Wall clock time and date at job start Tue Mar 31 2020 08:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47252 * 212.66896 * 3 2 1 5 5 C 1.46497 * 120.00133 * 270.27574 * 4 3 2 6 6 C 1.47206 * 109.47284 * 269.72373 * 5 4 3 7 7 C 5.38609 * 150.71715 * 161.97719 * 2 1 3 8 8 C 1.34776 * 120.00125 * 89.99688 * 4 3 2 9 9 O 1.21288 * 120.00052 * 180.02562 * 8 4 3 10 10 C 1.50703 * 120.00211 * 0.02562 * 8 4 3 11 11 C 1.52999 * 109.47225 * 179.97438 * 10 8 4 12 12 H 1.08997 * 109.47294 * 54.99593 * 11 10 8 13 13 C 1.50706 * 109.46895 * 294.99831 * 11 10 8 14 14 H 1.07997 * 119.99880 * 325.83957 * 13 11 10 15 15 C 1.37877 * 119.99734 * 145.85003 * 13 11 10 16 16 N 1.31510 * 120.00619 * 6.11230 * 15 13 11 17 17 Si 1.86805 * 119.99684 * 186.12007 * 15 13 11 18 18 H 1.48500 * 109.46947 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47037 * 119.99721 * 17 15 13 20 20 H 1.48496 * 109.46943 * 239.99434 * 17 15 13 21 21 C 1.50698 * 109.47038 * 174.99923 * 11 10 8 22 22 C 1.38238 * 119.99895 * 63.46868 * 21 11 10 23 23 C 1.38239 * 119.99404 * 179.80978 * 22 21 11 24 24 C 1.38229 * 120.00218 * 0.39851 * 23 22 21 25 25 C 1.38238 * 120.00290 * 359.85171 * 24 23 22 26 26 C 1.38229 * 119.99531 * 359.96065 * 25 24 23 27 27 H 4.40633 * 5.51398 * 179.97438 * 4 1 2 28 28 H 1.09004 * 109.47383 * 92.66391 * 3 2 1 29 29 H 1.09010 * 109.47291 * 332.66593 * 3 2 1 30 30 H 1.09007 * 109.46935 * 29.72174 * 5 4 3 31 31 H 1.08999 * 109.48018 * 149.72359 * 5 4 3 32 32 H 6.33552 * 153.90041 * 155.42946 * 2 1 3 33 33 H 1.08999 * 109.46943 * 299.99684 * 10 8 4 34 34 H 1.08997 * 109.47076 * 59.99733 * 10 8 4 35 35 H 0.96991 * 120.00445 * 180.02562 * 16 15 13 36 36 H 1.07997 * 119.99998 * 359.97438 * 22 21 11 37 37 H 1.08005 * 119.99559 * 180.22538 * 23 22 21 38 38 H 1.08004 * 119.99711 * 179.83605 * 24 23 22 39 39 H 1.08001 * 120.00085 * 179.97438 * 25 24 23 40 40 H 1.08004 * 119.99674 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.1635 0.7455 5 6 3.3717 2.4315 0.0514 6 6 4.7620 2.4738 -0.4307 7 6 5.8719 2.5052 -0.8151 8 6 3.3585 1.0685 2.0710 9 8 3.7619 2.0314 2.6883 10 6 3.1084 -0.2343 2.7862 11 6 3.4402 -0.0728 4.2710 12 1 2.8743 0.7637 4.6809 13 6 4.9151 0.1925 4.4301 14 1 5.6223 -0.2671 3.7557 15 6 5.3616 1.0220 5.4370 16 7 4.5157 1.4854 6.3310 17 14 7.1682 1.4878 5.5310 18 1 7.9052 0.8397 4.4165 19 1 7.3053 2.9626 5.4243 20 1 7.7303 1.0310 6.8274 21 6 3.0747 -1.3357 5.0076 22 6 3.7207 -2.5211 4.7100 23 6 3.3881 -3.6786 5.3884 24 6 2.4038 -3.6526 6.3586 25 6 1.7542 -2.4683 6.6526 26 6 2.0895 -1.3100 5.9769 27 1 -1.0501 -0.0002 -0.0003 28 1 3.0094 0.0486 -1.0266 29 1 3.0098 -0.9122 0.4719 30 1 2.6907 2.5154 -0.7956 31 1 3.2003 3.2599 0.7388 32 1 6.8635 2.5348 -1.1590 33 1 2.0607 -0.5139 2.6760 34 1 3.7392 -1.0120 2.3558 35 1 4.8298 2.0692 7.0390 36 1 4.4871 -2.5421 3.9493 37 1 3.8954 -4.6040 5.1585 38 1 2.1422 -4.5576 6.8868 39 1 0.9849 -2.4481 7.4104 40 1 1.5816 -0.3848 6.2063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490712571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:28 Heat of formation + Delta-G solvation = 87.055293 kcal Electronic energy + Delta-G solvation = -22967.399139 eV Core-core repulsion = 19714.871047 eV Total energy + Delta-G solvation = -3252.528092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.00732 -39.77544 -37.27283 -35.84649 -34.58637 -33.41904 -33.07319 -31.49575 -30.60922 -28.97842 -27.89299 -26.59728 -24.32988 -23.12313 -21.61811 -20.56322 -19.63795 -18.66466 -18.38832 -18.02783 -17.27765 -17.13601 -16.50738 -16.28883 -15.71895 -15.47484 -14.91304 -14.68854 -14.64728 -14.30355 -14.27406 -14.03205 -13.88315 -13.57489 -13.47211 -13.18885 -12.88517 -12.56564 -12.46947 -11.82959 -11.81196 -11.67366 -11.39448 -11.28462 -11.15398 -11.09057 -10.90957 -10.63337 -10.34611 -9.99088 -9.53368 -9.18568 -8.05393 -6.07592 0.78723 0.84571 1.30884 1.33021 1.37203 1.44393 1.78468 1.87538 1.94869 2.04459 2.44808 2.65415 3.18907 3.35367 3.46454 3.62560 3.87554 4.24188 4.28081 4.35927 4.38818 4.40596 4.50107 4.55352 4.56597 4.69410 4.72761 4.93185 4.98524 5.05746 5.13274 5.20393 5.37466 5.51042 5.55579 5.63659 5.77905 5.84484 5.95273 6.17096 6.37340 6.43921 6.47137 6.67058 6.73124 6.99965 7.42344 7.55408 9.04543 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.010610 B = 0.006567 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.437887 B = 4262.682508 C = 6153.810941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.239 4.239 3 C 0.217 3.783 4 N -0.616 5.616 5 C 0.223 3.777 6 C -0.235 4.235 7 C -0.187 4.187 8 C 0.516 3.484 9 O -0.545 6.545 10 C -0.109 4.109 11 C 0.083 3.917 12 H 0.022 0.978 13 C -0.483 4.483 14 H 0.046 0.954 15 C 0.024 3.976 16 N -0.916 5.916 17 Si 0.933 3.067 18 H -0.266 1.266 19 H -0.293 1.293 20 H -0.281 1.281 21 C -0.045 4.045 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.147 4.147 25 C -0.128 4.128 26 C -0.143 4.143 27 H 0.245 0.755 28 H 0.126 0.874 29 H 0.112 0.888 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.246 0.754 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.253 0.747 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.199 -7.704 -13.677 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.240 4.240 3 C 0.096 3.904 4 N -0.350 5.350 5 C 0.101 3.899 6 C -0.236 4.236 7 C -0.205 4.205 8 C 0.305 3.695 9 O -0.420 6.420 10 C -0.149 4.149 11 C 0.064 3.936 12 H 0.041 0.959 13 C -0.521 4.521 14 H 0.065 0.935 15 C -0.175 4.175 16 N -0.556 5.556 17 Si 0.761 3.239 18 H -0.190 1.190 19 H -0.220 1.220 20 H -0.207 1.207 21 C -0.046 4.046 22 C -0.146 4.146 23 C -0.143 4.143 24 C -0.165 4.165 25 C -0.146 4.146 26 C -0.162 4.162 27 H 0.261 0.739 28 H 0.144 0.856 29 H 0.129 0.871 30 H 0.148 0.852 31 H 0.100 0.900 32 H 0.262 0.738 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.062 0.938 36 H 0.134 0.866 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.969 -7.068 -13.164 16.089 hybrid contribution 1.043 1.039 0.482 1.549 sum -4.927 -6.029 -12.682 14.881 Atomic orbital electron populations 1.25741 0.96816 0.97858 0.99076 1.23885 0.95517 1.02589 1.02017 1.18614 0.83690 0.88975 0.99112 1.48143 1.66799 1.12528 1.07482 1.18295 0.87513 0.87003 0.97069 1.24062 0.97032 1.02405 1.00119 1.25764 0.96555 0.97980 1.00184 1.21184 0.75716 0.91071 0.81494 1.90745 1.44280 1.40592 1.66383 1.21674 1.01865 0.94073 0.97328 1.17619 0.95864 0.90931 0.89156 0.95950 1.20983 0.91766 1.26604 1.12728 0.93532 1.25470 1.00133 0.96099 0.95789 1.70052 1.35393 1.34790 1.15371 0.85884 0.82653 0.77524 0.77851 1.18975 1.22025 1.20665 1.20539 0.92457 0.95730 0.95876 1.21035 0.99718 0.92460 1.01342 1.21370 0.98049 0.98223 0.96657 1.21265 0.97781 0.98167 0.99300 1.21277 1.00734 0.92799 0.99768 1.21085 0.99031 0.97806 0.98255 0.73906 0.85631 0.87057 0.85227 0.89999 0.73779 0.89756 0.88507 0.93791 0.86633 0.84058 0.83826 0.85071 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.52 19.25 74.32 1.43 -2.09 16 2 C -0.24 -5.46 13.52 31.12 0.42 -5.04 16 3 C 0.22 4.90 5.68 84.57 0.48 5.38 16 4 N -0.62 -19.27 2.39 -842.94 -2.02 -21.29 16 5 C 0.22 6.39 5.88 84.58 0.50 6.89 16 6 C -0.23 -7.02 13.68 31.12 0.43 -6.60 16 7 C -0.19 -4.93 19.26 74.31 1.43 -3.50 16 8 C 0.52 21.68 7.41 87.66 0.65 22.33 16 9 O -0.55 -29.13 14.57 -3.06 -0.04 -29.18 16 10 C -0.11 -4.38 3.50 29.85 0.10 -4.28 16 11 C 0.08 4.19 1.67 -12.29 -0.02 4.17 16 12 H 0.02 1.33 6.98 -2.39 -0.02 1.31 16 13 C -0.48 -26.99 6.37 25.60 0.16 -26.83 16 14 H 0.05 2.57 7.82 -2.91 -0.02 2.55 16 15 C 0.02 1.40 5.45 84.66 0.46 1.87 16 16 N -0.92 -57.17 12.87 21.45 0.28 -56.89 16 17 Si 0.93 47.60 29.54 68.60 2.03 49.62 16 18 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.29 -15.26 7.11 99.48 0.71 -14.55 16 20 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 21 C -0.05 -2.06 4.77 -19.87 -0.09 -2.15 16 22 C -0.13 -5.00 8.86 22.27 0.20 -4.80 16 23 C -0.13 -4.07 10.05 22.27 0.22 -3.84 16 24 C -0.15 -4.59 10.05 22.27 0.22 -4.36 16 25 C -0.13 -4.52 10.05 22.27 0.22 -4.30 16 26 C -0.14 -6.25 9.67 22.27 0.22 -6.03 16 27 H 0.24 2.98 7.80 -4.41 -0.03 2.95 16 28 H 0.13 2.08 8.07 -2.39 -0.02 2.06 16 29 H 0.11 2.36 6.44 -2.38 -0.02 2.34 16 30 H 0.13 2.65 8.07 -2.38 -0.02 2.63 16 31 H 0.08 2.74 7.42 -2.39 -0.02 2.72 16 32 H 0.25 4.40 7.80 -4.42 -0.03 4.37 16 33 H 0.08 3.04 7.95 -2.39 -0.02 3.02 16 34 H 0.10 3.45 7.03 -2.39 -0.02 3.43 16 35 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.12 4.35 7.76 -2.91 -0.02 4.33 16 37 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 39 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 40 H 0.09 4.26 7.95 -2.91 -0.02 4.23 16 Total: -1.00 -77.99 359.41 8.29 -69.70 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 1.02 Total: 21.22 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 7.03 Total: -33.18 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -1.74 Total: -78.18 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.04 Total: -29.18 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.62 kcal Total: -77.99 8.29 -69.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490712571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.751 kcal (2) G-P(sol) polarization free energy of solvation -77.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds