Wall clock time and date at job start Tue Mar 31 2020 08:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47079 * 157.39774 * 3 2 1 5 5 C 1.36939 * 119.99686 * 263.92787 * 4 3 2 6 6 H 1.08001 * 119.99968 * 199.39084 * 5 4 3 7 7 C 1.38815 * 120.00169 * 19.38284 * 5 4 3 8 8 N 1.31614 * 119.99988 * 22.28321 * 7 5 4 9 9 Si 1.86801 * 120.00040 * 202.28140 * 7 5 4 10 10 H 1.48505 * 109.47081 * 60.00216 * 9 7 5 11 11 H 1.48497 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47031 * 300.00235 * 9 7 5 13 13 C 1.46496 * 120.00321 * 83.92344 * 4 3 2 14 14 C 1.53000 * 109.47357 * 90.00468 * 13 4 3 15 15 H 1.09001 * 109.47171 * 59.99543 * 14 13 4 16 16 O 1.42906 * 109.46592 * 299.99813 * 14 13 4 17 17 C 1.50698 * 109.47216 * 180.02562 * 14 13 4 18 18 C 1.36125 * 120.17331 * 94.99721 * 17 14 13 19 19 C 1.39332 * 120.98782 * 179.97438 * 18 17 14 20 20 C 1.36128 * 120.99080 * 0.02603 * 19 18 17 21 21 C 1.40501 * 119.65037 * 359.97438 * 20 19 18 22 22 C 1.40550 * 121.28740 * 180.02562 * 21 20 19 23 23 C 1.36084 * 119.65324 * 179.97438 * 22 21 20 24 24 C 1.39380 * 120.99638 * 0.02562 * 23 22 21 25 25 C 1.36094 * 120.99095 * 359.95664 * 24 23 22 26 26 C 1.40505 * 120.17171 * 274.97618 * 17 14 13 27 27 H 4.40641 * 5.51407 * 180.02562 * 4 1 2 28 28 H 1.08996 * 109.47559 * 37.39769 * 3 2 1 29 29 H 1.09006 * 109.47480 * 277.39455 * 3 2 1 30 30 H 0.97003 * 120.00144 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47353 * 330.00122 * 13 4 3 32 32 H 1.09005 * 109.47125 * 210.00336 * 13 4 3 33 33 H 0.96698 * 114.00263 * 300.00496 * 16 14 13 34 34 H 1.08001 * 119.51103 * 359.97438 * 18 17 14 35 35 H 1.08000 * 119.50767 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.17323 * 179.70388 * 20 19 18 37 37 H 1.08001 * 120.17526 * 359.93058 * 22 21 20 38 38 H 1.08006 * 119.50549 * 179.97438 * 23 22 21 39 39 H 1.07998 * 119.50464 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.17237 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.2760 -0.5309 5 6 3.4801 1.3802 -1.8516 6 1 4.1182 2.1871 -2.1804 7 6 3.0113 0.4487 -2.7677 8 7 1.9272 -0.2484 -2.5013 9 14 3.9191 0.1845 -4.3788 10 1 5.3087 -0.2572 -4.0974 11 1 3.2205 -0.8557 -5.1758 12 1 3.9494 1.4566 -5.1443 13 6 3.2507 2.4399 0.3511 14 6 4.6440 2.4630 0.9828 15 1 5.3979 2.5246 0.1980 16 8 4.8428 1.2685 1.7416 17 6 4.7642 3.6599 1.8906 18 6 4.5184 3.5350 3.2237 19 6 4.6250 4.6301 4.0785 20 6 4.9774 5.8569 3.6053 21 6 5.2388 6.0246 2.2351 22 6 5.6057 7.2756 1.7097 23 6 5.8519 7.4002 0.3771 24 6 5.7453 6.3047 -0.4780 25 6 5.3928 5.0783 -0.0051 26 6 5.1309 4.9105 1.3655 27 1 -1.0502 -0.0003 0.0003 28 1 3.0097 -0.8155 -0.6241 29 1 3.0094 -0.1314 1.0191 30 1 1.5993 -0.8991 -3.1416 31 1 2.4969 2.3783 1.1360 32 1 3.0990 3.3511 -0.2276 33 1 4.2061 1.1477 2.4592 34 1 4.2367 2.5727 3.6248 35 1 4.4250 4.5039 5.1322 36 1 5.0514 6.6978 4.2790 37 1 5.6912 8.1336 2.3601 38 1 6.1332 8.3627 -0.0241 39 1 5.9457 6.4310 -1.5317 40 1 5.3146 4.2384 -0.6795 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491203854.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:10 Heat of formation + Delta-G solvation = 60.958299 kcal Electronic energy + Delta-G solvation = -23136.699115 eV Core-core repulsion = 19883.039373 eV Total energy + Delta-G solvation = -3253.659742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.51081 -39.09236 -37.44430 -36.61462 -34.01967 -33.48516 -32.92831 -31.19073 -30.46919 -29.05657 -27.82850 -25.54602 -24.12978 -23.80300 -22.87574 -21.53383 -19.35488 -18.50883 -18.34444 -18.16823 -17.47573 -16.92315 -16.55427 -16.03979 -15.71325 -15.50284 -15.29082 -14.74307 -14.69391 -14.51380 -14.21943 -14.18024 -13.58592 -13.40013 -13.17349 -12.83216 -12.72614 -12.63800 -12.45250 -12.25765 -12.13189 -12.00561 -11.82494 -11.72019 -11.25546 -10.79069 -10.74533 -10.54966 -10.33209 -9.49360 -8.95267 -8.64316 -7.83213 -5.26183 -0.36010 0.13320 1.13844 1.45561 1.49376 1.54993 2.12939 2.31722 2.51643 2.58915 3.18133 3.28240 3.53353 3.56996 3.86771 3.94327 4.02443 4.09214 4.12143 4.17936 4.27806 4.35671 4.45392 4.53608 4.55521 4.66200 4.83929 4.92896 4.97026 5.03899 5.13401 5.26768 5.31042 5.35664 5.40180 5.57066 5.62937 5.65621 5.67464 5.77903 5.97544 6.15760 6.28185 6.85952 7.09547 7.35593 7.81653 8.25490 9.17037 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.004959 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.558030 B = 5645.467657 C = 6798.589108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.135 4.135 3 C 0.276 3.724 4 N -0.589 5.589 5 C -0.273 4.273 6 H 0.070 0.930 7 C -0.042 4.042 8 N -0.910 5.910 9 Si 0.956 3.044 10 H -0.281 1.281 11 H -0.296 1.296 12 H -0.279 1.279 13 C 0.135 3.865 14 C 0.142 3.858 15 H 0.084 0.916 16 O -0.557 6.557 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.071 4.071 22 C -0.109 4.109 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.130 4.130 26 C -0.063 4.063 27 H 0.221 0.779 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.247 0.753 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.377 0.623 34 H 0.136 0.864 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.134 0.866 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.226 13.560 13.077 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.138 4.138 3 C 0.151 3.849 4 N -0.308 5.308 5 C -0.402 4.402 6 H 0.088 0.912 7 C -0.239 4.239 8 N -0.554 5.554 9 Si 0.785 3.215 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.204 1.204 13 C 0.008 3.992 14 C 0.081 3.919 15 H 0.102 0.898 16 O -0.363 6.363 17 C -0.114 4.114 18 C -0.135 4.135 19 C -0.133 4.133 20 C -0.130 4.130 21 C -0.071 4.071 22 C -0.127 4.127 23 C -0.139 4.139 24 C -0.140 4.140 25 C -0.148 4.148 26 C -0.063 4.063 27 H 0.238 0.762 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.226 0.774 34 H 0.154 0.846 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.174 0.826 38 H 0.168 0.832 39 H 0.152 0.848 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.660 13.364 12.529 19.492 hybrid contribution -0.565 -0.518 -1.189 1.415 sum 6.094 12.846 11.340 18.187 Atomic orbital electron populations 1.25006 0.96368 1.03025 1.06949 1.24802 0.96268 0.97821 0.94865 1.17637 0.82404 0.88714 0.96141 1.43981 1.74760 1.06093 1.05953 1.19360 1.23943 1.12332 0.84608 0.91177 1.25542 0.96801 1.00952 1.00558 1.70277 1.20532 1.27864 1.36751 0.85515 0.78456 0.77298 0.80215 1.20752 1.22276 1.20448 1.21395 0.94305 0.90008 0.93449 1.21249 0.98661 0.81173 0.90856 0.89841 1.86616 1.58375 1.42309 1.49031 1.20506 1.00342 0.94610 0.95908 1.20875 0.99822 1.00392 0.92459 1.21135 0.99034 0.92222 1.00947 1.21366 0.99128 0.98836 0.93637 1.18428 1.00688 0.93573 0.94410 1.21376 0.98704 0.96347 0.96226 1.21185 0.99652 0.99377 0.93715 1.21143 0.99093 0.92680 1.01079 1.21230 1.00309 0.98683 0.94603 1.18096 1.00729 0.93477 0.93972 0.76207 0.92279 0.91279 0.94376 0.93432 0.93731 0.77385 0.84596 0.82979 0.82591 0.82557 0.83155 0.84761 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.38 19.25 74.32 1.43 -11.95 16 2 C -0.13 -6.63 11.50 31.12 0.36 -6.27 16 3 C 0.28 13.34 5.20 84.57 0.44 13.78 16 4 N -0.59 -28.91 2.41 -712.55 -1.72 -30.63 16 5 C -0.27 -14.82 9.63 84.03 0.81 -14.01 16 6 H 0.07 3.73 7.92 -2.91 -0.02 3.70 16 7 C -0.04 -2.32 4.82 84.86 0.41 -1.91 16 8 N -0.91 -52.99 9.61 21.65 0.21 -52.78 16 9 Si 0.96 45.18 29.61 68.60 2.03 47.21 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.14 5.53 5.35 86.38 0.46 5.99 16 14 C 0.14 5.06 2.88 29.85 0.09 5.15 16 15 H 0.08 3.35 6.70 -2.39 -0.02 3.34 16 16 O -0.56 -19.07 11.61 -148.98 -1.73 -20.79 16 17 C -0.11 -3.45 5.08 -19.80 -0.10 -3.55 16 18 C -0.12 -2.93 9.24 22.04 0.20 -2.72 16 19 C -0.12 -2.33 9.95 22.04 0.22 -2.11 16 20 C -0.11 -2.24 9.77 22.33 0.22 -2.02 16 21 C -0.07 -1.77 5.74 -21.30 -0.12 -1.89 16 22 C -0.11 -2.19 9.77 22.33 0.22 -1.97 16 23 C -0.12 -2.48 9.95 22.04 0.22 -2.26 16 24 C -0.12 -3.08 9.95 22.05 0.22 -2.86 16 25 C -0.13 -4.02 9.19 22.33 0.21 -3.81 16 26 C -0.06 -1.90 5.74 -21.30 -0.12 -2.02 16 27 H 0.22 8.11 7.80 -4.41 -0.03 8.08 16 28 H 0.06 3.21 6.59 -2.39 -0.02 3.19 16 29 H 0.07 2.87 6.80 -2.38 -0.02 2.85 16 30 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.05 1.86 8.07 -2.39 -0.02 1.84 16 32 H 0.04 1.92 7.95 -2.38 -0.02 1.90 16 33 H 0.38 10.02 7.09 -74.06 -0.52 9.49 16 34 H 0.14 2.84 6.34 -2.91 -0.02 2.82 16 35 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.11 3.82 6.49 -2.91 -0.02 3.81 16 Total: -1.00 -68.39 337.91 4.47 -63.92 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.53 Total: 27.51 kcal Atomic # 6 Polarization: -39.59 SS G_CDS: 5.15 Total: -34.43 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -1.51 Total: -83.41 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -1.73 Total: -20.79 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -68.39 4.47 -63.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491203854.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.879 kcal (2) G-P(sol) polarization free energy of solvation -68.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds