1.00894 * 111.00648 * 303.95689 * 9 8 7 32 32 H 1.08993 * 109.47637 * 300.00269 * 10 9 8 33 33 H 1.09001 * 109.46926 * 60.00690 * 10 9 8 34 34 H 1.08998 * 109.47092 * 60.00065 * 12 11 10 35 35 H 1.09000 * 109.46844 * 179.97438 * 12 11 10 36 36 H 1.08993 * 109.47458 * 300.00128 * 12 11 10 37 37 H 1.08998 * 109.47584 * 59.99662 * 13 11 10 38 38 H 1.08997 * 109.47445 * 180.02562 * 13 11 10 39 39 H 1.09003 * 109.47126 * 299.99862 * 13 11 10 40 40 H 0.97000 * 120.00480 * 180.02562 * 17 16 14 41 41 H 1.07999 * 119.99934 * 180.25938 * 22 7 6 42 42 H 1.08001 * 120.00294 * 179.76453 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2103 -0.5605 1.6228 5 6 2.3658 -1.9119 1.8686 6 6 2.6773 -2.3516 3.1416 7 6 2.8279 -1.4403 4.1700 8 6 3.1614 -1.9201 5.5591 9 7 4.6204 -1.9735 5.7216 10 6 4.9835 -2.4376 7.0673 11 6 6.5073 -2.4806 7.1980 12 6 7.0818 -3.4412 6.1550 13 6 7.0784 -1.0796 6.9705 14 6 6.8798 -2.9572 8.5783 15 1 6.1070 -3.2051 9.2908 16 6 8.2072 -3.0769 8.9315 17 7 9.1483 -2.7755 8.0636 18 14 8.6689 -3.6684 10.6422 19 1 8.1152 -5.0287 10.8618 20 1 10.1479 -3.7100 10.7691 21 1 8.1107 -2.7372 11.6552 22 6 2.6777 -0.0885 3.9231 23 6 2.3667 0.3512 2.6500 24 1 -0.3634 0.6734 0.7762 25 1 -0.3634 0.3354 -0.9713 26 1 -0.3634 -1.0090 0.1952 27 1 2.2439 -2.6242 1.0660 28 1 2.7984 -3.4075 3.3336 29 1 2.7390 -1.2327 6.2920 30 1 2.7423 -2.9150 5.7102 31 1 5.0423 -2.5542 5.0125 32 1 4.5738 -1.7536 7.8104 33 1 4.5770 -3.4359 7.2293 34 1 6.8123 -3.0969 5.1565 35 1 8.1674 -3.4715 6.2479 36 1 6.6749 -4.4393 6.3171 37 1 6.6691 -0.3952 7.7136 38 1 8.1640 -1.1103 7.0631 39 1 6.8090 -0.7352 5.9720 40 1 10.0821 -2.8600 8.3119 41 1 2.7995 0.6238 4.7257 42 1 2.2456 1.4071 2.4579 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459727574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:16 Heat of formation + Delta-G solvation = -17.805399 kcal Electronic energy + Delta-G solvation = -21056.024225 eV Core-core repulsion = 17934.392984 eV Total energy + Delta-G solvation = -3121.631241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.36791 -36.90453 -35.91990 -34.27604 -31.77598 -31.02542 -30.14897 -29.06335 -25.85909 -25.57159 -25.18882 -23.19784 -22.82466 -21.27916 -18.48510 -18.27425 -16.84666 -16.04204 -15.75686 -15.42025 -15.05024 -14.81617 -14.43227 -14.22149 -14.08937 -13.80781 -13.47677 -13.22958 -12.92510 -12.65750 -12.34108 -12.22243 -12.10529 -11.95011 -11.42940 -11.17713 -11.08363 -10.98801 -10.65796 -10.62563 -10.38031 -10.19132 -10.07275 -9.40105 -9.26535 -9.03099 -8.99122 -8.64960 -8.56752 -8.29730 -7.77083 -5.91860 -4.02700 0.78970 1.33624 1.69708 2.48563 3.31916 3.36990 3.39229 3.51453 3.75823 4.43076 4.69479 4.78470 4.87234 4.89385 4.95934 5.06480 5.33292 5.33433 5.35237 5.62154 5.64946 5.67654 5.87353 5.98473 6.15545 6.21408 6.29519 6.33835 6.59314 6.69220 6.86386 6.88261 7.05745 7.14850 7.37157 7.44556 7.67029 7.74747 7.81520 7.90818 8.19655 8.33340 8.54314 8.98467 9.62323 11.08647 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.040971 B = 0.002617 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.250187 B =10695.049528 C =10845.999834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.331 4.669 3 O -0.859 6.859 4 C -0.468 4.468 5 C -0.046 4.046 6 C -0.134 4.134 7 C -0.033 4.033 8 C 0.088 3.912 9 N -0.680 5.680 10 C 0.075 3.925 11 C 0.070 3.930 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.508 4.508 15 H 0.051 0.949 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.889 3.111 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.113 4.113 23 C -0.055 4.055 24 H 0.080 0.920 25 H 0.103 0.897 26 H 0.109 0.891 27 H 0.134 0.866 28 H 0.126 0.874 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.340 0.660 32 H 0.057 0.943 33 H 0.014 0.986 34 H 0.010 0.990 35 H 0.084 0.916 36 H 0.019 0.981 37 H 0.018 0.982 38 H 0.074 0.926 39 H 0.020 0.980 40 H 0.259 0.741 41 H 0.126 0.874 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.396 -0.524 -16.685 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.528 4.472 3 O -0.855 6.855 4 C -0.565 4.565 5 C -0.065 4.065 6 C -0.153 4.153 7 C -0.034 4.034 8 C -0.041 4.041 9 N -0.312 5.312 10 C -0.053 4.053 11 C 0.069 3.931 12 C -0.190 4.190 13 C -0.178 4.178 14 C -0.547 4.547 15 H 0.069 0.931 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.717 3.283 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.133 4.133 23 C -0.074 4.074 24 H 0.099 0.901 25 H 0.122 0.878 26 H 0.128 0.872 27 H 0.152 0.848 28 H 0.144 0.856 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.159 0.841 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.102 0.898 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.144 0.856 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.529 0.424 -17.248 23.213 hybrid contribution -0.834 -0.029 2.801 2.923 sum -16.363 0.396 -14.447 21.832 Atomic orbital electron populations 1.27782 1.22922 1.07808 1.07058 1.69387 0.85713 0.99547 0.92536 1.93111 1.73043 1.37247 1.82098 1.27491 1.13455 0.99720 1.15828 1.20751 0.95467 0.93436 0.96834 1.21201 1.01448 0.99713 0.92972 1.20177 0.93884 0.93555 0.95754 1.20995 0.91396 0.99328 0.92385 1.60650 1.05398 1.58673 1.06503 1.22199 0.99859 0.95954 0.87303 1.18081 0.87305 0.93221 0.94463 1.21839 1.04737 0.97213 0.95258 1.21647 1.03161 0.96347 0.96607 1.21062 0.91752 1.44287 0.97610 0.93057 1.24887 0.96558 0.95293 0.96812 1.69822 0.99876 1.48622 1.33986 0.86711 0.77219 0.79225 0.85102 1.20470 1.21337 1.20405 1.21162 0.99620 0.95502 0.97013 1.21081 0.94662 0.99230 0.92419 0.90120 0.87842 0.87174 0.84814 0.85606 0.90467 0.94739 0.84110 0.92465 0.96731 0.97069 0.89760 0.96192 0.96320 0.90690 0.96128 0.93091 0.85589 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.09 10.70 101.05 1.08 -2.01 16 2 S 1.33 10.08 14.19 -107.50 -1.53 8.56 16 3 O -0.86 -12.51 16.90 -35.23 -0.60 -13.10 16 4 C -0.47 -4.90 5.61 -39.58 -0.22 -5.13 16 5 C -0.05 -0.41 9.75 -39.58 -0.39 -0.80 16 6 C -0.13 -1.48 9.70 -39.58 -0.38 -1.87 16 7 C -0.03 -0.44 5.39 -104.63 -0.56 -1.00 16 8 C 0.09 1.27 5.81 -4.98 -0.03 1.25 16 9 N -0.68 -12.08 5.70 -115.06 -0.66 -12.74 16 10 C 0.07 1.55 4.59 -3.82 -0.02 1.53 16 11 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 12 C -0.13 -3.12 7.92 37.16 0.29 -2.83 16 13 C -0.12 -2.96 8.09 37.15 0.30 -2.66 16 14 C -0.51 -13.66 8.01 -34.44 -0.28 -13.94 16 15 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 16 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 17 N -0.88 -24.55 9.35 55.43 0.52 -24.03 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.11 -1.55 9.70 -39.58 -0.38 -1.94 16 23 C -0.05 -0.73 9.44 -39.58 -0.37 -1.10 16 24 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 28 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 30 H 0.03 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.34 5.99 6.76 -39.29 -0.27 5.72 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 35 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 2.03 6.07 -51.93 -0.32 1.71 16 39 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.12 1.71 7.45 -52.49 -0.39 1.32 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -33.99 351.37 -9.76 -43.75 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.63 Total: 3.40 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -1.14 Total: -27.21 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.14 Total: -36.77 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.60 Total: -13.10 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 10.08 SS G_CDS: -1.53 Total: 8.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.99 -9.76 -43.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459727574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.942 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds