Wall clock time and date at job start Tue Mar 31 2020 08:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47447 * 206.78555 * 3 2 1 5 5 C 1.46499 * 120.00349 * 270.00829 * 4 3 2 6 6 C 1.47203 * 109.46753 * 269.99728 * 5 4 3 7 7 C 5.38475 * 150.86355 * 155.95613 * 2 1 3 8 8 C 1.34777 * 119.99559 * 89.99605 * 4 3 2 9 9 O 1.21283 * 120.00046 * 0.02562 * 8 4 3 10 10 C 1.50698 * 119.99686 * 180.02562 * 8 4 3 11 11 C 1.53005 * 109.46990 * 180.02562 * 10 8 4 12 12 H 1.08994 * 109.46934 * 305.97546 * 11 10 8 13 13 C 1.50700 * 109.47299 * 65.97885 * 11 10 8 14 14 H 1.08008 * 119.99531 * 26.90748 * 13 11 10 15 15 C 1.37869 * 120.00160 * 206.90965 * 13 11 10 16 16 N 1.31508 * 120.00032 * 353.27812 * 15 13 11 17 17 Si 1.86806 * 120.00073 * 173.54969 * 15 13 11 18 18 H 1.48497 * 109.46895 * 179.72442 * 17 15 13 19 19 H 1.48495 * 109.46957 * 299.72695 * 17 15 13 20 20 H 1.48501 * 109.46761 * 59.72686 * 17 15 13 21 21 C 1.50705 * 109.47056 * 185.97689 * 11 10 8 22 22 C 1.38237 * 120.00118 * 294.44966 * 21 11 10 23 23 C 1.38237 * 119.99818 * 179.78603 * 22 21 11 24 24 C 1.38236 * 120.00003 * 0.44191 * 23 22 21 25 25 C 1.38236 * 119.99991 * 359.81061 * 24 23 22 26 26 C 1.38228 * 119.99825 * 114.71859 * 21 11 10 27 27 H 4.40646 * 5.51432 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.46939 * 86.78782 * 3 2 1 29 29 H 1.08999 * 109.47236 * 326.79210 * 3 2 1 30 30 H 1.09007 * 109.46909 * 29.99033 * 5 4 3 31 31 H 1.08999 * 109.47455 * 149.99624 * 5 4 3 32 32 H 6.33345 * 154.05414 * 149.33735 * 2 1 3 33 33 H 1.09000 * 109.47229 * 60.00363 * 10 8 4 34 34 H 1.09003 * 109.47630 * 300.00294 * 10 8 4 35 35 H 0.97008 * 120.00303 * 354.69126 * 16 15 13 36 36 H 1.08005 * 119.99967 * 359.97438 * 22 21 11 37 37 H 1.07999 * 119.99448 * 180.27078 * 23 22 21 38 38 H 1.07997 * 119.99991 * 179.83259 * 24 23 22 39 39 H 1.07993 * 119.99965 * 180.02562 * 25 24 23 40 40 H 1.07999 * 120.00249 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2339 0.6224 5 6 3.3773 2.4223 -0.1988 6 6 4.7676 2.4080 -0.6825 7 6 5.8774 2.3943 -1.0682 8 6 3.3584 1.2751 1.9507 9 8 3.1570 0.2911 2.6306 10 6 3.8597 2.5438 2.5911 11 6 4.0304 2.3227 4.0955 12 1 3.0975 1.9470 4.5156 13 6 5.1291 1.3193 4.3343 14 1 5.9227 1.2050 3.6106 15 6 5.1211 0.5471 5.4764 16 7 4.2326 0.7758 6.4186 17 14 6.3772 -0.8192 5.6890 18 1 6.1613 -1.4911 6.9955 19 1 6.2230 -1.8083 4.5921 20 1 7.7457 -0.2440 5.6482 21 6 4.3898 3.6281 4.7574 22 6 5.5954 4.2401 4.4697 23 6 5.9231 5.4397 5.0735 24 6 5.0491 6.0226 5.9720 25 6 3.8457 5.4080 6.2636 26 6 3.5162 4.2106 5.6565 27 1 -1.0502 -0.0004 0.0000 28 1 3.0093 -0.0568 -1.0261 29 1 3.0097 -0.8590 0.5628 30 1 2.6965 2.4214 -1.0501 31 1 3.2100 3.3180 0.3994 32 1 6.8691 2.3836 -1.4132 33 1 3.1410 3.3454 2.4206 34 1 4.8196 2.8172 2.1532 35 1 3.6331 1.5350 6.3461 36 1 6.2801 3.7825 3.7708 37 1 6.8631 5.9199 4.8453 38 1 5.3062 6.9584 6.4458 39 1 3.1628 5.8636 6.9652 40 1 2.5760 3.7305 5.8842 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490712572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:31 Heat of formation + Delta-G solvation = 82.276895 kcal Electronic energy + Delta-G solvation = -23008.424424 eV Core-core repulsion = 19755.689125 eV Total energy + Delta-G solvation = -3252.735299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13514 -39.93156 -37.37669 -36.14110 -34.65349 -33.35181 -33.07679 -31.61974 -30.73548 -29.00512 -27.74662 -26.37263 -24.52830 -23.20085 -21.81114 -20.80237 -19.68838 -18.90031 -18.57996 -18.08234 -17.28427 -17.18143 -16.73554 -15.95205 -15.68331 -15.66886 -15.06596 -14.76912 -14.69946 -14.39586 -14.36577 -14.16928 -14.00516 -13.83573 -13.49029 -13.18494 -12.73617 -12.64568 -12.10661 -11.97742 -11.83536 -11.73904 -11.52812 -11.38899 -11.17361 -11.12701 -10.76950 -10.57489 -10.37873 -10.07232 -9.65020 -9.28544 -8.46311 -6.13183 0.66885 0.72320 1.24957 1.45832 1.56239 1.68241 1.72402 1.83929 1.90091 1.98748 2.58199 2.60333 3.09596 3.33858 3.41997 3.57998 3.76821 4.11253 4.19619 4.26210 4.27155 4.33606 4.37476 4.43526 4.49987 4.53937 4.65054 4.80812 4.84820 5.01773 5.04608 5.08611 5.21095 5.38146 5.40693 5.48202 5.73817 5.80800 5.92935 6.21441 6.27745 6.31675 6.39613 6.62787 6.69066 6.76035 7.30754 7.61791 8.93880 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.010917 B = 0.005828 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.144556 B = 4803.649888 C = 5715.347550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.239 4.239 3 C 0.221 3.779 4 N -0.614 5.614 5 C 0.218 3.782 6 C -0.241 4.241 7 C -0.176 4.176 8 C 0.517 3.483 9 O -0.549 6.549 10 C -0.105 4.105 11 C 0.076 3.924 12 H 0.004 0.996 13 C -0.557 4.557 14 H 0.036 0.964 15 C -0.024 4.024 16 N -0.942 5.942 17 Si 1.095 2.905 18 H -0.287 1.287 19 H -0.286 1.286 20 H -0.266 1.266 21 C -0.057 4.057 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.143 4.143 25 C -0.124 4.124 26 C -0.152 4.152 27 H 0.249 0.751 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.244 0.756 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.261 0.739 36 H 0.110 0.890 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.998 8.949 -14.968 17.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.240 4.240 3 C 0.100 3.900 4 N -0.347 5.347 5 C 0.097 3.903 6 C -0.242 4.242 7 C -0.194 4.194 8 C 0.306 3.694 9 O -0.425 6.425 10 C -0.145 4.145 11 C 0.056 3.944 12 H 0.022 0.978 13 C -0.595 4.595 14 H 0.055 0.945 15 C -0.223 4.223 16 N -0.580 5.580 17 Si 0.920 3.080 18 H -0.213 1.213 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.057 4.057 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.161 4.161 25 C -0.142 4.142 26 C -0.170 4.170 27 H 0.266 0.734 28 H 0.147 0.853 29 H 0.098 0.902 30 H 0.147 0.853 31 H 0.129 0.871 32 H 0.260 0.740 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.128 0.872 37 H 0.160 0.840 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.641 7.177 -13.579 15.372 hybrid contribution -0.666 0.663 -0.741 1.197 sum -1.307 7.840 -14.320 16.378 Atomic orbital electron populations 1.25771 0.96784 0.97708 0.99523 1.23941 0.95648 1.02695 1.01696 1.18280 0.83834 0.87761 1.00136 1.48121 1.66424 1.13522 1.06678 1.18644 0.87738 0.88023 0.95900 1.23927 0.96684 1.02713 1.00914 1.25780 0.96699 0.97656 0.99258 1.21126 0.75976 0.90680 0.81607 1.90732 1.50842 1.38067 1.62831 1.21571 1.01815 0.94062 0.97005 1.17683 0.96022 0.90235 0.90414 0.97791 1.21755 1.09615 1.21503 1.06642 0.94532 1.26726 1.00467 1.02106 0.92986 1.70814 1.21098 1.30582 1.35487 0.83231 0.74553 0.74440 0.75799 1.21300 1.21247 1.19103 1.20600 0.94358 0.94627 0.96146 1.20976 0.95941 0.95719 1.01306 1.21399 1.00227 0.95340 0.97223 1.21314 0.94247 1.01202 0.99300 1.21298 0.98081 0.95042 0.99732 1.21124 0.99612 0.97018 0.99288 0.73435 0.85282 0.90168 0.85319 0.87068 0.73960 0.88966 0.89041 0.92900 0.87156 0.83967 0.83460 0.84611 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.38 19.25 74.32 1.43 -2.95 16 2 C -0.24 -6.84 13.68 31.12 0.43 -6.41 16 3 C 0.22 6.37 5.88 84.57 0.50 6.87 16 4 N -0.61 -19.31 2.39 -842.96 -2.02 -21.32 16 5 C 0.22 4.93 5.69 84.57 0.48 5.41 16 6 C -0.24 -5.74 13.53 31.11 0.42 -5.32 16 7 C -0.18 -3.72 19.26 74.31 1.43 -2.29 16 8 C 0.52 21.90 7.42 87.66 0.65 22.55 16 9 O -0.55 -29.59 14.60 -3.04 -0.04 -29.64 16 10 C -0.10 -4.24 3.51 29.85 0.10 -4.14 16 11 C 0.08 3.83 1.23 -12.28 -0.02 3.81 16 12 H 0.00 0.23 6.59 -2.39 -0.02 0.21 16 13 C -0.56 -31.77 6.35 25.60 0.16 -31.61 16 14 H 0.04 2.08 7.82 -2.91 -0.02 2.06 16 15 C -0.02 -1.47 5.45 84.65 0.46 -1.01 16 16 N -0.94 -60.80 13.56 21.44 0.29 -60.51 16 17 Si 1.10 54.82 29.91 68.60 2.05 56.87 16 18 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 19 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 C -0.06 -2.57 4.53 -19.87 -0.09 -2.66 16 22 C -0.12 -4.89 8.90 22.27 0.20 -4.69 16 23 C -0.12 -4.09 10.05 22.27 0.22 -3.87 16 24 C -0.14 -4.42 10.05 22.27 0.22 -4.19 16 25 C -0.12 -4.29 10.05 22.27 0.22 -4.07 16 26 C -0.15 -6.49 9.18 22.27 0.20 -6.29 16 27 H 0.25 3.84 7.80 -4.41 -0.03 3.81 16 28 H 0.13 2.69 8.07 -2.39 -0.02 2.67 16 29 H 0.08 2.74 7.42 -2.39 -0.02 2.72 16 30 H 0.13 2.08 8.07 -2.38 -0.02 2.06 16 31 H 0.11 2.33 6.44 -2.39 -0.02 2.31 16 32 H 0.24 3.32 7.80 -4.42 -0.03 3.29 16 33 H 0.09 3.19 7.40 -2.39 -0.02 3.17 16 34 H 0.09 3.50 7.78 -2.39 -0.02 3.48 16 35 H 0.26 16.81 6.24 -92.70 -0.58 16.23 16 36 H 0.11 4.43 7.85 -2.91 -0.02 4.41 16 37 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 38 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 39 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 40 H 0.10 4.22 7.95 -2.91 -0.02 4.20 16 Total: -1.00 -80.93 357.17 8.53 -72.41 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 1.21 Total: 23.04 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 7.03 Total: -40.85 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -1.73 Total: -81.83 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.04 Total: -29.64 kcal Atomic # 14 Polarization: 54.82 SS G_CDS: 2.05 Total: 56.87 kcal Total: -80.93 8.53 -72.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490712572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.684 kcal (2) G-P(sol) polarization free energy of solvation -80.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds