Wall clock time and date at job start Tue Mar 31 2020 08:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47079 * 157.39774 * 3 2 1 5 5 C 1.36939 * 119.99686 * 263.92787 * 4 3 2 6 6 H 1.08001 * 119.99968 * 199.39084 * 5 4 3 7 7 C 1.38815 * 120.00169 * 19.38284 * 5 4 3 8 8 N 1.31614 * 119.99988 * 22.28321 * 7 5 4 9 9 Si 1.86801 * 120.00040 * 202.28140 * 7 5 4 10 10 H 1.48505 * 109.47081 * 60.00216 * 9 7 5 11 11 H 1.48497 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47031 * 300.00235 * 9 7 5 13 13 C 1.46496 * 120.00321 * 83.92344 * 4 3 2 14 14 C 1.53000 * 109.47357 * 90.00468 * 13 4 3 15 15 H 1.09001 * 109.47171 * 59.99543 * 14 13 4 16 16 O 1.42906 * 109.46592 * 299.99813 * 14 13 4 17 17 C 1.50698 * 109.47216 * 180.02562 * 14 13 4 18 18 C 1.36125 * 120.17331 * 94.99721 * 17 14 13 19 19 C 1.39332 * 120.98782 * 179.97438 * 18 17 14 20 20 C 1.36128 * 120.99080 * 0.02603 * 19 18 17 21 21 C 1.40501 * 119.65037 * 359.97438 * 20 19 18 22 22 C 1.40550 * 121.28740 * 180.02562 * 21 20 19 23 23 C 1.36084 * 119.65324 * 179.97438 * 22 21 20 24 24 C 1.39380 * 120.99638 * 0.02562 * 23 22 21 25 25 C 1.36094 * 120.99095 * 359.95664 * 24 23 22 26 26 C 1.40505 * 120.17171 * 274.97618 * 17 14 13 27 27 H 4.40641 * 5.51407 * 180.02562 * 4 1 2 28 28 H 1.08996 * 109.47559 * 37.39769 * 3 2 1 29 29 H 1.09006 * 109.47480 * 277.39455 * 3 2 1 30 30 H 0.97003 * 120.00144 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47353 * 330.00122 * 13 4 3 32 32 H 1.09005 * 109.47125 * 210.00336 * 13 4 3 33 33 H 0.96698 * 114.00263 * 300.00496 * 16 14 13 34 34 H 1.08001 * 119.51103 * 359.97438 * 18 17 14 35 35 H 1.08000 * 119.50767 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.17323 * 179.70388 * 20 19 18 37 37 H 1.08001 * 120.17526 * 359.93058 * 22 21 20 38 38 H 1.08006 * 119.50549 * 179.97438 * 23 22 21 39 39 H 1.07998 * 119.50464 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.17237 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.2760 -0.5309 5 6 3.4801 1.3802 -1.8516 6 1 4.1182 2.1871 -2.1804 7 6 3.0113 0.4487 -2.7677 8 7 1.9272 -0.2484 -2.5013 9 14 3.9191 0.1845 -4.3788 10 1 5.3087 -0.2572 -4.0974 11 1 3.2205 -0.8557 -5.1758 12 1 3.9494 1.4566 -5.1443 13 6 3.2507 2.4399 0.3511 14 6 4.6440 2.4630 0.9828 15 1 5.3979 2.5246 0.1980 16 8 4.8428 1.2685 1.7416 17 6 4.7642 3.6599 1.8906 18 6 4.5184 3.5350 3.2237 19 6 4.6250 4.6301 4.0785 20 6 4.9774 5.8569 3.6053 21 6 5.2388 6.0246 2.2351 22 6 5.6057 7.2756 1.7097 23 6 5.8519 7.4002 0.3771 24 6 5.7453 6.3047 -0.4780 25 6 5.3928 5.0783 -0.0051 26 6 5.1309 4.9105 1.3655 27 1 -1.0502 -0.0003 0.0003 28 1 3.0097 -0.8155 -0.6241 29 1 3.0094 -0.1314 1.0191 30 1 1.5993 -0.8991 -3.1416 31 1 2.4969 2.3783 1.1360 32 1 3.0990 3.3511 -0.2276 33 1 4.2061 1.1477 2.4592 34 1 4.2367 2.5727 3.6248 35 1 4.4250 4.5039 5.1322 36 1 5.0514 6.6978 4.2790 37 1 5.6912 8.1336 2.3601 38 1 6.1332 8.3627 -0.0241 39 1 5.9457 6.4310 -1.5317 40 1 5.3146 4.2384 -0.6795 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491203854.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:11 Heat of formation + Delta-G solvation = 77.515846 kcal Electronic energy + Delta-G solvation = -23135.981126 eV Core-core repulsion = 19883.039373 eV Total energy + Delta-G solvation = -3252.941753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.48589 -37.72764 -36.16966 -35.14209 -32.89144 -31.54347 -31.18728 -30.20552 -29.35093 -27.60006 -25.90165 -24.07299 -23.07073 -22.81772 -21.21760 -20.34554 -17.49405 -17.38215 -17.25102 -16.69505 -16.17761 -15.44332 -14.95517 -14.76870 -14.37056 -14.00579 -13.72826 -13.66164 -13.38470 -13.27377 -13.00619 -12.72751 -12.49081 -11.88128 -11.59528 -11.45431 -11.24289 -11.15109 -10.92538 -10.84020 -10.67698 -10.57427 -10.29161 -9.98858 -9.87613 -9.65930 -8.92487 -8.68753 -8.52244 -8.43245 -7.75395 -6.91982 -5.78975 -3.21138 0.62193 1.10774 2.14362 3.08537 3.37583 3.44733 3.45841 4.12924 4.22558 4.39512 4.52807 4.64906 4.81496 4.90710 4.93206 5.02954 5.12468 5.21310 5.34951 5.46393 5.50105 5.52839 5.64734 5.78513 5.84956 5.90833 5.97701 6.06589 6.16920 6.28914 6.33208 6.45758 6.54349 6.61271 6.64736 6.77419 6.82217 6.96274 7.10336 7.25119 7.43781 7.72705 8.06524 8.28430 9.09299 9.20684 9.76095 10.23067 11.23799 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.004959 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.558030 B = 5645.467657 C = 6798.589108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.097 4.097 3 C 0.271 3.729 4 N -0.574 5.574 5 C -0.270 4.270 6 H 0.072 0.928 7 C 0.008 3.992 8 N -0.884 5.884 9 Si 0.898 3.102 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.128 3.872 14 C 0.120 3.880 15 H 0.109 0.891 16 O -0.545 6.545 17 C -0.083 4.083 18 C -0.123 4.123 19 C -0.107 4.107 20 C -0.122 4.122 21 C -0.049 4.049 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.124 4.124 25 C -0.096 4.096 26 C -0.044 4.044 27 H 0.189 0.811 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.255 0.745 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.362 0.638 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.818 11.288 11.064 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 C -0.100 4.100 3 C 0.146 3.854 4 N -0.293 5.293 5 C -0.399 4.399 6 H 0.090 0.910 7 C -0.192 4.192 8 N -0.526 5.526 9 Si 0.727 3.273 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.000 4.000 14 C 0.058 3.942 15 H 0.127 0.873 16 O -0.349 6.349 17 C -0.084 4.084 18 C -0.141 4.141 19 C -0.125 4.125 20 C -0.140 4.140 21 C -0.049 4.049 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.142 4.142 25 C -0.114 4.114 26 C -0.044 4.044 27 H 0.207 0.793 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.209 0.791 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.235 11.063 10.483 16.467 hybrid contribution -0.448 0.064 -0.678 0.815 sum 5.787 11.127 9.805 15.919 Atomic orbital electron populations 1.24188 0.95349 1.04388 1.08251 1.24419 0.95438 0.96520 0.93631 1.17741 0.82362 0.89762 0.95556 1.43832 1.74372 1.04899 1.06149 1.19084 1.24796 1.12699 0.83280 0.91020 1.24908 0.96015 1.00564 0.97724 1.70126 1.19234 1.27156 1.36097 0.86445 0.79744 0.77657 0.83421 1.20922 1.21706 1.20991 1.21355 0.92412 0.92066 0.94181 1.21835 1.01651 0.79881 0.90820 0.87341 1.86660 1.57667 1.42176 1.48425 1.20746 0.96983 0.95382 0.95295 1.20557 1.01486 0.98911 0.93130 1.20776 0.99304 0.92834 0.99581 1.20917 1.01400 0.97676 0.94051 1.18071 0.99925 0.93319 0.93557 1.20948 1.00618 0.96133 0.95671 1.20835 1.00024 0.98702 0.93717 1.20861 1.00456 0.92887 0.99976 1.21282 0.97436 0.98267 0.94389 1.17904 1.00212 0.92731 0.93601 0.79349 0.89153 0.93935 0.93454 0.93978 0.92273 0.79115 0.86073 0.86228 0.86016 0.85976 0.86305 0.85976 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.95 19.25 29.55 0.57 -6.38 16 2 C -0.10 -2.37 11.50 -37.12 -0.43 -2.79 16 3 C 0.27 6.37 5.20 -6.83 -0.04 6.34 16 4 N -0.57 -13.65 2.41 -176.57 -0.43 -14.08 16 5 C -0.27 -7.08 9.63 -15.06 -0.14 -7.22 16 6 H 0.07 1.82 7.92 -52.49 -0.42 1.40 16 7 C 0.01 0.21 4.82 -17.43 -0.08 0.12 16 8 N -0.88 -25.02 9.61 55.49 0.53 -24.49 16 9 Si 0.90 21.33 29.61 -169.99 -5.03 16.30 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.13 2.53 5.35 -4.04 -0.02 2.51 16 14 C 0.12 2.06 2.88 -27.88 -0.08 1.98 16 15 H 0.11 2.02 6.70 -51.93 -0.35 1.67 16 16 O -0.54 -9.25 11.61 -35.23 -0.41 -9.66 16 17 C -0.08 -1.26 5.08 -104.53 -0.53 -1.79 16 18 C -0.12 -1.63 9.24 -39.93 -0.37 -2.00 16 19 C -0.11 -1.25 9.95 -39.93 -0.40 -1.65 16 20 C -0.12 -1.45 9.77 -39.49 -0.39 -1.83 16 21 C -0.05 -0.66 5.74 -106.83 -0.61 -1.27 16 22 C -0.12 -1.35 9.77 -39.48 -0.39 -1.73 16 23 C -0.11 -1.31 9.95 -39.93 -0.40 -1.70 16 24 C -0.12 -1.58 9.95 -39.93 -0.40 -1.98 16 25 C -0.10 -1.42 9.19 -39.48 -0.36 -1.78 16 26 C -0.04 -0.67 5.74 -106.84 -0.61 -1.28 16 27 H 0.19 3.64 7.80 -54.08 -0.42 3.22 16 28 H 0.09 2.35 6.59 -51.93 -0.34 2.01 16 29 H 0.04 0.87 6.80 -51.93 -0.35 0.52 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.06 1.21 7.95 -51.93 -0.41 0.79 16 33 H 0.36 4.93 7.09 45.56 0.32 5.25 16 34 H 0.12 1.38 6.34 -52.49 -0.33 1.05 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.14 2.07 6.49 -52.49 -0.34 1.73 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -30.90 337.91 -9.23 -40.13 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -4.31 Total: 9.16 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -4.68 Total: -22.46 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.11 Total: -38.56 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.41 Total: -9.66 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.90 -9.23 -40.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491203854.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.647 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds