Wall clock time and date at job start Tue Mar 31 2020 07:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46738 * 2 1 4 4 O 1.42899 * 109.47064 * 240.00531 * 2 1 3 5 5 C 1.52997 * 109.47328 * 120.00030 * 2 1 3 6 6 C 1.53006 * 109.47127 * 184.99912 * 5 2 1 7 7 N 1.46496 * 109.46995 * 180.02562 * 6 5 2 8 8 C 1.40004 * 119.99647 * 180.02562 * 7 6 5 9 9 C 1.38639 * 120.10090 * 359.97438 * 8 7 6 10 10 C 1.38288 * 120.00218 * 180.02562 * 9 8 7 11 11 C 1.38264 * 120.21099 * 359.97438 * 10 9 8 12 12 C 1.38252 * 120.19079 * 0.02562 * 11 10 9 13 13 C 1.38728 * 119.99497 * 359.72481 * 12 11 10 14 14 S 1.76203 * 120.09947 * 180.27974 * 13 12 11 15 15 C 1.81394 * 103.00143 * 0.27023 * 14 13 12 16 16 C 1.50701 * 109.47060 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99934 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99985 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99822 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00105 * 359.97438 * 18 16 15 21 21 H 1.48492 * 109.47209 * 89.99903 * 20 18 16 22 22 H 1.48500 * 109.47063 * 210.00540 * 20 18 16 23 23 H 1.48508 * 109.46947 * 330.00353 * 20 18 16 24 24 H 1.09001 * 109.46883 * 299.99367 * 1 2 3 25 25 H 1.08996 * 109.47303 * 60.00294 * 1 2 3 26 26 H 1.09002 * 109.46786 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46741 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47403 * 300.00111 * 3 2 1 29 29 H 1.09001 * 109.46917 * 60.00653 * 3 2 1 30 30 H 0.96693 * 114.00385 * 59.99846 * 4 2 1 31 31 H 1.09001 * 109.46832 * 65.00233 * 5 2 1 32 32 H 1.08993 * 109.47194 * 304.99754 * 5 2 1 33 33 H 1.09001 * 109.46801 * 300.00272 * 6 5 2 34 34 H 1.09001 * 109.46998 * 59.99868 * 6 5 2 35 35 H 0.96998 * 120.00192 * 359.97438 * 7 6 5 36 36 H 1.07997 * 120.00128 * 359.97397 * 9 8 7 37 37 H 1.08007 * 119.89693 * 179.97438 * 10 9 8 38 38 H 1.07991 * 119.90626 * 179.97438 * 11 10 9 39 39 H 1.08007 * 120.00269 * 179.97438 * 12 11 10 40 40 H 1.09006 * 109.47036 * 299.99939 * 15 14 13 41 41 H 1.08998 * 109.47591 * 60.00004 * 15 14 13 42 42 H 0.97004 * 119.99893 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0401 -0.7212 1.2492 6 6 3.5649 -0.6133 1.3136 7 7 4.0533 -1.3044 2.5094 8 6 5.4254 -1.3411 2.7852 9 6 6.3238 -0.7247 1.9279 10 6 7.6787 -0.7627 2.2021 11 6 8.1422 -1.4139 3.3303 12 6 7.2538 -2.0314 4.1909 13 6 5.8924 -1.9939 3.9266 14 16 4.7571 -2.7737 5.0255 15 6 5.8380 -3.4559 6.3126 16 6 5.0024 -4.1673 7.3453 17 1 3.9283 -4.2049 7.2383 18 6 5.6089 -4.7693 8.4274 19 7 4.8795 -5.3897 9.3289 20 14 7.4664 -4.7037 8.6128 21 1 7.8440 -3.4953 9.3888 22 1 7.9357 -5.9178 9.3277 23 1 8.0963 -4.6459 7.2692 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.7210 -0.2700 -1.9979 31 1 1.7517 -1.7715 1.2055 32 1 1.6055 -0.2617 2.1369 33 1 3.9995 -1.0727 0.4258 34 1 3.8533 0.4370 1.3572 35 1 3.4260 -1.7358 3.1104 36 1 5.9656 -0.2154 1.0455 37 1 8.3771 -0.2822 1.5328 38 1 9.2013 -1.4409 3.5394 39 1 7.6192 -2.5395 5.0711 40 1 6.5377 -4.1609 5.8634 41 1 6.3925 -2.6468 6.7879 42 1 5.3062 -5.8136 10.0899 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488199307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:32 Heat of formation + Delta-G solvation = -62.325247 kcal Electronic energy + Delta-G solvation = -20884.035967 eV Core-core repulsion = 17760.474200 eV Total energy + Delta-G solvation = -3123.561767 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35578 -39.42821 -36.64821 -35.27750 -33.82534 -32.19500 -31.46815 -30.98551 -28.58602 -28.20686 -25.17138 -24.53811 -23.42732 -22.13388 -21.13455 -19.35699 -18.52574 -17.62766 -17.49394 -17.14862 -16.42986 -16.20667 -15.75953 -15.56266 -15.21668 -14.97402 -14.89924 -14.82806 -14.58021 -14.32816 -14.05153 -13.93688 -13.20715 -13.02901 -12.74934 -12.73179 -12.65234 -12.56444 -12.40672 -12.28066 -12.17025 -11.93848 -11.64582 -11.56113 -10.97876 -10.95292 -10.89786 -10.84033 -10.46243 -8.83955 -8.42411 -7.88808 -6.52868 0.40221 0.69256 0.82361 1.31111 1.32677 1.43211 1.83556 2.25392 2.50845 2.90187 2.91805 3.33287 3.73188 3.88945 3.95588 4.03877 4.22900 4.23944 4.37498 4.48889 4.52945 4.54948 4.58143 4.64752 4.70152 4.74679 4.81478 4.90508 4.97551 5.03813 5.05203 5.20793 5.23579 5.24051 5.29409 5.39232 5.47181 5.69371 5.95908 6.00735 6.42763 6.50194 6.69765 6.94164 7.10195 8.73141 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.019372 B = 0.003473 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.062175 B = 8060.385713 C = 9309.508358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.134 3.866 3 C -0.180 4.180 4 O -0.577 6.577 5 C -0.120 4.120 6 C 0.133 3.867 7 N -0.749 5.749 8 C 0.220 3.780 9 C -0.186 4.186 10 C -0.075 4.075 11 C -0.165 4.165 12 C -0.109 4.109 13 C -0.175 4.175 14 S -0.163 6.163 15 C 0.042 3.958 16 C -0.533 4.533 17 H 0.041 0.959 18 C 0.025 3.975 19 N -0.935 5.935 20 Si 0.948 3.052 21 H -0.260 1.260 22 H -0.273 1.273 23 H -0.248 1.248 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.391 0.609 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.396 0.604 36 H 0.144 0.856 37 H 0.157 0.843 38 H 0.141 0.859 39 H 0.109 0.891 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.998 15.645 -22.498 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.093 3.907 3 C -0.238 4.238 4 O -0.386 6.386 5 C -0.158 4.158 6 C 0.010 3.990 7 N -0.379 5.379 8 C 0.111 3.889 9 C -0.211 4.211 10 C -0.096 4.096 11 C -0.186 4.186 12 C -0.134 4.134 13 C -0.292 4.292 14 S 0.080 5.920 15 C -0.106 4.106 16 C -0.572 4.572 17 H 0.059 0.941 18 C -0.176 4.176 19 N -0.573 5.573 20 Si 0.769 3.231 21 H -0.184 1.184 22 H -0.198 1.198 23 H -0.171 1.171 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.241 0.759 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.231 0.769 36 H 0.162 0.838 37 H 0.174 0.826 38 H 0.159 0.841 39 H 0.127 0.873 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.052 15.136 -22.050 26.824 hybrid contribution 1.100 -0.318 0.774 1.382 sum -0.952 14.818 -21.276 25.945 Atomic orbital electron populations 1.22464 0.94611 1.02609 1.03691 1.21049 0.93189 0.91526 0.84955 1.22562 1.02270 0.95300 1.03632 1.86558 1.77510 1.57898 1.16646 1.21774 0.94513 1.01677 0.97819 1.21425 0.94301 0.96731 0.86517 1.44992 1.03303 1.61496 1.28153 1.17545 0.85301 0.94174 0.91830 1.20821 0.93120 1.05928 1.01211 1.21262 0.94941 0.96998 0.96420 1.21080 0.99798 1.01582 0.96180 1.21144 0.91723 1.00286 1.00235 1.21520 0.97365 1.09622 1.00696 1.84869 1.16521 1.66385 1.24258 1.21370 0.96618 0.98104 0.94475 1.20605 0.93986 1.35705 1.06897 0.94084 1.25821 1.04125 0.93384 0.94241 1.69998 1.38420 1.36067 1.12858 0.85700 0.78614 0.78875 0.79871 1.18432 1.19848 1.17145 0.91043 0.90468 0.92728 0.91786 0.90576 0.91160 0.75897 0.91944 0.89521 0.92253 0.91031 0.76883 0.83797 0.82556 0.84116 0.87299 0.93997 0.94056 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.82 71.98 0.63 -1.40 16 2 C 0.13 1.86 1.09 -10.79 -0.01 1.85 16 3 C -0.18 -1.94 8.33 71.98 0.60 -1.34 16 4 O -0.58 -8.83 12.51 -148.98 -1.86 -10.70 16 5 C -0.12 -2.26 4.62 30.60 0.14 -2.12 16 6 C 0.13 2.89 4.33 86.38 0.37 3.26 16 7 N -0.75 -21.78 5.68 -338.82 -1.93 -23.71 16 8 C 0.22 7.14 6.66 38.24 0.25 7.39 16 9 C -0.19 -4.87 9.31 22.38 0.21 -4.66 16 10 C -0.08 -1.79 10.04 22.29 0.22 -1.57 16 11 C -0.16 -4.59 10.04 22.28 0.22 -4.37 16 12 C -0.11 -3.90 9.36 22.39 0.21 -3.69 16 13 C -0.18 -6.69 6.12 22.70 0.14 -6.55 16 14 S -0.16 -7.28 20.37 -56.49 -1.15 -8.43 16 15 C 0.04 2.12 3.16 71.24 0.23 2.34 16 16 C -0.53 -31.62 9.68 25.60 0.25 -31.37 16 17 H 0.04 2.71 7.96 -2.91 -0.02 2.68 16 18 C 0.03 1.46 5.47 84.66 0.46 1.93 16 19 N -0.93 -58.03 13.96 21.45 0.30 -57.73 16 20 Si 0.95 43.43 27.47 68.60 1.88 45.31 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.77 6.34 -2.39 -0.02 0.75 16 28 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.39 2.72 9.04 -74.06 -0.67 2.05 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.36 7.63 -2.39 -0.02 1.34 16 34 H 0.07 1.36 6.16 -2.39 -0.01 1.35 16 35 H 0.40 12.52 7.02 -92.71 -0.65 11.87 16 36 H 0.14 2.98 6.74 -2.91 -0.02 2.96 16 37 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.14 3.14 8.06 -2.92 -0.02 3.11 16 39 H 0.11 4.10 5.88 -2.91 -0.02 4.08 16 40 H 0.04 2.06 6.79 -2.39 -0.02 2.04 16 41 H 0.04 2.00 7.19 -2.39 -0.02 1.98 16 42 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -70.60 349.95 0.82 -69.77 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.35 Total: 25.78 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 3.93 Total: -40.30 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -1.63 Total: -81.44 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -1.86 Total: -10.70 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.31 kcal Atomic # 16 Polarization: -7.28 SS G_CDS: -1.15 Total: -8.43 kcal Total: -70.60 0.82 -69.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488199307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.446 kcal (2) G-P(sol) polarization free energy of solvation -70.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds