Wall clock time and date at job start Tue Mar 31 2020 08:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46969 * 112.32625 * 3 2 1 5 5 C 1.36935 * 119.99835 * 263.91833 * 4 3 2 6 6 H 1.08002 * 119.99792 * 199.22925 * 5 4 3 7 7 C 1.38817 * 119.99989 * 19.23346 * 5 4 3 8 8 N 1.31617 * 120.00148 * 22.40146 * 7 5 4 9 9 Si 1.86800 * 119.99726 * 202.40071 * 7 5 4 10 10 H 1.48504 * 109.46812 * 60.00335 * 9 7 5 11 11 H 1.48504 * 109.47069 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47433 * 299.99873 * 9 7 5 13 13 C 1.46495 * 119.99989 * 83.92055 * 4 3 2 14 14 C 1.53001 * 109.47548 * 90.00073 * 13 4 3 15 15 O 1.42898 * 109.46978 * 64.99757 * 14 13 4 16 16 C 1.35886 * 117.00058 * 180.02562 * 15 14 13 17 17 C 1.39850 * 119.56515 * 0.22589 * 16 15 14 18 18 C 1.35981 * 120.92882 * 180.28214 * 17 16 15 19 19 C 1.40588 * 119.73376 * 359.75037 * 18 17 16 20 20 C 1.40527 * 121.22252 * 180.02562 * 19 18 17 21 21 C 1.36094 * 119.67644 * 180.02562 * 20 19 18 22 22 C 1.39383 * 120.99167 * 359.94765 * 21 20 19 23 23 C 1.36086 * 120.97800 * 0.02562 * 22 21 20 24 24 C 1.40569 * 119.66155 * 0.02562 * 23 22 21 25 25 C 1.36570 * 119.56827 * 180.02562 * 16 15 14 26 26 H 4.40641 * 5.51382 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.47316 * 352.32603 * 3 2 1 28 28 H 1.08998 * 109.47113 * 232.32425 * 3 2 1 29 29 H 0.96996 * 119.99826 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47198 * 329.99877 * 13 4 3 31 31 H 1.09007 * 109.47159 * 210.00185 * 13 4 3 32 32 H 1.09006 * 109.46782 * 305.00354 * 14 13 4 33 33 H 1.08998 * 109.47314 * 185.00071 * 14 13 4 34 34 H 1.07999 * 119.54057 * 0.02562 * 17 16 15 35 35 H 1.08010 * 120.13676 * 179.77193 * 18 17 16 36 36 H 1.08001 * 120.16413 * 0.02562 * 20 19 18 37 37 H 1.08003 * 119.50829 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.50713 * 180.02562 * 22 21 20 39 39 H 1.08006 * 120.16646 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.18593 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5256 -1.2777 5 6 3.4811 -0.3358 -2.2841 6 1 4.1173 0.0022 -3.0888 7 6 3.0151 -1.6433 -2.2700 8 7 1.9312 -1.9484 -1.5886 9 14 3.9265 -2.9698 -3.2183 10 1 5.3161 -3.0786 -2.7057 11 1 3.2314 -4.2703 -3.0424 12 1 3.9570 -2.6154 -4.6600 13 6 3.2509 1.9720 -1.4788 14 6 4.6439 2.4359 -1.0485 15 8 5.6262 1.8543 -1.9080 16 6 6.9253 2.1664 -1.6601 17 6 7.2394 3.0191 -0.5971 18 6 8.5294 3.3543 -0.3277 19 6 9.5656 2.8346 -1.1232 20 6 10.9096 3.1598 -0.8724 21 6 11.8875 2.6390 -1.6627 22 6 11.5774 1.7848 -2.7195 23 6 10.2876 1.4472 -2.9920 24 6 9.2501 1.9662 -2.1982 25 6 7.9074 1.6399 -2.4497 26 1 -1.0501 0.0001 0.0003 27 1 3.0098 -1.0176 0.1372 28 1 3.0090 0.6289 0.8134 29 1 1.6059 -2.8622 -1.5785 30 1 2.4967 2.4840 -0.8811 31 1 3.0995 2.2058 -2.5326 32 1 4.8296 2.1235 -0.0208 33 1 4.7014 3.5224 -1.1140 34 1 6.4460 3.4204 0.0159 35 1 8.7572 4.0170 0.4942 36 1 11.1651 3.8197 -0.0566 37 1 12.9195 2.8911 -1.4679 38 1 12.3726 1.3849 -3.3312 39 1 10.0622 0.7837 -3.8139 40 1 7.6526 0.9795 -3.2654 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491718827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:07 Heat of formation + Delta-G solvation = 90.305576 kcal Electronic energy + Delta-G solvation = -22434.400398 eV Core-core repulsion = 19182.013250 eV Total energy + Delta-G solvation = -3252.387149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.43035 -38.63218 -36.20150 -35.19296 -32.66444 -31.63736 -31.53088 -29.75532 -29.26224 -27.93610 -26.00555 -24.03845 -23.24202 -22.35729 -21.87324 -20.57030 -18.11402 -17.36275 -17.18714 -16.63694 -16.22146 -15.62829 -15.37506 -14.68080 -14.64075 -14.03912 -13.69986 -13.65438 -13.38051 -13.24927 -13.11787 -12.97509 -12.72434 -11.99570 -11.73944 -11.59504 -11.19491 -11.18846 -11.04539 -10.87146 -10.69428 -10.48228 -10.31762 -10.21813 -9.91286 -9.65749 -8.94014 -8.72442 -8.42661 -8.30596 -7.48499 -6.96707 -5.73377 -3.15014 0.61248 1.14303 2.14447 3.09106 3.42974 3.49055 3.51780 3.70471 4.15535 4.21574 4.37090 4.58591 4.63778 4.85577 4.93838 4.98308 5.21958 5.30217 5.33992 5.36390 5.41311 5.47274 5.62350 5.80526 5.82115 5.84471 5.93024 5.95268 6.03018 6.19939 6.26803 6.33174 6.49178 6.54675 6.58811 6.60577 6.72198 6.87653 7.01450 7.19131 7.40389 7.87170 7.89438 8.33473 9.13770 9.20680 9.81119 10.26778 11.30516 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018508 B = 0.003948 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.457082 B = 7090.908838 C = 8278.938791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.097 4.097 3 C 0.267 3.733 4 N -0.580 5.580 5 C -0.252 4.252 6 H 0.079 0.921 7 C 0.002 3.998 8 N -0.891 5.891 9 Si 0.897 3.103 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.284 1.284 13 C 0.146 3.854 14 C 0.040 3.960 15 O -0.283 6.283 16 C 0.148 3.852 17 C -0.186 4.186 18 C -0.073 4.073 19 C -0.092 4.092 20 C -0.093 4.093 21 C -0.139 4.139 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.009 4.009 25 C -0.167 4.167 26 H 0.190 0.810 27 H 0.093 0.907 28 H 0.034 0.966 29 H 0.253 0.747 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.407 11.090 2.786 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.100 4.100 3 C 0.142 3.858 4 N -0.300 5.300 5 C -0.381 4.381 6 H 0.096 0.904 7 C -0.197 4.197 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.210 1.210 11 H -0.219 1.219 12 H -0.210 1.210 13 C 0.018 3.982 14 C -0.039 4.039 15 O -0.194 6.194 16 C 0.101 3.899 17 C -0.205 4.205 18 C -0.091 4.091 19 C -0.092 4.092 20 C -0.111 4.111 21 C -0.157 4.157 22 C -0.131 4.131 23 C -0.132 4.132 24 C -0.009 4.009 25 C -0.186 4.186 26 H 0.207 0.793 27 H 0.111 0.889 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.235 10.781 2.629 18.049 hybrid contribution 0.051 -0.762 -0.340 0.836 sum 14.285 10.018 2.289 17.598 Atomic orbital electron populations 1.24181 0.95332 1.06849 1.05453 1.24278 0.95289 0.94892 0.95575 1.17743 0.82887 0.99251 0.85941 1.44020 1.74367 0.99633 1.11940 1.19194 1.23708 0.91237 1.03958 0.90366 1.24917 0.96188 0.98789 0.99803 1.70119 1.19596 1.18452 1.45294 0.86443 0.79763 0.81394 0.79707 1.21039 1.21885 1.20987 1.20848 0.90385 0.86545 1.00442 1.23917 0.90632 0.95486 0.93816 1.86382 1.11534 1.67313 1.54208 1.18906 0.85627 0.92504 0.92839 1.21169 0.97905 1.01806 0.99589 1.20826 0.91806 0.98319 0.98184 1.18016 0.93769 1.00183 0.97272 1.20944 0.91750 0.99281 0.99135 1.20724 0.99119 0.99267 0.96632 1.20799 0.96455 0.98123 0.97688 1.21003 0.92305 1.00290 0.99619 1.17793 0.92898 0.95685 0.94523 1.20186 0.89924 1.05281 1.03206 0.79273 0.88890 0.94759 0.93628 0.91943 0.92069 0.92731 0.93447 0.85249 0.85551 0.86025 0.86454 0.86309 0.85599 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.78 19.25 29.55 0.57 -6.21 16 2 C -0.10 -2.35 11.50 -37.12 -0.43 -2.78 16 3 C 0.27 6.24 5.41 -6.82 -0.04 6.20 16 4 N -0.58 -13.90 2.47 -176.56 -0.44 -14.34 16 5 C -0.25 -6.77 9.16 -15.06 -0.14 -6.90 16 6 H 0.08 2.12 7.74 -52.49 -0.41 1.72 16 7 C 0.00 0.04 4.82 -17.43 -0.08 -0.04 16 8 N -0.89 -25.49 9.61 55.49 0.53 -24.95 16 9 Si 0.90 21.98 29.61 -169.99 -5.03 16.95 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.15 2.83 6.10 -4.04 -0.02 2.80 16 14 C 0.04 0.66 5.07 37.16 0.19 0.84 16 15 O -0.28 -5.36 9.42 -19.38 -0.18 -5.54 16 16 C 0.15 2.49 6.63 -39.58 -0.26 2.22 16 17 C -0.19 -2.61 8.93 -39.79 -0.36 -2.96 16 18 C -0.07 -0.92 9.76 -39.51 -0.39 -1.30 16 19 C -0.09 -1.23 5.74 -106.81 -0.61 -1.85 16 20 C -0.09 -1.03 9.77 -39.49 -0.39 -1.41 16 21 C -0.14 -1.44 9.95 -39.93 -0.40 -1.83 16 22 C -0.11 -1.22 9.95 -39.93 -0.40 -1.61 16 23 C -0.11 -1.44 9.77 -39.48 -0.39 -1.82 16 24 C -0.01 -0.13 5.74 -106.84 -0.61 -0.74 16 25 C -0.17 -2.71 9.68 -39.35 -0.38 -3.09 16 26 H 0.19 3.60 7.80 -54.09 -0.42 3.18 16 27 H 0.09 2.40 6.58 -51.93 -0.34 2.06 16 28 H 0.03 0.69 8.12 -51.93 -0.42 0.27 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 31 H 0.06 1.23 8.04 -51.93 -0.42 0.81 16 32 H 0.05 0.88 7.62 -51.93 -0.40 0.48 16 33 H 0.05 0.64 7.65 -51.93 -0.40 0.25 16 34 H 0.13 1.58 6.21 -52.49 -0.33 1.25 16 35 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 40 H 0.13 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -31.16 344.15 -9.28 -40.45 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.22 Total: 2.74 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -4.13 Total: -20.49 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.10 Total: -39.29 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.18 Total: -5.54 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.16 -9.28 -40.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491718827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.752 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds