Wall clock time and date at job start Tue Mar 31 2020 08:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47447 * 2 1 4 4 H 1.08997 * 109.47300 * 177.96440 * 3 2 1 5 5 C 1.50696 * 109.47080 * 57.96385 * 3 2 1 6 6 H 1.08000 * 120.00147 * 240.00116 * 5 3 2 7 7 C 1.37878 * 119.99908 * 60.00176 * 5 3 2 8 8 N 1.31516 * 120.00138 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 120.00234 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46755 * 60.00109 * 9 7 5 11 11 H 1.48500 * 109.46915 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46862 * 300.00379 * 9 7 5 13 13 N 1.46903 * 109.47224 * 297.96568 * 3 2 1 14 14 C 1.46895 * 110.99987 * 273.75498 * 13 3 2 15 15 C 1.50706 * 109.47003 * 174.76110 * 14 13 3 16 16 C 1.38352 * 119.85753 * 259.72204 * 15 14 13 17 17 C 1.37929 * 120.17779 * 179.72123 * 16 15 14 18 18 C 1.39649 * 119.89771 * 0.57635 * 17 16 15 19 19 C 1.47735 * 120.13592 * 179.72373 * 18 17 16 20 20 O 1.21467 * 120.00095 * 179.97438 * 19 18 17 21 21 O 1.34713 * 119.99754 * 359.97438 * 19 18 17 22 22 C 1.45206 * 116.99584 * 180.02562 * 21 19 18 23 23 C 1.39581 * 119.72547 * 359.69876 * 18 17 16 24 24 C 1.38202 * 119.81773 * 0.02562 * 23 18 17 25 25 F 1.35098 * 119.94502 * 180.02562 * 24 23 18 26 26 H 1.09004 * 109.47380 * 294.45282 * 1 2 3 27 27 H 1.08999 * 109.47442 * 174.44512 * 1 2 3 28 28 H 1.09005 * 109.47259 * 54.44917 * 1 2 3 29 29 H 1.08994 * 109.47044 * 120.00486 * 2 1 3 30 30 H 1.09000 * 109.47118 * 239.99737 * 2 1 3 31 31 H 0.96995 * 120.00144 * 179.97438 * 8 7 5 32 32 H 1.00900 * 111.00218 * 149.79541 * 13 3 2 33 33 H 1.09005 * 109.47061 * 294.75381 * 14 13 3 34 34 H 1.08997 * 109.47274 * 54.75896 * 14 13 3 35 35 H 1.08005 * 119.91207 * 0.02562 * 16 15 14 36 36 H 1.08000 * 120.04947 * 180.27260 * 17 16 15 37 37 H 1.08993 * 109.46893 * 180.02562 * 22 21 19 38 38 H 1.09004 * 109.46630 * 299.99522 * 22 21 19 39 39 H 1.08993 * 109.47428 * 59.99320 * 22 21 19 40 40 H 1.08000 * 120.08733 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1294 1.4426 0.0365 5 6 1.4970 2.1673 1.2044 6 1 0.8799 3.0440 1.0742 7 6 1.7878 1.7111 2.4726 8 7 2.5396 0.6438 2.6312 9 14 1.1153 2.6100 3.9657 10 1 -0.3689 2.6103 3.9162 11 1 1.5697 1.9247 5.2023 12 1 1.6108 4.0098 3.9654 13 7 1.5910 2.1207 -1.2233 14 6 2.5281 1.8856 -2.3298 15 6 1.9719 2.4860 -3.5952 16 6 1.3464 1.6750 -4.5254 17 6 0.8299 2.2185 -5.6832 18 6 0.9494 3.5891 -5.9224 19 6 0.4035 4.1757 -7.1635 20 8 0.5084 5.3683 -7.3689 21 8 -0.2106 3.3880 -8.0675 22 6 -0.7222 4.0325 -9.2639 23 6 1.5863 4.4026 -4.9838 24 6 2.0945 3.8468 -3.8251 25 9 2.7110 4.6318 -2.9146 26 1 -0.3634 0.4254 0.9355 27 1 -0.3634 -1.0228 -0.0995 28 1 -0.3634 0.5975 -0.8361 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 2.7446 0.3231 3.5234 32 1 1.4617 3.1083 -1.0625 33 1 3.4870 2.3495 -2.0986 34 1 2.6668 0.8132 -2.4669 35 1 1.2580 0.6143 -4.3422 36 1 0.3382 1.5841 -6.4058 37 1 -1.1918 3.2870 -9.9055 38 1 -1.4583 4.7862 -8.9841 39 1 0.0991 4.5081 -9.7998 40 1 1.6815 5.4634 -5.1627 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522011502.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:24 Heat of formation + Delta-G solvation = -126.398131 kcal Electronic energy + Delta-G solvation = -23275.581693 eV Core-core repulsion = 19583.028342 eV Total energy + Delta-G solvation = -3692.553352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.00527 -41.66482 -39.95597 -38.05988 -37.52752 -34.99495 -33.25900 -31.86646 -31.62362 -29.12119 -28.17986 -26.41734 -25.01929 -24.06081 -23.43806 -21.92946 -20.91545 -19.47272 -18.50565 -18.34610 -17.45166 -17.38795 -17.03883 -16.91992 -16.65675 -16.45954 -15.83101 -15.33166 -15.06331 -14.95180 -14.56688 -14.45012 -14.32341 -13.97811 -13.78168 -13.28256 -13.22147 -12.98615 -12.89641 -12.77995 -12.60803 -12.41473 -12.28171 -11.94056 -11.83332 -11.75211 -11.55873 -11.27035 -10.80732 -10.53939 -10.15386 -9.84110 -9.06835 -8.09825 -6.21350 -0.56253 0.09673 1.32230 1.42704 1.43119 1.50509 1.55405 2.41934 2.51945 3.18344 3.19277 3.44651 3.62366 3.67814 3.90906 3.95698 4.10566 4.31928 4.36338 4.49919 4.56483 4.64988 4.72791 4.75292 4.84464 4.88893 4.98624 5.00329 5.07875 5.23164 5.30942 5.33563 5.40696 5.58550 5.68448 5.71898 5.84383 5.92602 6.29210 6.42528 6.57717 6.73086 6.97996 7.46919 8.94926 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.026945 B = 0.003184 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.893341 B = 8790.987605 C = 9169.209156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.097 4.097 3 C 0.222 3.778 4 H -0.033 1.033 5 C -0.527 4.527 6 H 0.053 0.947 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.671 5.671 14 C 0.093 3.907 15 C -0.068 4.068 16 C -0.083 4.083 17 C -0.051 4.051 18 C -0.116 4.116 19 C 0.518 3.482 20 O -0.534 6.534 21 O -0.349 6.349 22 C 0.028 3.972 23 C -0.094 4.094 24 C 0.075 3.925 25 F -0.146 7.146 26 H 0.026 0.974 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.328 0.672 33 H 0.023 0.977 34 H 0.092 0.908 35 H 0.166 0.834 36 H 0.176 0.824 37 H 0.138 0.862 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.727 1.262 -21.799 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C 0.114 3.886 4 H -0.015 1.015 5 C -0.566 4.566 6 H 0.071 0.929 7 C -0.179 4.179 8 N -0.553 5.553 9 Si 0.776 3.224 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.301 5.301 14 C -0.036 4.036 15 C -0.070 4.070 16 C -0.101 4.101 17 C -0.069 4.069 18 C -0.117 4.117 19 C 0.364 3.636 20 O -0.426 6.426 21 O -0.265 6.265 22 C -0.064 4.064 23 C -0.113 4.113 24 C 0.055 3.945 25 F -0.124 7.124 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.041 0.959 34 H 0.111 0.889 35 H 0.184 0.816 36 H 0.193 0.807 37 H 0.156 0.844 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.032 1.003 -21.895 22.488 hybrid contribution 0.891 1.593 1.574 2.410 sum -4.140 2.596 -20.321 20.901 Atomic orbital electron populations 1.21301 0.96018 0.98583 1.00543 1.21297 0.96279 0.97107 0.98851 1.18947 0.91198 0.92570 0.85880 1.01545 1.21408 1.31623 1.12006 0.91515 0.92865 1.25558 0.95339 0.95689 1.01325 1.69994 1.38196 1.24174 1.22947 0.85729 0.78962 0.78676 0.78983 1.19663 1.21011 1.20105 1.60734 1.47013 1.15956 1.06394 1.20903 0.93121 1.01127 0.88483 1.20353 0.97923 0.91666 0.97054 1.21234 0.95367 1.01597 0.91881 1.21773 0.95223 0.92837 0.97068 1.18840 1.04713 0.95018 0.93169 1.21088 0.74682 0.84326 0.83509 1.90831 1.56375 1.17491 1.77866 1.86529 1.67520 1.41386 1.31085 1.23642 0.99335 1.00378 0.83085 1.21096 0.96986 1.01479 0.91704 1.17510 0.99598 0.88706 0.88651 1.91498 1.80714 1.74289 1.65935 0.95499 0.94417 0.92594 0.92545 0.95106 0.92961 0.85519 0.95857 0.88926 0.81607 0.80674 0.84411 0.91900 0.91709 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.53 9.46 71.98 0.68 -3.85 16 2 C -0.10 -4.48 5.57 30.59 0.17 -4.31 16 3 C 0.22 10.88 2.30 44.17 0.10 10.98 16 4 H -0.03 -1.82 7.84 -2.39 -0.02 -1.84 16 5 C -0.53 -28.32 7.34 25.60 0.19 -28.13 16 6 H 0.05 2.86 7.60 -2.91 -0.02 2.83 16 7 C 0.02 1.11 5.30 84.65 0.45 1.56 16 8 N -0.91 -51.75 11.34 21.45 0.24 -51.51 16 9 Si 0.95 43.45 29.54 68.60 2.03 45.48 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.67 -27.30 5.50 -499.47 -2.74 -30.04 16 14 C 0.09 3.12 5.29 85.56 0.45 3.57 16 15 C -0.07 -1.90 5.45 -19.76 -0.11 -2.01 16 16 C -0.08 -1.72 9.65 22.22 0.21 -1.51 16 17 C -0.05 -0.92 9.62 22.54 0.22 -0.70 16 18 C -0.12 -2.59 5.87 -20.10 -0.12 -2.71 16 19 C 0.52 11.68 7.90 70.33 0.56 12.23 16 20 O -0.53 -14.92 16.14 19.94 0.32 -14.60 16 21 O -0.35 -5.99 9.82 -56.23 -0.55 -6.54 16 22 C 0.03 0.31 10.56 113.37 1.20 1.51 16 23 C -0.09 -2.41 9.57 22.59 0.22 -2.20 16 24 C 0.07 2.18 7.23 22.34 0.16 2.34 16 25 F -0.15 -4.86 16.64 44.97 0.75 -4.11 16 26 H 0.03 1.24 7.37 -2.38 -0.02 1.22 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 2.24 7.50 -2.38 -0.02 2.23 16 29 H 0.06 2.97 6.13 -2.39 -0.01 2.96 16 30 H 0.03 1.27 7.43 -2.39 -0.02 1.25 16 31 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.33 13.93 8.24 -89.69 -0.74 13.19 16 33 H 0.02 0.85 7.94 -2.38 -0.02 0.83 16 34 H 0.09 2.91 7.24 -2.39 -0.02 2.89 16 35 H 0.17 2.74 8.03 -2.91 -0.02 2.72 16 36 H 0.18 2.05 7.61 -2.91 -0.02 2.03 16 37 H 0.14 0.56 8.14 -2.39 -0.02 0.55 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.15 3.70 7.65 -2.91 -0.02 3.67 16 Total: -1.00 -63.77 342.86 4.74 -59.03 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.32 Total: 15.53 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 4.38 Total: -13.22 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -2.50 Total: -81.55 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.23 Total: -21.14 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.75 Total: -4.11 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -63.77 4.74 -59.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522011502.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.371 kcal (2) G-P(sol) polarization free energy of solvation -63.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds