Wall clock time and date at job start Tue Mar 31 2020 07:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 109.46862 * 2 1 4 4 C 1.76203 * 102.99972 * 109.05528 * 2 1 3 5 5 C 1.38234 * 120.00235 * 90.00017 * 4 2 1 6 6 C 1.38234 * 120.00240 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00037 * 0.26327 * 6 5 4 8 8 C 1.50693 * 120.00207 * 179.72405 * 7 6 5 9 9 N 1.46901 * 109.47201 * 89.99355 * 8 7 6 10 10 C 1.46900 * 110.99924 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46977 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47287 * 300.00145 * 11 10 9 13 13 C 1.52994 * 109.47143 * 60.00693 * 11 10 9 14 14 C 1.50701 * 109.47119 * 180.02562 * 11 10 9 15 15 H 1.08000 * 119.99941 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00321 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99880 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 120.00291 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47188 * 59.99526 * 18 16 14 20 20 H 1.48495 * 109.47054 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46617 * 299.99690 * 18 16 14 22 22 C 1.38238 * 119.99752 * 359.47832 * 7 6 5 23 23 C 1.38234 * 120.00033 * 0.49775 * 22 7 6 24 24 H 1.09002 * 109.47402 * 310.94368 * 1 2 3 25 25 H 1.08995 * 109.47434 * 70.94719 * 1 2 3 26 26 H 1.09001 * 109.47284 * 190.94928 * 1 2 3 27 27 H 1.07999 * 119.99751 * 359.97438 * 5 4 2 28 28 H 1.08002 * 119.99744 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.47097 * 209.99342 * 8 7 6 30 30 H 1.09001 * 109.47081 * 329.99847 * 8 7 6 31 31 H 1.00894 * 111.00648 * 303.95689 * 9 8 7 32 32 H 1.08993 * 109.47637 * 300.00269 * 10 9 8 33 33 H 1.09001 * 109.46926 * 60.00690 * 10 9 8 34 34 H 1.08998 * 109.47092 * 60.00065 * 12 11 10 35 35 H 1.09000 * 109.46844 * 179.97438 * 12 11 10 36 36 H 1.08993 * 109.47458 * 300.00128 * 12 11 10 37 37 H 1.08998 * 109.47584 * 59.99662 * 13 11 10 38 38 H 1.08997 * 109.47445 * 180.02562 * 13 11 10 39 39 H 1.09003 * 109.47126 * 299.99862 * 13 11 10 40 40 H 0.97000 * 120.00480 * 180.02562 * 17 16 14 41 41 H 1.07999 * 119.99934 * 180.25938 * 22 7 6 42 42 H 1.08001 * 120.00294 * 179.76453 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2103 -0.5605 1.6228 5 6 2.3658 -1.9119 1.8686 6 6 2.6773 -2.3516 3.1416 7 6 2.8279 -1.4403 4.1700 8 6 3.1614 -1.9201 5.5591 9 7 4.6204 -1.9735 5.7216 10 6 4.9835 -2.4376 7.0673 11 6 6.5073 -2.4806 7.1980 12 6 7.0818 -3.4412 6.1550 13 6 7.0784 -1.0796 6.9705 14 6 6.8798 -2.9572 8.5783 15 1 6.1070 -3.2051 9.2908 16 6 8.2072 -3.0769 8.9315 17 7 9.1483 -2.7755 8.0636 18 14 8.6689 -3.6684 10.6422 19 1 8.1152 -5.0287 10.8618 20 1 10.1479 -3.7100 10.7691 21 1 8.1107 -2.7372 11.6552 22 6 2.6777 -0.0885 3.9231 23 6 2.3667 0.3512 2.6500 24 1 -0.3634 0.6734 0.7762 25 1 -0.3634 0.3354 -0.9713 26 1 -0.3634 -1.0090 0.1952 27 1 2.2439 -2.6242 1.0660 28 1 2.7984 -3.4075 3.3336 29 1 2.7390 -1.2327 6.2920 30 1 2.7423 -2.9150 5.7102 31 1 5.0423 -2.5542 5.0125 32 1 4.5738 -1.7536 7.8104 33 1 4.5770 -3.4359 7.2293 34 1 6.8123 -3.0969 5.1565 35 1 8.1674 -3.4715 6.2479 36 1 6.6749 -4.4393 6.3171 37 1 6.6691 -0.3952 7.7136 38 1 8.1640 -1.1103 7.0631 39 1 6.8090 -0.7352 5.9720 40 1 10.0821 -2.8600 8.3119 41 1 2.7995 0.6238 4.7257 42 1 2.2456 1.4071 2.4579 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459727574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:15 Heat of formation + Delta-G solvation = -40.426344 kcal Electronic energy + Delta-G solvation = -21057.005143 eV Core-core repulsion = 17934.392984 eV Total energy + Delta-G solvation = -3122.612159 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.30681 -38.56416 -36.86552 -35.80428 -33.40657 -31.90295 -31.57581 -29.60742 -27.51991 -27.31218 -27.08574 -24.71333 -23.70994 -22.28271 -20.36149 -19.04729 -18.01019 -17.59692 -17.04202 -16.65814 -16.23844 -15.85715 -15.73319 -15.55121 -15.19427 -14.71698 -14.51688 -14.35605 -14.29069 -13.92624 -13.65687 -13.46191 -13.30219 -13.07260 -12.97284 -12.87243 -12.61983 -12.50742 -12.28515 -12.15187 -12.08577 -11.98193 -11.33018 -11.27197 -10.98189 -10.62600 -10.35139 -10.06959 -9.88885 -9.34458 -9.17427 -7.97205 -6.14578 -0.06187 0.44671 1.00542 1.43238 1.44110 1.50925 1.82351 2.45749 2.64507 3.02497 3.24842 3.54782 3.79121 3.92219 4.09293 4.29272 4.35306 4.48034 4.51043 4.54010 4.60473 4.66696 4.73551 4.85915 4.90872 5.01567 5.09728 5.15464 5.19243 5.27048 5.29725 5.31634 5.39690 5.51570 5.63745 5.69118 5.75249 6.00405 6.12562 6.21817 6.32492 6.47227 6.60480 6.94853 7.53160 9.00883 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.040971 B = 0.002617 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.250187 B =10695.049528 C =10845.999834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.496 4.496 2 S 1.400 4.600 3 O -0.932 6.932 4 C -0.472 4.472 5 C -0.031 4.031 6 C -0.136 4.136 7 C -0.050 4.050 8 C 0.093 3.907 9 N -0.686 5.686 10 C 0.090 3.910 11 C 0.061 3.939 12 C -0.121 4.121 13 C -0.107 4.107 14 C -0.528 4.528 15 H 0.046 0.954 16 C 0.022 3.978 17 N -0.904 5.904 18 Si 0.945 3.055 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.133 4.133 23 C -0.082 4.082 24 H 0.058 0.942 25 H 0.122 0.878 26 H 0.143 0.857 27 H 0.192 0.808 28 H 0.148 0.852 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.342 0.658 32 H 0.047 0.953 33 H 0.017 0.983 34 H 0.032 0.968 35 H 0.055 0.945 36 H 0.021 0.979 37 H 0.008 0.992 38 H 0.049 0.951 39 H 0.029 0.971 40 H 0.258 0.742 41 H 0.113 0.887 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.045 -2.628 -18.360 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 1.598 4.402 3 O -0.928 6.928 4 C -0.568 4.568 5 C -0.050 4.050 6 C -0.155 4.155 7 C -0.051 4.051 8 C -0.036 4.036 9 N -0.319 5.319 10 C -0.039 4.039 11 C 0.060 3.940 12 C -0.179 4.179 13 C -0.165 4.165 14 C -0.566 4.566 15 H 0.064 0.936 16 C -0.177 4.177 17 N -0.543 5.543 18 Si 0.772 3.228 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.153 4.153 23 C -0.101 4.101 24 H 0.077 0.923 25 H 0.140 0.860 26 H 0.161 0.839 27 H 0.209 0.791 28 H 0.166 0.834 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.161 0.839 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.027 0.973 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.131 0.869 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.172 -1.679 -18.913 25.601 hybrid contribution -0.436 0.627 3.223 3.312 sum -17.608 -1.052 -15.690 23.608 Atomic orbital electron populations 1.27751 1.20678 1.09502 1.07452 1.68486 0.85867 0.96348 0.89449 1.92986 1.75943 1.40957 1.82906 1.27912 1.12463 1.00310 1.16158 1.21382 0.92559 0.93478 0.97564 1.21571 1.00436 1.00412 0.93128 1.20105 0.95613 0.93604 0.95781 1.20959 0.89124 1.00058 0.93419 1.60526 1.07889 1.58513 1.04937 1.21842 0.97266 0.95917 0.88850 1.18128 0.89740 0.92569 0.93556 1.21659 1.02663 0.97265 0.96295 1.21490 1.01308 0.96902 0.96771 1.21408 0.91881 1.44412 0.98939 0.93554 1.25554 0.96651 0.95580 0.99956 1.69963 0.99891 1.49153 1.35311 0.85818 0.76845 0.78870 0.81268 1.19837 1.21152 1.20295 1.21144 1.01073 0.95972 0.97103 1.21070 0.96646 0.99053 0.93331 0.92265 0.85995 0.83854 0.79105 0.83383 0.91088 0.93161 0.83858 0.93446 0.96510 0.94876 0.92605 0.95953 0.97298 0.93232 0.95159 0.93301 0.86885 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.54 10.70 113.37 1.21 -3.33 16 2 S 1.40 18.17 14.19 -56.49 -0.80 17.37 16 3 O -0.93 -27.13 16.90 -148.98 -2.52 -29.64 16 4 C -0.47 -8.96 5.61 22.27 0.12 -8.84 16 5 C -0.03 -0.43 9.75 22.27 0.22 -0.21 16 6 C -0.14 -2.57 9.70 22.27 0.22 -2.35 16 7 C -0.05 -1.28 5.39 -19.87 -0.11 -1.39 16 8 C 0.09 2.60 5.81 85.55 0.50 3.09 16 9 N -0.69 -23.75 5.70 -517.94 -2.95 -26.71 16 10 C 0.09 3.67 4.59 86.30 0.40 4.07 16 11 C 0.06 2.93 0.57 -52.93 -0.03 2.90 16 12 C -0.12 -5.63 7.92 71.98 0.57 -5.06 16 13 C -0.11 -5.36 8.09 71.98 0.58 -4.77 16 14 C -0.53 -28.47 8.01 25.60 0.21 -28.27 16 15 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 16 C 0.02 1.18 5.15 84.65 0.44 1.61 16 17 N -0.90 -50.78 9.35 21.45 0.20 -50.58 16 18 Si 0.95 43.34 29.54 68.60 2.03 45.36 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 C -0.13 -3.75 9.70 22.27 0.22 -3.53 16 23 C -0.08 -2.21 9.44 22.27 0.21 -2.00 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.19 0.39 8.06 -2.91 -0.02 0.37 16 28 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 29 H 0.07 2.04 8.09 -2.39 -0.02 2.02 16 30 H 0.05 1.26 8.09 -2.39 -0.02 1.24 16 31 H 0.34 11.47 6.76 -89.70 -0.61 10.87 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.03 1.35 6.57 -2.39 -0.02 1.33 16 35 H 0.06 2.93 6.07 -2.39 -0.01 2.91 16 36 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.05 2.72 6.07 -2.39 -0.01 2.71 16 39 H 0.03 1.40 7.60 -2.39 -0.02 1.38 16 40 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 41 H 0.11 3.28 8.06 -2.91 -0.02 3.26 16 42 H 0.10 3.10 7.45 -2.91 -0.02 3.08 16 Total: -1.00 -76.03 351.37 1.09 -74.93 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.39 Total: 17.34 kcal Atomic # 6 Polarization: -52.82 SS G_CDS: 4.75 Total: -48.07 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -2.75 Total: -77.29 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -2.52 Total: -29.64 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 18.17 SS G_CDS: -0.80 Total: 17.37 kcal Total: -76.03 1.09 -74.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459727574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.506 kcal (2) G-P(sol) polarization free energy of solvation -76.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds