Wall clock time and date at job start Tue Mar 31 2020 08:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47447 * 206.78555 * 3 2 1 5 5 C 1.46499 * 120.00349 * 270.00829 * 4 3 2 6 6 C 1.47203 * 109.46753 * 269.99728 * 5 4 3 7 7 C 5.38475 * 150.86355 * 155.95613 * 2 1 3 8 8 C 1.34777 * 119.99559 * 89.99605 * 4 3 2 9 9 O 1.21283 * 120.00046 * 0.02562 * 8 4 3 10 10 C 1.50698 * 119.99686 * 180.02562 * 8 4 3 11 11 C 1.53005 * 109.46990 * 180.02562 * 10 8 4 12 12 H 1.08994 * 109.46934 * 305.97546 * 11 10 8 13 13 C 1.50700 * 109.47299 * 65.97885 * 11 10 8 14 14 H 1.08008 * 119.99531 * 26.90748 * 13 11 10 15 15 C 1.37869 * 120.00160 * 206.90965 * 13 11 10 16 16 N 1.31508 * 120.00032 * 353.27812 * 15 13 11 17 17 Si 1.86806 * 120.00073 * 173.54969 * 15 13 11 18 18 H 1.48497 * 109.46895 * 179.72442 * 17 15 13 19 19 H 1.48495 * 109.46957 * 299.72695 * 17 15 13 20 20 H 1.48501 * 109.46761 * 59.72686 * 17 15 13 21 21 C 1.50705 * 109.47056 * 185.97689 * 11 10 8 22 22 C 1.38237 * 120.00118 * 294.44966 * 21 11 10 23 23 C 1.38237 * 119.99818 * 179.78603 * 22 21 11 24 24 C 1.38236 * 120.00003 * 0.44191 * 23 22 21 25 25 C 1.38236 * 119.99991 * 359.81061 * 24 23 22 26 26 C 1.38228 * 119.99825 * 114.71859 * 21 11 10 27 27 H 4.40646 * 5.51432 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.46939 * 86.78782 * 3 2 1 29 29 H 1.08999 * 109.47236 * 326.79210 * 3 2 1 30 30 H 1.09007 * 109.46909 * 29.99033 * 5 4 3 31 31 H 1.08999 * 109.47455 * 149.99624 * 5 4 3 32 32 H 6.33345 * 154.05414 * 149.33735 * 2 1 3 33 33 H 1.09000 * 109.47229 * 60.00363 * 10 8 4 34 34 H 1.09003 * 109.47630 * 300.00294 * 10 8 4 35 35 H 0.97008 * 120.00303 * 354.69126 * 16 15 13 36 36 H 1.08005 * 119.99967 * 359.97438 * 22 21 11 37 37 H 1.07999 * 119.99448 * 180.27078 * 23 22 21 38 38 H 1.07997 * 119.99991 * 179.83259 * 24 23 22 39 39 H 1.07993 * 119.99965 * 180.02562 * 25 24 23 40 40 H 1.07999 * 120.00249 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2339 0.6224 5 6 3.3773 2.4223 -0.1988 6 6 4.7676 2.4080 -0.6825 7 6 5.8774 2.3943 -1.0682 8 6 3.3584 1.2751 1.9507 9 8 3.1570 0.2911 2.6306 10 6 3.8597 2.5438 2.5911 11 6 4.0304 2.3227 4.0955 12 1 3.0975 1.9470 4.5156 13 6 5.1291 1.3193 4.3343 14 1 5.9227 1.2050 3.6106 15 6 5.1211 0.5471 5.4764 16 7 4.2326 0.7758 6.4186 17 14 6.3772 -0.8192 5.6890 18 1 6.1613 -1.4911 6.9955 19 1 6.2230 -1.8083 4.5921 20 1 7.7457 -0.2440 5.6482 21 6 4.3898 3.6281 4.7574 22 6 5.5954 4.2401 4.4697 23 6 5.9231 5.4397 5.0735 24 6 5.0491 6.0226 5.9720 25 6 3.8457 5.4080 6.2636 26 6 3.5162 4.2106 5.6565 27 1 -1.0502 -0.0004 0.0000 28 1 3.0093 -0.0568 -1.0261 29 1 3.0097 -0.8590 0.5628 30 1 2.6965 2.4214 -1.0501 31 1 3.2100 3.3180 0.3994 32 1 6.8691 2.3836 -1.4132 33 1 3.1410 3.3454 2.4206 34 1 4.8196 2.8172 2.1532 35 1 3.6331 1.5350 6.3461 36 1 6.2801 3.7825 3.7708 37 1 6.8631 5.9199 4.8453 38 1 5.3062 6.9584 6.4458 39 1 3.1628 5.8636 6.9652 40 1 2.5760 3.7305 5.8842 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490712572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:31 Heat of formation + Delta-G solvation = 101.309486 kcal Electronic energy + Delta-G solvation = -23007.599109 eV Core-core repulsion = 19755.689125 eV Total energy + Delta-G solvation = -3251.909984 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.61884 -38.40657 -35.97705 -34.36326 -33.54768 -32.10122 -31.30315 -30.11290 -29.27158 -27.82946 -26.32243 -24.57487 -22.81744 -21.66747 -20.25056 -19.32251 -18.63724 -17.54623 -16.92357 -16.59680 -15.93093 -15.76406 -15.37206 -14.46061 -14.13168 -13.74947 -13.67147 -13.54570 -13.29554 -13.22092 -12.93867 -12.69794 -12.37050 -12.24079 -11.87823 -11.48481 -10.98002 -10.75702 -10.71739 -10.43846 -10.39158 -10.18759 -10.13767 -10.06002 -10.03116 -9.66952 -9.07842 -8.72721 -8.62025 -8.28118 -8.13959 -7.64110 -6.22063 -3.91121 2.18856 2.22835 2.37020 2.82400 2.91093 2.92838 3.33569 3.50148 3.55774 3.71519 3.76794 4.34557 4.53294 4.60774 4.67846 5.05215 5.17819 5.37724 5.44014 5.58996 5.59709 5.63442 5.75696 5.79205 5.91558 5.95881 6.00053 6.09440 6.15374 6.31647 6.41451 6.60066 6.70725 6.79082 6.92436 7.20385 7.22560 7.36952 7.59846 7.67510 7.71056 7.72667 7.85695 8.22641 8.51911 8.84247 8.97673 9.77706 11.17327 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.010917 B = 0.005828 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.144556 B = 4803.649888 C = 5715.347550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.194 4.194 3 C 0.222 3.778 4 N -0.624 5.624 5 C 0.222 3.778 6 C -0.207 4.207 7 C -0.186 4.186 8 C 0.519 3.481 9 O -0.485 6.485 10 C -0.114 4.114 11 C 0.073 3.927 12 H 0.049 0.951 13 C -0.568 4.568 14 H 0.045 0.955 15 C 0.032 3.968 16 N -0.905 5.905 17 Si 1.059 2.941 18 H -0.284 1.284 19 H -0.288 1.288 20 H -0.290 1.290 21 C -0.033 4.033 22 C -0.106 4.106 23 C -0.130 4.130 24 C -0.152 4.152 25 C -0.124 4.124 26 C -0.130 4.130 27 H 0.215 0.785 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.216 0.784 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.271 0.729 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 6.535 -13.460 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.195 4.195 3 C 0.100 3.900 4 N -0.360 5.360 5 C 0.099 3.901 6 C -0.209 4.209 7 C -0.205 4.205 8 C 0.308 3.692 9 O -0.355 6.355 10 C -0.154 4.154 11 C 0.054 3.946 12 H 0.067 0.933 13 C -0.605 4.605 14 H 0.063 0.937 15 C -0.173 4.173 16 N -0.540 5.540 17 Si 0.888 3.112 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.217 1.217 21 C -0.034 4.034 22 C -0.124 4.124 23 C -0.148 4.148 24 C -0.170 4.170 25 C -0.143 4.143 26 C -0.148 4.148 27 H 0.232 0.768 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.646 4.719 -11.996 12.996 hybrid contribution -0.305 1.299 -1.086 1.721 sum -1.950 6.018 -13.082 14.532 Atomic orbital electron populations 1.24884 0.95874 0.99805 1.01359 1.23734 0.95064 1.00773 0.99930 1.18201 0.83311 0.89429 0.99082 1.48215 1.68094 1.11827 1.07870 1.18350 0.86866 0.89554 0.95309 1.23718 0.96045 1.01330 0.99764 1.24976 0.96079 0.99202 1.00213 1.21015 0.76563 0.91452 0.80146 1.90761 1.47674 1.36235 1.60832 1.21717 1.00611 0.93307 0.99766 1.17877 0.99368 0.89680 0.87725 0.93253 1.21524 1.09726 1.21296 1.07975 0.93683 1.25570 0.99282 0.99912 0.92570 1.70732 1.19353 1.29836 1.34125 0.83697 0.75042 0.76267 0.76152 1.20911 1.21495 1.21711 1.20834 0.92833 0.94737 0.94968 1.20921 0.96705 0.94341 1.00393 1.21013 0.98877 0.96632 0.98275 1.20826 0.95465 1.00237 1.00486 1.20960 0.96950 0.96283 1.00060 1.21072 0.99806 0.95429 0.98510 0.76777 0.88754 0.87425 0.88499 0.87803 0.76690 0.91568 0.90003 0.91784 0.86734 0.87457 0.87579 0.87449 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.58 19.25 29.55 0.57 -2.01 16 2 C -0.19 -2.80 13.68 -37.13 -0.51 -3.31 16 3 C 0.22 3.16 5.88 -6.83 -0.04 3.12 16 4 N -0.62 -9.80 2.39 -180.37 -0.43 -10.23 16 5 C 0.22 2.68 5.69 -6.83 -0.04 2.64 16 6 C -0.21 -2.65 13.53 -37.11 -0.50 -3.15 16 7 C -0.19 -2.18 19.26 29.56 0.57 -1.61 16 8 C 0.52 10.60 7.42 -10.99 -0.08 10.52 16 9 O -0.49 -12.27 14.60 5.55 0.08 -12.19 16 10 C -0.11 -2.25 3.51 -27.88 -0.10 -2.35 16 11 C 0.07 1.75 1.23 -92.92 -0.11 1.64 16 12 H 0.05 1.35 6.59 -51.93 -0.34 1.01 16 13 C -0.57 -15.56 6.35 -34.44 -0.22 -15.78 16 14 H 0.04 1.25 7.82 -52.48 -0.41 0.83 16 15 C 0.03 0.94 5.45 -17.83 -0.10 0.84 16 16 N -0.91 -27.81 13.56 55.43 0.75 -27.06 16 17 Si 1.06 26.45 29.91 -169.99 -5.08 21.37 16 18 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.03 -0.73 4.53 -104.62 -0.47 -1.21 16 22 C -0.11 -2.17 8.90 -39.58 -0.35 -2.52 16 23 C -0.13 -2.35 10.05 -39.58 -0.40 -2.74 16 24 C -0.15 -2.64 10.05 -39.58 -0.40 -3.04 16 25 C -0.12 -2.28 10.05 -39.58 -0.40 -2.68 16 26 C -0.13 -2.72 9.18 -39.58 -0.36 -3.09 16 27 H 0.22 1.94 7.80 -54.08 -0.42 1.52 16 28 H 0.09 1.04 8.07 -51.93 -0.42 0.62 16 29 H 0.11 1.73 7.42 -51.93 -0.39 1.34 16 30 H 0.10 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.10 1.17 6.44 -51.93 -0.33 0.83 16 32 H 0.22 1.80 7.80 -54.09 -0.42 1.37 16 33 H 0.07 1.13 7.40 -51.93 -0.38 0.75 16 34 H 0.08 1.56 7.78 -51.93 -0.40 1.15 16 35 H 0.27 8.19 6.24 -40.82 -0.25 7.94 16 36 H 0.11 2.33 7.85 -52.48 -0.41 1.91 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.11 2.28 7.95 -52.49 -0.42 1.86 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -34.78 357.17 -7.33 -42.11 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.09 Total: 5.35 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -2.94 Total: -24.74 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.32 Total: -37.29 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -5.08 Total: 21.37 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.78 -7.33 -42.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490712572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.420 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds