Wall clock time and date at job start Tue Mar 31 2020 08:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47447 * 2 1 4 4 H 1.08997 * 109.47300 * 177.96440 * 3 2 1 5 5 C 1.50696 * 109.47080 * 57.96385 * 3 2 1 6 6 H 1.08000 * 120.00147 * 240.00116 * 5 3 2 7 7 C 1.37878 * 119.99908 * 60.00176 * 5 3 2 8 8 N 1.31516 * 120.00138 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 120.00234 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46755 * 60.00109 * 9 7 5 11 11 H 1.48500 * 109.46915 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46862 * 300.00379 * 9 7 5 13 13 N 1.46903 * 109.47224 * 297.96568 * 3 2 1 14 14 C 1.46895 * 110.99987 * 273.75498 * 13 3 2 15 15 C 1.50706 * 109.47003 * 174.76110 * 14 13 3 16 16 C 1.38352 * 119.85753 * 259.72204 * 15 14 13 17 17 C 1.37929 * 120.17779 * 179.72123 * 16 15 14 18 18 C 1.39649 * 119.89771 * 0.57635 * 17 16 15 19 19 C 1.47735 * 120.13592 * 179.72373 * 18 17 16 20 20 O 1.21467 * 120.00095 * 179.97438 * 19 18 17 21 21 O 1.34713 * 119.99754 * 359.97438 * 19 18 17 22 22 C 1.45206 * 116.99584 * 180.02562 * 21 19 18 23 23 C 1.39581 * 119.72547 * 359.69876 * 18 17 16 24 24 C 1.38202 * 119.81773 * 0.02562 * 23 18 17 25 25 F 1.35098 * 119.94502 * 180.02562 * 24 23 18 26 26 H 1.09004 * 109.47380 * 294.45282 * 1 2 3 27 27 H 1.08999 * 109.47442 * 174.44512 * 1 2 3 28 28 H 1.09005 * 109.47259 * 54.44917 * 1 2 3 29 29 H 1.08994 * 109.47044 * 120.00486 * 2 1 3 30 30 H 1.09000 * 109.47118 * 239.99737 * 2 1 3 31 31 H 0.96995 * 120.00144 * 179.97438 * 8 7 5 32 32 H 1.00900 * 111.00218 * 149.79541 * 13 3 2 33 33 H 1.09005 * 109.47061 * 294.75381 * 14 13 3 34 34 H 1.08997 * 109.47274 * 54.75896 * 14 13 3 35 35 H 1.08005 * 119.91207 * 0.02562 * 16 15 14 36 36 H 1.08000 * 120.04947 * 180.27260 * 17 16 15 37 37 H 1.08993 * 109.46893 * 180.02562 * 22 21 19 38 38 H 1.09004 * 109.46630 * 299.99522 * 22 21 19 39 39 H 1.08993 * 109.47428 * 59.99320 * 22 21 19 40 40 H 1.08000 * 120.08733 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1294 1.4426 0.0365 5 6 1.4970 2.1673 1.2044 6 1 0.8799 3.0440 1.0742 7 6 1.7878 1.7111 2.4726 8 7 2.5396 0.6438 2.6312 9 14 1.1153 2.6100 3.9657 10 1 -0.3689 2.6103 3.9162 11 1 1.5697 1.9247 5.2023 12 1 1.6108 4.0098 3.9654 13 7 1.5910 2.1207 -1.2233 14 6 2.5281 1.8856 -2.3298 15 6 1.9719 2.4860 -3.5952 16 6 1.3464 1.6750 -4.5254 17 6 0.8299 2.2185 -5.6832 18 6 0.9494 3.5891 -5.9224 19 6 0.4035 4.1757 -7.1635 20 8 0.5084 5.3683 -7.3689 21 8 -0.2106 3.3880 -8.0675 22 6 -0.7222 4.0325 -9.2639 23 6 1.5863 4.4026 -4.9838 24 6 2.0945 3.8468 -3.8251 25 9 2.7110 4.6318 -2.9146 26 1 -0.3634 0.4254 0.9355 27 1 -0.3634 -1.0228 -0.0995 28 1 -0.3634 0.5975 -0.8361 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 2.7446 0.3231 3.5234 32 1 1.4617 3.1083 -1.0625 33 1 3.4870 2.3495 -2.0986 34 1 2.6668 0.8132 -2.4669 35 1 1.2580 0.6143 -4.3422 36 1 0.3382 1.5841 -6.4058 37 1 -1.1918 3.2870 -9.9055 38 1 -1.4583 4.7862 -8.9841 39 1 0.0991 4.5081 -9.7998 40 1 1.6815 5.4634 -5.1627 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522011502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:25 Heat of formation + Delta-G solvation = -110.230024 kcal Electronic energy + Delta-G solvation = -23274.880592 eV Core-core repulsion = 19583.028342 eV Total energy + Delta-G solvation = -3691.852250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.82101 -40.74993 -38.92448 -36.72503 -36.27799 -33.40035 -31.56222 -30.78008 -30.20386 -28.16927 -26.70579 -24.97289 -23.20292 -22.99592 -22.32453 -20.91950 -19.06239 -18.50600 -17.42204 -16.71954 -16.61581 -16.21093 -16.01770 -15.56367 -15.30655 -14.86808 -14.16522 -14.08033 -13.81947 -13.69165 -13.58960 -13.29427 -12.97701 -12.49019 -12.29440 -12.18046 -12.07781 -11.67015 -11.58591 -11.16115 -11.09592 -10.91616 -10.83731 -10.69603 -10.41390 -10.14923 -9.77977 -9.41797 -9.13472 -8.86006 -8.74764 -8.48893 -7.35816 -6.04290 -4.09677 0.44655 1.09233 2.29853 2.36913 3.30548 3.35010 3.38032 3.50747 4.21429 4.38783 4.43753 4.62739 4.79573 4.80812 4.88406 4.88907 5.13263 5.19709 5.26872 5.46021 5.55077 5.72623 5.85465 5.96413 6.01481 6.09798 6.11146 6.38627 6.48823 6.66809 6.70681 6.82015 7.19077 7.22466 7.45286 7.47007 7.70201 7.75389 7.79969 8.18940 8.30393 8.57917 8.97543 9.55086 11.01764 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.026945 B = 0.003184 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.893341 B = 8790.987605 C = 9169.209156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.217 3.783 4 H 0.003 0.997 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.088 3.912 15 C -0.055 4.055 16 C -0.091 4.091 17 C -0.071 4.071 18 C -0.115 4.115 19 C 0.514 3.486 20 O -0.506 6.506 21 O -0.353 6.353 22 C 0.037 3.963 23 C -0.091 4.091 24 C 0.093 3.907 25 F -0.129 7.129 26 H 0.052 0.948 27 H 0.013 0.987 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.010 0.990 31 H 0.261 0.739 32 H 0.334 0.666 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 2.089 -19.889 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.020 0.980 5 C -0.553 4.553 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.309 5.309 14 C -0.041 4.041 15 C -0.057 4.057 16 C -0.109 4.109 17 C -0.089 4.089 18 C -0.116 4.116 19 C 0.359 3.641 20 O -0.395 6.395 21 O -0.270 6.270 22 C -0.057 4.057 23 C -0.110 4.110 24 C 0.073 3.927 25 F -0.107 7.107 26 H 0.071 0.929 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.496 1.838 -19.960 20.347 hybrid contribution 0.432 1.340 1.139 1.811 sum -3.064 3.178 -18.822 19.333 Atomic orbital electron populations 1.21441 0.97432 0.97146 1.01653 1.21431 0.95159 0.98046 0.99367 1.19153 0.93464 0.91647 0.84789 0.97978 1.21124 1.31847 1.12026 0.90287 0.92321 1.24866 0.95024 0.94998 0.98831 1.69869 1.37249 1.23082 1.22561 0.86626 0.79456 0.79784 0.81967 1.20174 1.21329 1.20341 1.60806 1.46306 1.16682 1.07103 1.20951 0.94224 1.00494 0.88436 1.20527 0.96238 0.91541 0.97383 1.20987 0.96675 1.00825 0.92418 1.21475 0.96777 0.93373 0.97296 1.18689 1.05224 0.94341 0.93351 1.21111 0.75001 0.84669 0.83307 1.90837 1.55185 1.16270 1.77242 1.86545 1.68185 1.41656 1.30591 1.23297 0.99242 0.99133 0.84013 1.21086 0.96827 1.01205 0.91860 1.17330 0.98613 0.88546 0.88237 1.91545 1.80195 1.73793 1.65212 0.92929 0.96816 0.93448 0.89565 0.97129 0.92860 0.84891 0.94397 0.89865 0.83857 0.83961 0.87860 0.91741 0.91788 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.46 37.16 0.35 -2.25 16 2 C -0.10 -2.36 5.57 -26.73 -0.15 -2.51 16 3 C 0.22 5.21 2.30 -68.87 -0.16 5.06 16 4 H 0.00 0.07 7.84 -51.93 -0.41 -0.34 16 5 C -0.51 -13.60 7.34 -34.44 -0.25 -13.85 16 6 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -24.73 11.34 55.43 0.63 -24.10 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -13.76 5.50 -109.22 -0.60 -14.36 16 14 C 0.09 1.49 5.29 -4.98 -0.03 1.47 16 15 C -0.06 -0.80 5.45 -104.46 -0.57 -1.37 16 16 C -0.09 -1.08 9.65 -39.65 -0.38 -1.46 16 17 C -0.07 -0.76 9.62 -39.17 -0.38 -1.14 16 18 C -0.11 -1.40 5.87 -104.99 -0.62 -2.01 16 19 C 0.51 6.30 7.90 34.61 0.27 6.57 16 20 O -0.51 -7.32 16.14 -19.24 -0.31 -7.63 16 21 O -0.35 -3.56 9.82 -40.53 -0.40 -3.96 16 22 C 0.04 0.25 10.56 101.05 1.07 1.32 16 23 C -0.09 -1.20 9.57 -39.09 -0.37 -1.57 16 24 C 0.09 1.35 7.23 -39.48 -0.29 1.06 16 25 F -0.13 -2.08 16.64 2.25 0.04 -2.04 16 26 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.99 7.50 -51.93 -0.39 0.61 16 29 H 0.09 2.25 6.13 -51.93 -0.32 1.93 16 30 H 0.01 0.22 7.43 -51.93 -0.39 -0.17 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.33 6.96 8.24 -39.29 -0.32 6.63 16 33 H 0.04 0.67 7.94 -51.93 -0.41 0.26 16 34 H 0.08 1.35 7.24 -51.93 -0.38 0.98 16 35 H 0.14 1.48 8.03 -52.48 -0.42 1.06 16 36 H 0.14 1.19 7.61 -52.49 -0.40 0.80 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.15 1.84 7.65 -52.49 -0.40 1.44 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -29.21 342.86 -7.53 -36.75 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.44 Total: 3.20 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -1.59 Total: -9.03 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.03 Total: -38.46 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.71 Total: -11.59 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.21 -7.53 -36.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522011502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.485 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds