Wall clock time and date at job start Tue Mar 31 2020 07:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46738 * 2 1 4 4 O 1.42899 * 109.47064 * 240.00531 * 2 1 3 5 5 C 1.52997 * 109.47328 * 120.00030 * 2 1 3 6 6 C 1.53006 * 109.47127 * 184.99912 * 5 2 1 7 7 N 1.46496 * 109.46995 * 180.02562 * 6 5 2 8 8 C 1.40004 * 119.99647 * 180.02562 * 7 6 5 9 9 C 1.38639 * 120.10090 * 359.97438 * 8 7 6 10 10 C 1.38288 * 120.00218 * 180.02562 * 9 8 7 11 11 C 1.38264 * 120.21099 * 359.97438 * 10 9 8 12 12 C 1.38252 * 120.19079 * 0.02562 * 11 10 9 13 13 C 1.38728 * 119.99497 * 359.72481 * 12 11 10 14 14 S 1.76203 * 120.09947 * 180.27974 * 13 12 11 15 15 C 1.81394 * 103.00143 * 0.27023 * 14 13 12 16 16 C 1.50701 * 109.47060 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99934 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99985 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99822 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00105 * 359.97438 * 18 16 15 21 21 H 1.48492 * 109.47209 * 89.99903 * 20 18 16 22 22 H 1.48500 * 109.47063 * 210.00540 * 20 18 16 23 23 H 1.48508 * 109.46947 * 330.00353 * 20 18 16 24 24 H 1.09001 * 109.46883 * 299.99367 * 1 2 3 25 25 H 1.08996 * 109.47303 * 60.00294 * 1 2 3 26 26 H 1.09002 * 109.46786 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46741 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47403 * 300.00111 * 3 2 1 29 29 H 1.09001 * 109.46917 * 60.00653 * 3 2 1 30 30 H 0.96693 * 114.00385 * 59.99846 * 4 2 1 31 31 H 1.09001 * 109.46832 * 65.00233 * 5 2 1 32 32 H 1.08993 * 109.47194 * 304.99754 * 5 2 1 33 33 H 1.09001 * 109.46801 * 300.00272 * 6 5 2 34 34 H 1.09001 * 109.46998 * 59.99868 * 6 5 2 35 35 H 0.96998 * 120.00192 * 359.97438 * 7 6 5 36 36 H 1.07997 * 120.00128 * 359.97397 * 9 8 7 37 37 H 1.08007 * 119.89693 * 179.97438 * 10 9 8 38 38 H 1.07991 * 119.90626 * 179.97438 * 11 10 9 39 39 H 1.08007 * 120.00269 * 179.97438 * 12 11 10 40 40 H 1.09006 * 109.47036 * 299.99939 * 15 14 13 41 41 H 1.08998 * 109.47591 * 60.00004 * 15 14 13 42 42 H 0.97004 * 119.99893 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0401 -0.7212 1.2492 6 6 3.5649 -0.6133 1.3136 7 7 4.0533 -1.3044 2.5094 8 6 5.4254 -1.3411 2.7852 9 6 6.3238 -0.7247 1.9279 10 6 7.6787 -0.7627 2.2021 11 6 8.1422 -1.4139 3.3303 12 6 7.2538 -2.0314 4.1909 13 6 5.8924 -1.9939 3.9266 14 16 4.7571 -2.7737 5.0255 15 6 5.8380 -3.4559 6.3126 16 6 5.0024 -4.1673 7.3453 17 1 3.9283 -4.2049 7.2383 18 6 5.6089 -4.7693 8.4274 19 7 4.8795 -5.3897 9.3289 20 14 7.4664 -4.7037 8.6128 21 1 7.8440 -3.4953 9.3888 22 1 7.9357 -5.9178 9.3277 23 1 8.0963 -4.6459 7.2692 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.7210 -0.2700 -1.9979 31 1 1.7517 -1.7715 1.2055 32 1 1.6055 -0.2617 2.1369 33 1 3.9995 -1.0727 0.4258 34 1 3.8533 0.4370 1.3572 35 1 3.4260 -1.7358 3.1104 36 1 5.9656 -0.2154 1.0455 37 1 8.3771 -0.2822 1.5328 38 1 9.2013 -1.4409 3.5394 39 1 7.6192 -2.5395 5.0711 40 1 6.5377 -4.1609 5.8634 41 1 6.3925 -2.6468 6.7879 42 1 5.3062 -5.8136 10.0899 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488199307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:33 Heat of formation + Delta-G solvation = -41.715180 kcal Electronic energy + Delta-G solvation = -20883.142247 eV Core-core repulsion = 17760.474200 eV Total energy + Delta-G solvation = -3122.668047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.30684 -38.61389 -35.60400 -33.18660 -33.01470 -30.82293 -30.28886 -29.26593 -27.82455 -27.43490 -23.94732 -22.80719 -22.17996 -20.91926 -20.43843 -17.67009 -16.95628 -16.77724 -16.27064 -16.01547 -15.40688 -14.79292 -14.63358 -14.34882 -14.17686 -13.87587 -13.48693 -13.30171 -13.21040 -13.19823 -12.69350 -12.52843 -12.46084 -12.12958 -12.10491 -11.75713 -11.60755 -11.47794 -11.03078 -10.88312 -10.83062 -10.37433 -10.27674 -10.18005 -9.83056 -9.69794 -9.16349 -9.12597 -8.73674 -7.52364 -6.39280 -6.22879 -4.26097 1.67064 1.92385 2.43993 3.19712 3.27036 3.28512 3.45425 3.66799 3.89175 4.15256 4.27669 4.43826 4.49007 4.66860 5.00533 5.08700 5.10340 5.17256 5.18093 5.32763 5.33335 5.39866 5.43924 5.56809 5.68532 5.69768 5.78295 5.80458 5.94002 5.98382 6.04331 6.22239 6.47252 6.52324 6.61903 6.66266 6.90691 7.12177 7.34944 7.36113 7.57348 7.94251 8.23526 8.77563 9.32487 10.88926 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.019372 B = 0.003473 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.062175 B = 8060.385713 C = 9309.508358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.131 3.869 3 C -0.184 4.184 4 O -0.558 6.558 5 C -0.119 4.119 6 C 0.130 3.870 7 N -0.746 5.746 8 C 0.228 3.772 9 C -0.187 4.187 10 C -0.092 4.092 11 C -0.161 4.161 12 C -0.092 4.092 13 C -0.146 4.146 14 S -0.141 6.141 15 C 0.035 3.965 16 C -0.518 4.518 17 H 0.084 0.916 18 C 0.082 3.918 19 N -0.889 5.889 20 Si 0.876 3.124 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.264 1.264 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.374 0.626 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.403 0.597 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 13.480 -20.017 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.090 3.910 3 C -0.241 4.241 4 O -0.364 6.364 5 C -0.157 4.157 6 C 0.006 3.994 7 N -0.378 5.378 8 C 0.120 3.880 9 C -0.212 4.212 10 C -0.113 4.113 11 C -0.183 4.183 12 C -0.117 4.117 13 C -0.262 4.262 14 S 0.104 5.896 15 C -0.113 4.113 16 C -0.557 4.557 17 H 0.102 0.898 18 C -0.123 4.123 19 N -0.526 5.526 20 Si 0.702 3.298 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.189 1.189 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.221 0.779 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.240 0.760 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.115 12.944 -19.521 23.781 hybrid contribution 1.820 0.290 0.155 1.849 sum -2.295 13.234 -19.366 23.568 Atomic orbital electron populations 1.22491 0.95509 1.03006 1.02611 1.21096 0.92597 0.91276 0.86047 1.22599 1.02705 0.96188 1.02613 1.86605 1.77119 1.57084 1.15601 1.21752 0.95529 1.02234 0.96195 1.21304 0.93357 0.96551 0.88199 1.44765 1.03903 1.61619 1.27480 1.17277 0.84122 0.94409 0.92233 1.20444 0.92985 1.06703 1.01047 1.20765 0.94596 0.98976 0.96987 1.20766 0.98923 1.02222 0.96368 1.21068 0.91534 0.99391 0.99746 1.21577 0.97578 1.07190 0.99887 1.84989 1.15656 1.65168 1.23829 1.21662 0.96841 0.98351 0.94460 1.20425 0.95338 1.34785 1.05183 0.89779 1.24829 0.98319 0.94191 0.94929 1.69857 1.35837 1.34948 1.11978 0.86829 0.85667 0.78266 0.78998 1.19738 1.20686 1.18887 0.91382 0.92268 0.91581 0.91205 0.92358 0.91352 0.77851 0.90284 0.89876 0.91741 0.92449 0.76015 0.86437 0.86667 0.86708 0.85891 0.94045 0.94519 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 8.82 37.16 0.33 -0.84 16 2 C 0.13 1.01 1.09 -90.62 -0.10 0.91 16 3 C -0.18 -1.22 8.33 37.16 0.31 -0.91 16 4 O -0.56 -4.74 12.51 -35.23 -0.44 -5.18 16 5 C -0.12 -1.16 4.62 -26.73 -0.12 -1.28 16 6 C 0.13 1.49 4.33 -4.04 -0.02 1.48 16 7 N -0.75 -10.99 5.68 -58.45 -0.33 -11.32 16 8 C 0.23 3.82 6.66 -83.50 -0.56 3.26 16 9 C -0.19 -2.75 9.31 -39.41 -0.37 -3.11 16 10 C -0.09 -1.29 10.04 -39.55 -0.40 -1.68 16 11 C -0.16 -2.49 10.04 -39.57 -0.40 -2.89 16 12 C -0.09 -1.69 9.36 -39.40 -0.37 -2.06 16 13 C -0.15 -2.79 6.12 -38.92 -0.24 -3.02 16 14 S -0.14 -3.03 20.37 -107.50 -2.19 -5.22 16 15 C 0.03 0.84 3.16 36.01 0.11 0.96 16 16 C -0.52 -14.70 9.68 -34.44 -0.33 -15.04 16 17 H 0.08 2.59 7.96 -52.49 -0.42 2.17 16 18 C 0.08 2.34 5.47 -17.82 -0.10 2.25 16 19 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 20 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.51 6.34 -51.93 -0.33 0.18 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.37 1.71 9.04 45.56 0.41 2.12 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.79 7.63 -51.93 -0.40 0.40 16 34 H 0.06 0.61 6.16 -51.93 -0.32 0.29 16 35 H 0.40 6.20 7.02 -40.82 -0.29 5.92 16 36 H 0.12 1.46 6.74 -52.49 -0.35 1.11 16 37 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 39 H 0.12 2.33 5.88 -52.48 -0.31 2.02 16 40 H 0.04 1.00 6.79 -51.92 -0.35 0.65 16 41 H 0.04 0.87 7.19 -51.92 -0.37 0.50 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -31.39 349.95 -9.53 -40.92 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.70 Total: 7.15 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -2.25 Total: -21.98 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.44 Total: -37.25 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.44 Total: -5.18 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.19 Total: -5.22 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.39 -9.53 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488199307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.795 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds