Wall clock time and date at job start Tue Mar 31 2020 06:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47475 * 2 1 4 4 C 1.50701 * 109.46497 * 119.99685 * 2 1 3 5 5 C 1.33821 * 124.51979 * 120.00312 * 4 2 1 6 6 C 1.37475 * 115.09744 * 179.72692 * 5 4 2 7 7 C 1.36644 * 113.29901 * 0.02562 * 6 5 4 8 8 C 1.46588 * 125.45673 * 179.97438 * 7 6 5 9 9 O 1.21697 * 120.00122 * 352.13349 * 8 7 6 10 10 N 1.34773 * 119.99703 * 172.12886 * 8 7 6 11 11 C 1.46501 * 120.00300 * 1.93268 * 10 8 7 12 12 C 1.50704 * 109.46878 * 82.15486 * 11 10 8 13 13 H 1.07996 * 120.00189 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99814 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99754 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00271 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47128 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47331 * 120.00180 * 16 14 12 19 19 H 1.48504 * 109.47314 * 240.00506 * 16 14 12 20 20 C 1.46504 * 119.99655 * 181.92770 * 10 8 7 21 21 C 1.52995 * 109.46885 * 114.96531 * 20 10 8 22 22 C 1.53007 * 109.46974 * 234.96274 * 20 10 8 23 23 S 1.70613 * 124.52543 * 299.69273 * 4 2 1 24 24 H 1.09000 * 109.47369 * 300.00560 * 1 2 3 25 25 H 1.09001 * 109.46891 * 60.00067 * 1 2 3 26 26 H 1.08996 * 109.47415 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46885 * 239.99248 * 2 1 3 28 28 H 1.09008 * 109.46947 * 299.99490 * 3 2 1 29 29 H 1.09000 * 109.47279 * 59.99384 * 3 2 1 30 30 H 1.08999 * 109.47182 * 180.02562 * 3 2 1 31 31 H 1.07998 * 122.44898 * 359.70700 * 5 4 2 32 32 H 1.08007 * 123.34735 * 179.97438 * 6 5 4 33 33 H 1.08996 * 109.46860 * 202.15207 * 11 10 8 34 34 H 1.08998 * 109.47186 * 322.15912 * 11 10 8 35 35 H 0.96999 * 119.99441 * 179.97438 * 15 14 12 36 36 H 1.08992 * 109.47474 * 354.95995 * 20 10 8 37 37 H 1.09001 * 109.47542 * 60.00073 * 21 20 10 38 38 H 1.09008 * 109.47346 * 179.97438 * 21 20 10 39 39 H 1.08999 * 109.47082 * 300.00002 * 21 20 10 40 40 H 1.09002 * 109.46966 * 60.00489 * 22 20 10 41 41 H 1.08999 * 109.46707 * 180.02562 * 22 20 10 42 42 H 1.09002 * 109.46858 * 300.00170 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 2.8047 -1.8029 1.2133 6 6 3.1554 -2.2887 2.4506 7 6 2.6427 -1.5563 3.4840 8 6 2.8477 -1.8359 4.9083 9 8 3.4000 -2.8640 5.2533 10 7 2.4247 -0.9542 5.8357 11 6 1.7224 0.2632 5.4225 12 6 0.2688 -0.0529 5.1810 13 1 -0.0955 -1.0598 5.3216 14 6 -0.5963 0.9436 4.7815 15 7 -0.1528 2.1700 4.6108 16 14 -2.3981 0.5521 4.4828 17 1 -2.6412 -0.8896 4.7434 18 1 -3.2398 1.3681 5.3943 19 1 -2.7460 0.8663 3.0737 20 6 2.6672 -1.2134 7.2571 21 6 3.6150 -0.1498 7.8150 22 6 1.3407 -1.1642 8.0180 23 16 1.6979 -0.2247 2.8316 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5140 -0.8899 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.1301 1.4424 -0.0005 31 1 3.1287 -2.2691 0.2946 32 1 3.7739 -3.1629 2.5918 33 1 1.8051 1.0146 6.2078 34 1 2.1682 0.6462 4.5046 35 1 -0.7613 2.8709 4.3293 36 1 3.1173 -2.1990 7.3751 37 1 3.1648 0.8359 7.6970 38 1 3.7951 -0.3423 8.8727 39 1 4.5599 -0.1849 7.2728 40 1 0.6655 -1.9220 7.6206 41 1 1.5212 -1.3566 9.0756 42 1 0.8906 -0.1784 7.9000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545518779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:10 Heat of formation + Delta-G solvation = -23.035694 kcal Electronic energy + Delta-G solvation = -22778.001532 eV Core-core repulsion = 19656.143488 eV Total energy + Delta-G solvation = -3121.858044 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.21112 -37.48205 -35.73866 -34.49678 -33.28781 -31.54012 -28.12672 -27.49213 -26.88219 -26.62061 -24.30388 -23.25138 -21.48551 -20.69092 -19.11778 -17.79288 -17.20993 -16.70425 -15.70294 -14.96236 -14.67280 -14.39620 -14.10916 -13.91130 -13.48611 -13.27104 -13.03124 -12.63366 -12.57246 -12.47186 -12.29857 -12.05172 -11.75828 -11.65097 -11.53587 -11.22369 -11.10484 -10.93545 -10.83805 -10.78983 -10.77572 -10.68528 -10.43976 -10.05359 -9.81760 -9.18847 -9.05463 -8.76896 -8.00252 -7.70568 -7.44485 -6.36997 -4.37956 1.40994 2.58849 3.03864 3.13350 3.15787 3.22129 3.27421 3.87617 4.06216 4.21785 4.97088 5.07525 5.23910 5.34611 5.44582 5.65469 5.67346 5.77602 5.80138 5.86244 6.03851 6.07833 6.09068 6.12308 6.13134 6.17890 6.31275 6.35014 6.36930 6.49401 6.54336 6.57689 6.68075 6.76909 6.92685 6.97842 7.00519 7.19312 7.46463 7.60493 7.78830 8.24460 8.63145 8.99693 9.21866 10.67114 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.008449 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.225637 B = 3313.031207 C = 4800.652451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.018 4.018 3 C -0.147 4.147 4 C -0.291 4.291 5 C -0.170 4.170 6 C -0.082 4.082 7 C -0.297 4.297 8 C 0.591 3.409 9 O -0.571 6.571 10 N -0.592 5.592 11 C 0.227 3.773 12 C -0.530 4.530 13 H 0.069 0.931 14 C 0.076 3.924 15 N -0.877 5.877 16 Si 0.885 3.115 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.277 1.277 20 C 0.137 3.863 21 C -0.159 4.159 22 C -0.152 4.152 23 S 0.406 5.594 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.054 0.946 34 H 0.040 0.960 35 H 0.269 0.731 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.505 -0.101 -3.530 4.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.038 4.038 3 C -0.205 4.205 4 C -0.411 4.411 5 C -0.201 4.201 6 C -0.117 4.117 7 C -0.418 4.418 8 C 0.380 3.620 9 O -0.454 6.454 10 N -0.323 5.323 11 C 0.104 3.896 12 C -0.572 4.572 13 H 0.087 0.913 14 C -0.129 4.129 15 N -0.513 5.513 16 Si 0.712 3.288 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.203 1.203 20 C 0.034 3.966 21 C -0.217 4.217 22 C -0.210 4.210 23 S 0.684 5.316 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.150 0.850 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.901 0.789 -2.818 3.490 hybrid contribution -0.242 -1.355 -0.992 1.697 sum 1.658 -0.565 -3.811 4.194 Atomic orbital electron populations 1.21941 0.94561 1.02015 1.02090 1.19528 0.95368 0.95185 0.93718 1.21931 1.01119 0.95293 1.02142 1.25782 1.05199 1.03027 1.07047 1.19573 1.04043 0.98866 0.97616 1.20338 1.00622 1.00010 0.90684 1.24700 1.12769 1.07269 0.97102 1.17055 0.77799 0.82851 0.84262 1.90676 1.46166 1.26758 1.81846 1.48110 1.55832 1.23039 1.05308 1.19614 0.91775 0.82406 0.95759 1.21545 0.92774 0.96543 1.46319 0.91277 1.24876 0.98898 0.94668 0.94507 1.69917 1.35893 1.00739 1.44772 0.86597 0.84599 0.79186 0.78433 1.19254 1.20559 1.20280 1.20875 0.95834 0.99435 0.80497 1.22143 0.99389 0.99962 1.00213 1.22057 0.96947 1.03904 0.98061 1.85917 1.38910 1.19815 0.86952 0.91878 0.92641 0.92566 0.91045 0.92644 0.91795 0.92610 0.86532 0.84963 0.92816 0.94304 0.92120 0.89334 0.91908 0.92177 0.92910 0.92486 0.93068 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.09 37.16 0.34 -1.87 16 2 C -0.02 -0.28 3.25 -91.77 -0.30 -0.57 16 3 C -0.15 -2.08 9.08 37.15 0.34 -1.74 16 4 C -0.29 -5.25 4.94 -35.86 -0.18 -5.42 16 5 C -0.17 -3.05 9.95 -41.41 -0.41 -3.46 16 6 C -0.08 -1.61 10.02 -40.44 -0.41 -2.02 16 7 C -0.30 -6.42 6.23 -36.79 -0.23 -6.65 16 8 C 0.59 13.52 7.56 -12.89 -0.10 13.43 16 9 O -0.57 -14.00 16.19 5.19 0.08 -13.91 16 10 N -0.59 -12.66 2.38 -169.04 -0.40 -13.06 16 11 C 0.23 5.07 3.87 -5.19 -0.02 5.05 16 12 C -0.53 -12.52 6.15 -34.44 -0.21 -12.74 16 13 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 14 C 0.08 1.81 5.01 -17.82 -0.09 1.72 16 15 N -0.88 -21.29 13.29 55.43 0.74 -20.55 16 16 Si 0.89 19.11 29.54 -169.99 -5.02 14.09 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 20 C 0.14 2.54 3.22 -67.93 -0.22 2.32 16 21 C -0.16 -2.51 9.26 37.16 0.34 -2.16 16 22 C -0.15 -2.62 8.69 37.16 0.32 -2.30 16 23 S 0.41 8.34 15.06 -107.50 -1.62 6.72 16 24 H 0.06 1.06 7.91 -51.93 -0.41 0.65 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.97 8.07 -51.93 -0.42 0.56 16 28 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.06 1.00 7.89 -51.93 -0.41 0.59 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.13 2.47 8.06 -52.48 -0.42 2.05 16 33 H 0.05 1.23 6.45 -51.93 -0.33 0.90 16 34 H 0.04 0.92 4.51 -22.41 -0.10 0.82 16 35 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 36 H 0.09 1.70 6.91 -51.93 -0.36 1.34 16 37 H 0.06 1.02 6.93 -51.93 -0.36 0.66 16 38 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.36 7.10 -51.93 -0.37 0.99 16 LS Contribution 347.22 15.07 5.23 5.23 Total: -1.00 -26.06 347.22 -8.34 -34.41 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.54 Total: 3.50 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -0.82 Total: -16.42 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.33 Total: -33.61 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.08 Total: -13.91 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Atomic # 16 Polarization: 8.34 SS G_CDS: -1.62 Total: 6.72 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.06 -8.34 -34.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545518779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.370 kcal (2) G-P(sol) polarization free energy of solvation -26.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds