Wall clock time and date at job start Tue Mar 31 2020 08:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46969 * 112.32625 * 3 2 1 5 5 C 1.36935 * 119.99835 * 263.91833 * 4 3 2 6 6 H 1.08002 * 119.99792 * 199.22925 * 5 4 3 7 7 C 1.38817 * 119.99989 * 19.23346 * 5 4 3 8 8 N 1.31617 * 120.00148 * 22.40146 * 7 5 4 9 9 Si 1.86800 * 119.99726 * 202.40071 * 7 5 4 10 10 H 1.48504 * 109.46812 * 60.00335 * 9 7 5 11 11 H 1.48504 * 109.47069 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47433 * 299.99873 * 9 7 5 13 13 C 1.46495 * 119.99989 * 83.92055 * 4 3 2 14 14 C 1.53001 * 109.47548 * 90.00073 * 13 4 3 15 15 O 1.42898 * 109.46978 * 64.99757 * 14 13 4 16 16 C 1.35886 * 117.00058 * 180.02562 * 15 14 13 17 17 C 1.39850 * 119.56515 * 0.22589 * 16 15 14 18 18 C 1.35981 * 120.92882 * 180.28214 * 17 16 15 19 19 C 1.40588 * 119.73376 * 359.75037 * 18 17 16 20 20 C 1.40527 * 121.22252 * 180.02562 * 19 18 17 21 21 C 1.36094 * 119.67644 * 180.02562 * 20 19 18 22 22 C 1.39383 * 120.99167 * 359.94765 * 21 20 19 23 23 C 1.36086 * 120.97800 * 0.02562 * 22 21 20 24 24 C 1.40569 * 119.66155 * 0.02562 * 23 22 21 25 25 C 1.36570 * 119.56827 * 180.02562 * 16 15 14 26 26 H 4.40641 * 5.51382 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.47316 * 352.32603 * 3 2 1 28 28 H 1.08998 * 109.47113 * 232.32425 * 3 2 1 29 29 H 0.96996 * 119.99826 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47198 * 329.99877 * 13 4 3 31 31 H 1.09007 * 109.47159 * 210.00185 * 13 4 3 32 32 H 1.09006 * 109.46782 * 305.00354 * 14 13 4 33 33 H 1.08998 * 109.47314 * 185.00071 * 14 13 4 34 34 H 1.07999 * 119.54057 * 0.02562 * 17 16 15 35 35 H 1.08010 * 120.13676 * 179.77193 * 18 17 16 36 36 H 1.08001 * 120.16413 * 0.02562 * 20 19 18 37 37 H 1.08003 * 119.50829 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.50713 * 180.02562 * 22 21 20 39 39 H 1.08006 * 120.16646 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.18593 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5256 -1.2777 5 6 3.4811 -0.3358 -2.2841 6 1 4.1173 0.0022 -3.0888 7 6 3.0151 -1.6433 -2.2700 8 7 1.9312 -1.9484 -1.5886 9 14 3.9265 -2.9698 -3.2183 10 1 5.3161 -3.0786 -2.7057 11 1 3.2314 -4.2703 -3.0424 12 1 3.9570 -2.6154 -4.6600 13 6 3.2509 1.9720 -1.4788 14 6 4.6439 2.4359 -1.0485 15 8 5.6262 1.8543 -1.9080 16 6 6.9253 2.1664 -1.6601 17 6 7.2394 3.0191 -0.5971 18 6 8.5294 3.3543 -0.3277 19 6 9.5656 2.8346 -1.1232 20 6 10.9096 3.1598 -0.8724 21 6 11.8875 2.6390 -1.6627 22 6 11.5774 1.7848 -2.7195 23 6 10.2876 1.4472 -2.9920 24 6 9.2501 1.9662 -2.1982 25 6 7.9074 1.6399 -2.4497 26 1 -1.0501 0.0001 0.0003 27 1 3.0098 -1.0176 0.1372 28 1 3.0090 0.6289 0.8134 29 1 1.6059 -2.8622 -1.5785 30 1 2.4967 2.4840 -0.8811 31 1 3.0995 2.2058 -2.5326 32 1 4.8296 2.1235 -0.0208 33 1 4.7014 3.5224 -1.1140 34 1 6.4460 3.4204 0.0159 35 1 8.7572 4.0170 0.4942 36 1 11.1651 3.8197 -0.0566 37 1 12.9195 2.8911 -1.4679 38 1 12.3726 1.3849 -3.3312 39 1 10.0622 0.7837 -3.8139 40 1 7.6526 0.9795 -3.2654 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491718827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:06 Heat of formation + Delta-G solvation = 75.253658 kcal Electronic energy + Delta-G solvation = -22435.053099 eV Core-core repulsion = 19182.013250 eV Total energy + Delta-G solvation = -3253.039849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47390 -39.81604 -37.87906 -36.33357 -33.77812 -33.47843 -33.22625 -30.74397 -30.62885 -29.23819 -27.91940 -25.54553 -24.33992 -23.57280 -22.88853 -22.09428 -19.49129 -19.02748 -18.20526 -18.14981 -17.47092 -17.26096 -16.47726 -16.31083 -15.63189 -15.53282 -15.27028 -15.20515 -14.68986 -14.41223 -14.30920 -14.09232 -13.81419 -13.46292 -13.33021 -13.15234 -12.84153 -12.65116 -12.41963 -12.25884 -12.18861 -12.00848 -11.92896 -11.56252 -11.41243 -10.78629 -10.68497 -10.66053 -10.32872 -9.28956 -8.90274 -8.55986 -7.81685 -5.22452 -0.34799 0.14565 1.15909 1.43692 1.46897 1.53226 2.11224 2.32045 2.47911 2.52781 2.60585 3.22048 3.30025 3.69836 3.76529 3.94293 4.02046 4.09625 4.10516 4.28024 4.33876 4.38850 4.41753 4.48878 4.50719 4.53493 4.72240 4.89553 4.92060 4.99163 5.09704 5.12062 5.29458 5.30735 5.32410 5.43082 5.64098 5.65241 5.65946 5.74617 5.86318 6.11906 6.32743 6.66453 7.13810 7.36988 7.85124 8.26331 9.19478 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.018508 B = 0.003948 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.457082 B = 7090.908838 C = 8278.938791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.135 4.135 3 C 0.270 3.730 4 N -0.595 5.595 5 C -0.248 4.248 6 H 0.066 0.934 7 C -0.045 4.045 8 N -0.913 5.913 9 Si 0.949 3.051 10 H -0.287 1.287 11 H -0.295 1.295 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.048 3.952 15 O -0.319 6.319 16 C 0.126 3.874 17 C -0.200 4.200 18 C -0.060 4.060 19 C -0.110 4.110 20 C -0.094 4.094 21 C -0.139 4.139 22 C -0.104 4.104 23 C -0.141 4.141 24 C -0.028 4.028 25 C -0.194 4.194 26 H 0.222 0.778 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.245 0.755 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.148 0.852 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.128 0.872 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.588 13.073 4.064 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.138 4.138 3 C 0.145 3.855 4 N -0.315 5.315 5 C -0.378 4.378 6 H 0.084 0.916 7 C -0.241 4.241 8 N -0.558 5.558 9 Si 0.778 3.222 10 H -0.213 1.213 11 H -0.221 1.221 12 H -0.208 1.208 13 C 0.017 3.983 14 C -0.029 4.029 15 O -0.232 6.232 16 C 0.080 3.920 17 C -0.218 4.218 18 C -0.078 4.078 19 C -0.110 4.110 20 C -0.111 4.111 21 C -0.156 4.156 22 C -0.122 4.122 23 C -0.159 4.159 24 C -0.028 4.028 25 C -0.213 4.213 26 H 0.238 0.762 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.165 0.835 35 H 0.182 0.818 36 H 0.172 0.828 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.145 0.855 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.436 12.799 3.904 21.194 hybrid contribution -0.463 -1.281 -0.754 1.557 sum 15.973 11.517 3.150 19.943 Atomic orbital electron populations 1.24997 0.96347 1.05425 1.04161 1.24639 0.96092 0.96202 0.96825 1.17666 0.82932 0.98227 0.86677 1.44159 1.74623 1.01209 1.11556 1.19282 1.22535 0.91992 1.03971 0.91591 1.25445 0.97046 1.00262 1.01381 1.70256 1.20695 1.17894 1.46983 0.85625 0.78461 0.79346 0.78737 1.21347 1.22126 1.20798 1.21034 0.92825 0.84223 1.00203 1.23712 0.88482 0.97232 0.93467 1.86298 1.12948 1.68597 1.55352 1.19136 0.84540 0.93992 0.94366 1.21311 0.99328 1.01925 0.99236 1.21264 0.90835 0.97416 0.98251 1.18389 0.95484 1.00091 0.97026 1.21334 0.90542 0.99308 0.99954 1.21186 1.00781 0.98048 0.95620 1.21204 0.96174 0.97106 0.97714 1.21175 0.93032 1.01461 1.00265 1.18015 0.92390 0.96645 0.95772 1.20257 0.91321 1.06204 1.03527 0.76175 0.92093 0.91464 0.94542 0.89857 0.93438 0.92165 0.89949 0.83475 0.81761 0.82779 0.83075 0.83619 0.85453 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.88 19.25 74.32 1.43 -11.45 16 2 C -0.13 -6.48 11.50 31.13 0.36 -6.12 16 3 C 0.27 12.74 5.41 84.57 0.46 13.20 16 4 N -0.60 -28.94 2.47 -712.52 -1.76 -30.69 16 5 C -0.25 -13.70 9.16 84.03 0.77 -12.93 16 6 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 7 C -0.05 -2.57 4.82 84.86 0.41 -2.16 16 8 N -0.91 -53.47 9.61 21.65 0.21 -53.26 16 9 Si 0.95 46.74 29.61 68.60 2.03 48.77 16 10 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 11 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 12 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 13 C 0.14 5.54 6.10 86.38 0.53 6.06 16 14 C 0.05 1.56 5.07 71.98 0.36 1.93 16 15 O -0.32 -12.46 9.42 -92.27 -0.87 -13.33 16 16 C 0.13 4.32 6.63 22.27 0.15 4.47 16 17 C -0.20 -5.35 8.93 22.14 0.20 -5.15 16 18 C -0.06 -1.35 9.76 22.32 0.22 -1.13 16 19 C -0.11 -2.73 5.74 -21.28 -0.12 -2.85 16 20 C -0.09 -1.72 9.77 22.33 0.22 -1.51 16 21 C -0.14 -2.32 9.95 22.05 0.22 -2.10 16 22 C -0.10 -2.00 9.95 22.04 0.22 -1.78 16 23 C -0.14 -3.53 9.77 22.34 0.22 -3.32 16 24 C -0.03 -0.83 5.74 -21.30 -0.12 -0.95 16 25 C -0.19 -6.69 9.68 22.42 0.22 -6.48 16 26 H 0.22 7.91 7.80 -4.41 -0.03 7.87 16 27 H 0.06 3.25 6.58 -2.39 -0.02 3.23 16 28 H 0.07 2.65 8.12 -2.39 -0.02 2.63 16 29 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.08 2.83 8.07 -2.38 -0.02 2.81 16 31 H 0.05 1.94 8.04 -2.38 -0.02 1.92 16 32 H 0.06 1.87 7.62 -2.38 -0.02 1.85 16 33 H 0.08 2.08 7.65 -2.39 -0.02 2.06 16 34 H 0.15 3.26 6.21 -2.91 -0.02 3.25 16 35 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 38 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.13 2.96 8.06 -2.91 -0.02 2.93 16 40 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -69.84 344.15 6.36 -63.48 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 1.02 Total: 17.30 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: 5.73 Total: -32.26 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -1.55 Total: -83.96 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.87 Total: -13.33 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -69.84 6.36 -63.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491718827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.733 kcal (2) G-P(sol) polarization free energy of solvation -69.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds